Typing tool
|
Complete norovirus genomes
MG892947 | GII.3 | ||
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GII.P16 |
ORF1: 1..1941 ORF2: 1922..3568 ORF3: 3568..4332LOCUS MG892947 4417 bp RNA linear VRL 09-MAY-2019 DEFINITION Norovirus GII strain Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A863/2017 nonstructural polyprotein (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds. ACCESSION MG892947 VERSION MG892947.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4417) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Molecular epidemiology of human noroviruses associated with sporadic gastroenteritis in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 4417) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT On Dec 14, 2018 this sequence version replaced MG892947.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4417 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A863/2017" /isolation_source="feces" /host="Homo sapiens; sex: M; age: 17 Y" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="26-Jan-2017" /note="genotype: GII.P16/GII.3" gene <1..1941 /gene="ORF1" CDS <1..1941 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AVO62558.2" /translation="QIQIHKSGEFCRFRFPKPIRPDVAGMILEEGAPEGTVATVLIKR PTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKR GNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLST KTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSV LEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTGKL ADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARS FGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLA AALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHW LLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRP DKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETM IPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFS DLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..408 /gene="ORF1" /product="Pro" mat_peptide 409..1938 /gene="ORF1" /product="RNA-dependent RNA polymerase" gene 1922..3568 /gene="ORF2" CDS 1922..3568 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AVO62559.1" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVVSQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ" gene 3568..4332 /gene="ORF3" CDS 3568..4332 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AZM68767.1" /translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQITSLSS HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" 3'UTR 4333..4384 ORIGIN 1 caaattcaga tccacaaatc aggtgaattt tgccgattca gattcccaaa gccaattaga 61 ccagatgtgg caggaatgat cttagaagaa ggtgcgcctg aaggcaccgt ggcaactgtg 121 ctcatcaaac gccccaccgg agagctcatg cctcttgcag ccagaatggg gacacacgca 181 accatgaaaa ttcaaggccg catggttggc ggacagatgg gtatgctgct cactgggtca 241 aatgctaaag gaatggattt gggaacaact cctggtgact gtggctgtcc ttacatctat 301 aaaaggggca atgactatat agtcattggg gtgcacacag cagcagcccg tggtggaaac 361 accgtcatct gtgccacaca gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac 421 aaaggaacat actgtggggc acccattcta ggccctgggg gtgcaccaaa attgagcacc 481 aaaaccaaat tttggaggtc atcgaacacg ccccttccac caggaacata tgagcctgcc 541 tacctcggtg gccgtgatcc gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga 601 gaccagttga agccattcac tgaacccagg ggcaaacccc caagaccaag tgtattggaa 661 gcagccaaac aaaccattat caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg 721 acatacgcac aggcgtgtgc ctcacttgac aaaaccacct ccagcgggca cccccatcac 781 gtccgaaaga atgaattctg gaatggtgag accttcactg gtaaattggc agaccaagca 841 tcaaaagcaa acctaatgtt tgaggagggg aaacacatga caccagtgta tacagcagca 901 ctcaaggacg agctagtcaa gaccgagaaa atctatggaa agatcaagaa gagactgctc 961 tggggctctg acttgtccac catgatccgg tgcgctaggt catttggtgg gctcatggac 1021 gagatgaagg cacactgcat atcactccca gtacgagttg gcatgaatat gaatgaagat 1081 ggcccaataa tatttgagaa acattccaga tataaatatc actatgatgc agactactct 1141 cgttgggatt caacacaaca gagggcagta ctagcagcag ccttggaaat catggtcaga 1201 ttctctgcag aaccacaatt ggcacaaata gtcgctgagg atctgctggc ccctagtgta 1261 gtagatgtag gagactttaa aatcacaata aatgaagggc tcccatctgg tgtgccatgc 1321 acttctcaat ggaactccat tgcacactgg ctgctaactc tctgtgcctt gtctgaggtc 1381 accaaactgt cccctgacat tatacaggca aattccatgt tctcatttta cggtgatgac 1441 gagattgtca gcaccgatat aaaattggac cctgaacagt taaccgccaa gttgaaggag 1501 tacggcctga aaccaacccg cccagacaag accgagggac ccctgatcat cagtgaagat 1561 ttaaacggac tcactttcct ccgaaggacg gtgactcgtg acccagctgg ttggtttgga 1621 aagctggacc aaagctcaat tttgaggcag atgtactgga ctagaggtcc aaatcatgaa 1681 gaccccaatg agacaatgat accccattcc caaagaccca tacagctcat ggcactgctt 1741 ggtgaagcct ctcttcacgg accctctttc tacagtaaaa tcagtaaatt ggtcataact 1801 gaactcaaag aaggtgggat ggacttttac gtgccaaggc aggaacccat gttcaggtgg 1861 atgaggtttt ctgacttgag cacgtgggag ggcgatcgca atctggctcc caattttgtg 1921 aatgaagatg gcgtcgaatg acgccacccc atctaatgat ggtgccgccg gcctcgtccc 1981 agagatcaac aatgaggcaa tggcgctaga tccagtggcg ggtgcagcga tagcagcacc 2041 cctcaccggc cagcaaaata taattgatcc ctggattatg aataattttg tgcaagcacc 2101 tggtggtgag ttcacagtgt ctcctaggaa ttcccctggt gaagtgctcc tcaatttgga 2161 attgggccca gagataaacc cctatctggc ccatcttgct agaatgtata atggttatgc 2221 aggtggattt gaagtgcagg tagtcctggc tggaaatgcg tttacagcag gaaagataat 2281 ctttgcagct atacccccta acttcccaat tgacaatcta agtgcagcac agatcacaat 2341 gtgcccacat gtgattgtgg atgtcaggca gctggaacca gtcaacctcc cgatgcctga 2401 cgttcgcaat aacttcttcc actacaacca agggtctgat tcgaaattgc gcctggttgc 2461 aatgctgtat acacctctta gggcaaataa ctctggggat gatgttttca ctgtgtcttg 2521 tagagtgctg actagaccta gtcctgaatt ttcatttaac ttccttgtgc cacccactgt 2581 ggagtcaaag acaaaacctt ttaccctccc aattctgact atctctgaaa tgtctaattc 2641 taggtttcca gtgccgattg attctctgca caccagccca actgagaata ttgttgtcca 2701 gtgtcaaaat ggacgcgtca ctcttgatgg cgagttgatg ggcaccactc agctcttacc 2761 tagtcaaatc tgtgctttca ggggcgtgct cactagatca acaagcaggg ctagtgacca 2821 ggccgacaca gcaaccccta gattgtttaa ttattattgg cacatacaat tggataatct 2881 aaatgggact ccttatgatc ctgcagaaga cataccaggc cccctaggga caccagattt 2941 tcggggtaaa gtctttggcg tggtcagcca aagaaacccc gacagtacaa ctagagcaca 3001 tgaagcaaag gtggacacaa cagctggtcg cttcacccca aaactaggct cattagagat 3061 atccactgaa tctggtgact ttgaccaaaa ccaaccaaca agattcaccc cagttggcat 3121 tggggttgac catgagtcag acttccagca atggtcctta cccgattact ctggccagtt 3181 cactcacaac atgaacttgg ccccagctgt tgctcccaac ttccctggtg agcagctcct 3241 tttcttccgc tcacagttac catcttctgg tgggcgatcc aatgggattc tagattgcct 3301 ggtcccccaa gaatgggtcc agcacttcta ccaagaatca gcccccgccc aaacccaggt 3361 ggctctggtt agatatgtca accctgacac tggtagagtg ttgtttgagg ccaagctgca 3421 caaattaggt ttcatgacta tagctaagaa tggtgactct ccaataactg tccccccaaa 3481 tggatacttt aggtttgaat cttgggtgaa cccattttac acacttgccc ccatgggaac 3541 tgggaatggg cgtagaagag ttcaataatg gctggtgctt ttatagcagg attagctggt 3601 gatatactca caaatactgt agggtctcta gttaatgcag gggctaatgc tattaatcaa 3661 aaggttgatt ttgaaaataa taaatatttg caaaatgctt ccttcaatca tgataaggaa 3721 atgttaaatg cacagattga ggcaacaaag agattacagg ctgatatgat tgctatcaaa 3781 cagggggttt tgaccgctgg cggcttttcc cccactgatg cagctcgcgg ggcaatcaac 3841 gcccccatga caaaagtcct agattggaat ggaacaaggt actgggcacc aagtgccacc 3901 tctacaacct cgatgtcggg tggcttcaca aaccaggctg tgcacaggac cacgccaaat 3961 tttaaaatga accaggcccc cagatccaca cccagcagtg ggtcttcagt gaggtcactc 4021 tcaacccaaa tcactagtct gagctcacac tcgtccgggt cgtctcgatc cagcggatct 4081 acagttgcta gctcactacc atcctctaac aggactaggg actgggtcaa tcagcaaaat 4141 tttaatttgg aaccacacat gcctgggtca cttaggacgg cttttgtcac tccaccatct 4201 agtacagcct ctagttcagg cactgtctca accgtgccca aaaatgtttt ggactcctgg 4261 acatctgcgt ttaacacgcg cagacagccg ctcttcgcac accttcgtag aaggggggag 4321 tcaaatgttt agtgaaaagg ttatcttaaa tttgatttaa attgagtttg atttggaatc 4381 ttttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa //