Human calicivirus
Typing tool

Complete norovirus genomes

MG892920  GII.3
 GII.P12

Length: 3,264 | 3 CDS 

ORF1: 1..800
ORF2: 781..2427
ORF3: 2427..3191

LOCUS       MG892920                3264 bp    RNA     linear   VRL 03-DEC-2021
DEFINITION  Norovirus GII strain
            Hu/GII.P12-GII.3/RUS/Novosibirsk/NS16-A796/2016 nonstructural
            polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene,
            partial cds; and major capsid protein VP1 (ORF2) and minor capsid
            protein VP2 (ORF3) genes, complete cds.
ACCESSION   MG892920
VERSION     MG892920.2
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Molecular epidemiology of human noroviruses associated with
            sporadic gastroenteritis in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2018) Siberian Branch of the Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine
            (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT     On May 9, 2019 this sequence version replaced MG892920.1.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.P12-GII.3/RUS/Novosibirsk/NS16-A796/2016"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: F; age: 25 Y"
                     /db_xref="taxon:122929"
                     /country="Russia: Novosibirsk"
                     /collection_date="08-Dec-2016"
                     /note="genotype: GII.P12/GII.3"
     gene            <1..800
                     /gene="ORF1"
     CDS             <1..800
                     /gene="ORF1"
                     /codon_start=3
                     /product="nonstructural polyprotein"
                     /protein_id="AVO62502.1"
                     /translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD
                     FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV
                     STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK
                     LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI
                     AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     mat_peptide     <1..797
                     /gene="ORF1"
                     /product="RNA-dependent RNA polymerase"
     gene            781..2427
                     /gene="ORF2"
     CDS             781..2427
                     /gene="ORF2"
                     /codon_start=1
                     /product="major capsid protein VP1"
                     /protein_id="AVO62503.1"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTAIPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
                     TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
     gene            2427..3191
                     /gene="ORF3"
     CDS             2427..3191
                     /gene="ORF3"
                     /codon_start=1
                     /product="minor capsid protein VP2"
                     /protein_id="AVO62504.2"
                     /translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQITSLSS
                     HSSGSSRSSGSTAASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
     3'UTR           3192..3243
ORIGIN      
        1 ggtgggattc aacacaacaa agagccgtgt tggcagcagc cttagaaatc atggtcaagt
       61 tttccccaga gccacacctg gcccaaaagg ttgcagaaga ccttctttct cccagcgtga
      121 tggacgtggg tgatttcaaa atatcaatca atgagggtct cccctccgga gtgccctgca
      181 cctcccaatg gaattccatc gcccactggc tcctcactct ctgtgcactc tctgaggtta
      241 caaacctgtc ccctgacatt attcaggcta attctctctt ttctttctac ggtgatgatg
      301 aaattgtgag tacagacata aaattggacc cagaaaaact gacagcaaaa ctcaaggaat
      361 acgggttgaa accgacccgc cctgacaaaa ctgaagggcc tcttgtcatt tccgaagacc
      421 tgaatggcct aaccttcctg cggaggaccg tgactcgcga cccagcaggc tggtttggaa
      481 agttggaaca gagctcaata ctcagacaaa tgtactggac taggggcccc aaccatgaag
      541 atccatctga aacaatgata ccacactccc agaggcccat acaattgatg tctttgctgg
      601 gtgaggcagc actccacggc ccagcattct acagcaaaat cagtaaactg gtcattgcag
      661 agttgaagga gggtggcatg gacttttacg tgccaaggca agagccgatg ttcagatgga
      721 tgagattctc ggatctgagc acgtgggagg gcgatcgcaa tctggctccc agttttgtga
      781 atgaagatgg cgtcgaatga cgccacccca tctaatgatg gtgccgccgg cctcgtccca
      841 gagatcaaca atgaggcaat ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc
      901 ctcaccggcc agcaaaatat aattgatccc tggattatga ataattttgt gcaagcacct
      961 ggtggtgagt tcacagtgtc tcctaggaat tcccctggtg aagtgctcct caatttggaa
     1021 ttgggcccag agataaaccc ctatctggcc catcttgcta gaatgtataa tggttatgca
     1081 ggtgggtttg aagtgcaggt agtcctggct ggaaatgcgt ttacagcagg aaagataatc
     1141 tttgcagcta taccccctaa cttcccaatt gacaatctaa gtgcagcaca gatcacaatg
     1201 tgcccacatg tgattgtgga tgtcaggcag ctggaaccag tcaacctccc gatgcctgac
     1261 gttcgcaata acttcttcca ctacaaccag gggtctgatt cgagattgcg cttggttgca
     1321 atgctgtata cacctcttag ggcaaataac tctggggatg atgttttcac tgtgtcttgt
     1381 agagtgctga ctagacctag tcctgaattt tcatttaact tccttgtgcc acccactgtg
     1441 gagtcaaaga caaaaccttt taccctccca attctgacta tctctgaaat gtctaattct
     1501 aggtttccag tgccgattga ttctctgcac accagcccaa ctgagaatat tgttgtccag
     1561 tgtcaaaatg gacgcgtcac tcttgatggc gagttgatgg gcaccactca gctcttacct
     1621 agtcaaatct gtgctttcag gggcgtgctc actaggtcaa caagcagggc tagtgaccag
     1681 gccgacacag caatccctag attgtttaat tattattggc acatacaatt ggataatcta
     1741 aatgggactc cttatgatcc tgcagaagac ataccaggcc ccctggggac accagatttt
     1801 cggggtaaag tctttggcgt ggccagccaa agaaaccccg acagtacaac tagagcacat
     1861 gaagcaaagg tggacacaac agctggtcgc ttcaccccaa aactaggctc attagagata
     1921 tccaccgaat ctgatgactt tgaccaaaac caaccaacaa gattcacccc agttggcatt
     1981 ggggttgacc atgagtcaga cttccagcaa tggtccttac ccgattactc tggccagttc
     2041 actcacaaca tgaacttggc cccagctgtt gctcccaact tccctggtga gcagctcctt
     2101 ttcttccgct cacagttacc atcttctggt gggcgatcca atgggattct agattgcctg
     2161 gtcccccaag aatgggtcca gcacttctac caagaatcag cccccgccca aacccaggtg
     2221 gctctggtta gatatgtcaa ccctgacact ggtagagtgt tgtttgaggc caagctgcac
     2281 aaattaggtt tcatgactat agctaagaat ggtgactctc caataactgt ccccccaaat
     2341 ggatacttta ggtttgaatc ttgggtgaac ccattttaca cacttgcccc catgggaact
     2401 gggaatgggc gtagaagagt tcaataatgg ctggtgcttt tatagcagga ttagctggtg
     2461 atatactcac aaatactgta gggtctctag ttaatgcagg ggctaatgct attaatcaaa
     2521 aagttgattt tgaaaataat aaatatttgc aaaatgcttc cttcaatcat gataaggaaa
     2581 tgttaaatgc acagattgag gcaacaaaga gattacaggc tgatatgatt gctatcaaac
     2641 agggggtttt gaccgctggc ggcttttccc ccactgatgc agctcgcggg gcaatcaacg
     2701 cccccatgac aaaagtccta gattggaatg gaacaaggta ctgggcacca agtgccacct
     2761 ctacaacctc gatgtcgggt ggcttcacaa accaggctgt gcacaggacc acgccaaatt
     2821 ttaaaatgaa ccaggccccc agatccacac ccagcagtgg gtcttcagtg aggtcactct
     2881 caacccaaat cactagtctg agctcacact cgtccgggtc gtctcgatcc agcggatcta
     2941 cagctgctag ctcactacca tcctctaaca ggactaggga ctgggtcaat cagcaaaatt
     3001 ttaatttgga accacacatg cctgggtcac ttaggacggc ttttgtcact ccaccatcta
     3061 gtacagcctc tagttcaggc actgtctcaa ccgtgcccaa aaatgttttg gactcctgga
     3121 catctgcgtt taacacgcgc agacagccgc tcttcgcaca ccttcgtaga aggggggagt
     3181 caaatgttta gtgaaaaggt tatcttaaat ttgatttaaa ttgaatttga tttggaatct
     3241 tttaaaaaaa aaaaaaaaaa aaaa
//