Human calicivirus
Typing tool

Complete norovirus genomes

MG892076  GII.3
 GII.P21

Length: 2,763 | 3 CDS 

ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..2763

LOCUS       MG892076                2763 bp    RNA     linear   VRL 10-JAN-2019
DEFINITION  Norovirus GII strain
            Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N3700/2012 nonstructural
            polyprotein, RdRp region, (ORF1) gene, partial cds; VP1 (ORF2)
            gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION   MG892076
VERSION     MG892076.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
            Sedelnikova,D. and Tikunova,N.
  TITLE     Changing pattern of prevalence and genetic diversity of rotavirus,
            norovirus, astrovirus, and bocavirus associated with childhood
            diarrhea in Asian Russia, 2009-2012
  JOURNAL   Infect. Genet. Evol. 67, 167-182 (2019)
   PUBMED   30414977
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2018) Siberian Branch of the Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine
            (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N3700/2012"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: F; age: 5 months"
                     /db_xref="taxon:122929"
                     /country="Russia: Novosibirsk"
                     /collection_date="06-Feb-2012"
                     /note="genotype: GII.P21/GII.3"
     gene            <1..825
                     /gene="ORF1"
     CDS             <1..825
                     /gene="ORF1"
                     /codon_start=1
                     /product="nonstructural polyprotein"
                     /protein_id="AVO62432.1"
                     /translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL
                     SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
                     SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
                     RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
                     YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDPNLAPSFVNEDGVE"
     mat_peptide     <1..822
                     /gene="ORF1"
                     /product="RdRp"
     gene            806..2452
                     /gene="ORF2"
     CDS             806..2452
                     /gene="ORF2"
                     /note="major capsid protein"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AVO62433.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNSDATTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNQP
                     TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
     gene            2452..>2763
                     /gene="ORF3"
     CDS             2452..>2763
                     /gene="ORF3"
                     /note="minor structural protein; minor capsid protein;
                     small basic protein"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AVO62434.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TR"
ORIGIN      
        1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtactggct
       61 gcagccctgg aaataatggt caaattttca ccagaacccc atctggccca agtagttgca
      121 gaagacctct tgtcccccag tgtgatggac gtgggtgatt tcaagatatc aatcaacgag
      181 ggattaccct ctggtgttcc ttgcacctca caatggaact ccattgccca ctggctcctc
      241 acactatgtg cactgtctga agtcacagac ctgtctcctg atatcatcca ggcgaattcc
      301 ctgttctcct tttatggtga cgatgaaata gtgagcacag acatcaaatt ggacccggag
      361 aaattgacaa caaaattgaa ggaatacggg ctcaaaccaa cccgtcctga taaaacagaa
      421 ggacccttaa tcatctctga agatttggat ggcctgacct tcttgcggag aacagtgacc
      481 cgtgatccgg ccggatggtt tggcaaactg gatcaaagtt caatactcag gcagatgtac
      541 tggaccaagg gaccaaacca tgaggacccc tttgaaacaa tgataccaca ctcccaaagg
      601 cccatacaac tgatgtcatt actgggtgaa gctgcattgc atggtccatc attctacagt
      661 aaaatcagca aattggtcat ctcagaattg aaagagggtg gaatggattt ttacgtgccc
      721 agacaggaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
      781 cccaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
      841 tgatggtgcc gccggcctcg tcccagagat caataatgag gcaatggcgc tagagccagt
      901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat
      961 tatgaataac tttgtgcaag cacctggtgg tgagttcaca gtgtccccca gaaattcccc
     1021 tggtgaagtt cttcttaatt tggaactggg cccagaaata aatccctatt tggcccatct
     1081 tgctagaatg tataatggtt atgcaggtgg atttgaggtg caggtggtcc tagctggaaa
     1141 tgcgtttaca gcaggaaaga taatctttgc agctattccc cccaattttc caattgacaa
     1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
     1261 accagtcaac ctcccgatgc ctgacgttcg caacaacttc ttccattaca atcaagggtc
     1321 tgattcgaga ttgcgcctaa ttgcaatgtt gtacacacct cttagggcta ataattctgg
     1381 ggatgatgtt ttcactgtgt cttgcagagt gctaactaga cctagtcctg acttctcatt
     1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctattct
     1501 gactatctct gaaatgtcca actctaggtt tccagtacca attgattctc tgcacaccag
     1561 tcctactgag aatattgttg ttcagtgcca gaatgggcgc gtcacccttg atggtgagtt
     1621 gatgggcacc acccaactct tacctagtca aatctgtgct ttcaggggcg ttttgaccag
     1681 atcaacaagc agggccagtg atcaggccga tacagcaact cctagattgt ttaattatta
     1741 ttggcatata caattggata atctaaatgg aacaccttat gatcctgcag aagacatacc
     1801 aggcccccta gggacaccag atttccgggg caaagtcttt ggcgtggcca gccagagaaa
     1861 ttctgatgcc acgaccaggg cacatgaagc aaagatagac acaacatctg gccgcttcac
     1921 cccaaagcta ggctcattag agatatccac tgaatctgat gattttgatc aaaaccaacc
     1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggac
     2041 tctacccgac tacgctggcc agttcacaca caacatgaac ttagccccag ctgttgctcc
     2101 taacttccct ggtgagcagc tccttttctt ccgctcacag ttgccatctt ctggtgggcg
     2161 atccaacggg attctagact gccttgtccc ccaagaatgg gtacagcact tctaccagga
     2221 atcagccccc tctcagtctc aagtggccct ggttaggtat atcaaccctg acactggtag
     2281 agtgttattt gaggccaagc tgcataaatt aggtttcatg actatagcca agaatggtga
     2341 ttctccaata actgtccctc caaatggata ttttaggttt gaatcttggg tgaacccctt
     2401 ttacacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
     2461 gctttcatag caggattggc tggtgatatg cttacaaata ctgtaggatc tttagttaat
     2521 gcaggggcta atgctattaa tcaaacaatt gattttgaaa ataataaata tttgcaaaat
     2581 gcttctttca atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta
     2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccccact
     2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaaca
     2761 aga
//