Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MG733287 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 1..5037
ORF2: 5018..6640
ORF3: 6640..7413
LOCUS MG733287 7413 bp RNA linear VRL 31-DEC-2018
DEFINITION Norovirus GII strain Hu/GII.4/WZ785/2013/CHN nonstructural
polyprotein gene, partial cds; VP1 gene, complete cds; and VP2
gene, partial cds.
ACCESSION MG733287
VERSION MG733287.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7413)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Identification of non-enterovirus viruses in patients with hand,
foot and mouth disease symptoms in Wenzhou, Zhejiang province
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7413)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2017) Zoonosis, National Institute for
Communicable Disease Control and Prevention, Chinese Center for
Disease Control and Prevention, Liuzi 5, Changping, Beijing,
Beijing 102206, China
COMMENT ##Assembly-Data-START##
Assembly Method :: DNAStar v. 8.0
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7413
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.4/WZ785/2013/CHN"
/isolate="WZ785"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="18-Jul-2013"
/note="genotype: GII.4"
CDS <1..5037
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AVI57668.1"
/translation="TTSQIFSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPPRPPTP
ELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRD
AKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFWRPVYT
PQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQ
DWNRKPLPTMDDSKLKTEANIFLCTLSSLFTRPIGHIGRNLNILNILATCDWTFAGIV
ESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGLVLGFTK
EKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDL
EAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAA
RSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRNG
VDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAI
IITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSPDFS
HIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPALTTF
NFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKCQIVYNG
GTYTLEADGKGGVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQI
AGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDDIKTEGK
KGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVAIA
RATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKLWA
DDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGVP
IKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARM
GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTA
AARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPL
PPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVL
EQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFE
EGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHC
VTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPE
PHLAQTVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD
LSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED
LDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMS
LLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
CDS 5018..6640
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AVI57669.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDITHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6640..>7413
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AVI57670.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWNGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSAARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFA"
ORIGIN
1 acgacatcgc aaatcttcag tgacggtgtg ttttctaaca tggctgtcac ttttaagcgg
61 gccctcgggg cgcggcctaa acagccgccc ccgaaggaaa taccacccag acccccgcga
121 ccacccacac cagaattggt caaaaagatc cctcctcccc cacccaacgg ggaggatgaa
181 ctagtggtct cttacagcgc caaagatggc gtttccggac tgcctgagct caccactgtc
241 agacaaccgg aagaaaccaa cacggcgttc agtgtccccc cactcaacca aagggagagc
301 agggacgcca aggagccact aactggaaca atcattgaaa tgtgggatgg agaaatctac
361 cattacggcc tgtacgtgga acgaggtctt atacttggtg tgcacaagcc accggcagcc
421 attagccttg ccaaggtcga gctagcaccg ctctctttgt tctggagacc tgtatacacc
481 ccccagtatc tcatctctcc agacactctt aggagattac atggagagtc attcccctac
541 actgcatttg acaacaattg ctacgccttt tgttgttggg tattagacct aaacgactca
601 tggctaagca ggagaatgat tcagagaaca acaggcttct tcaggccgta ccaggattgg
661 aacaggaaac ccctccccac tatggatgat tccaaattaa agacggaagc caacatattc
721 ttgtgcactt tgtcttccct attcaccaga cccataggac atataggaag gaatcttaac
781 atccttaaca ttctggctac atgtgattgg accttcgcag gcatagtgga atccttaata
841 ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc
901 cccttgctag gtgattatga attgcaagga cctgaggacc ttgcagtgga actggtccca
961 atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat cggaaagatg
1021 ctatcatccg ctgcatccac tttaagagct tgtaaagacc ttggtgcata cggactggaa
1081 atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct
1141 atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg
1201 accaccctac tcaaagacaa agacagcttg gcaacctaca tgagaaccct tgaccttgag
1261 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc
1321 aactctcttc tggcaagaat cgctgctgca cgctccctag tgcatcgggc gaaagaagag
1381 ctctccagca ggccgagacc tgtcgttgtg atgatatcgg gaagaccagg gatagggaaa
1441 actcaccttg ccagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt
1501 gtgggtctta tcccacgcaa tggtgtcgac cactgggacg catacaaggg cgaaagagtt
1561 gtcctatggg acgactatgg aatgagcaac cccatccatg atgccctcag gttgcaggag
1621 cttgctgaca cttgccccct cacgctaaat tgtgatagaa ttgagaacaa agggaaagtc
1681 tttgacagtg atgccataat tatcaccacc aatctggcca acccagcacc actggattat
1741 gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag
1801 gtggagaagg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagt
1861 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggc
1921 aacaccccgc atggaaaagg ggtcatgaag accctcacca ctggctccct catcgcccga
1981 gcatcagggt tactccatga gaggctagat gaatatgaac tgcaaggccc agccctcacc
2041 actttcaact ttgaccgcaa caagatactt gcttttaggc agcttgctgc tgaaaacaag
2101 tatgggctga tggacacaat gagagttgga aaacagctca aggatgtcaa gaccatgtca
2161 gacctcaaac aagcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt
2221 ggcacctaca cacttgaggc tgatggcaag ggtggtgtga aagttgacaa agtgcaaagt
2281 gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag gtgcgctaga
2341 atcagatact atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg
2401 gctgcgttcg tcactacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag
2461 ccacaggtgg aagacacaga agagatggcc aacaaagatg gttgcctaaa acccaaagat
2521 gatgaagagt ttgtcgtctc atccgacgac atcaaaactg agggcaagaa agggaagaac
2581 aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgatgaggag
2641 tacgatgagt acaagagaat cagagaagaa aggaatggta agtactccat agaagagtac
2701 cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac cgaagaggac
2761 ttctgtgaag aagaagaggc caaaatccgg cagagaattt tcagaccaac aaggaaacaa
2821 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaatcag gaagagaaac
2881 ccagaagact tcaaacccaa gggaaagctg tgggctgatg atgacaggag cgttgactac
2941 aatgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt
3001 tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc
3061 caaggtgcaa aagagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt
3121 gaattctgcc ggttgagatt tccaaagcca atcaggactg atgtgacggg catgattcta
3181 gaagaaggtg cgcccgaggg gaccgtggcc acactgctca tcaagagacc aactggagag
3241 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca
3301 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagtat ggacctaggc
3361 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtc
3421 ataggagtcc atacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg
3481 agtgagggag aagccacact tgaaggaggt gacagtaaag ggacatactg tggcgcacca
3541 atcttgggcc cagggagcgc tccgaagctc agtaccaaga ctaagttttg gagatcatcc
3601 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggcaa agaccctaga
3661 gtcaaaggtg gcccttcatt gcaacaagtt atgagggacc agctgaagcc attcacagaa
3721 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat
3781 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc
3841 cttgacaaaa ccacctccag cggccacccg caccacatgc ggaagaacga ctgttggaat
3901 ggggagtcct tcacaggaaa attggctgat caagcctcca aggccaacct aatgtttgaa
3961 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgagtt ggtgaagacc
4021 gataaagttt atggtaaggt caagaagagg cttctgtggg gttcagatct ggcgaccatg
4081 atacggtgcg cccgagcttt tggaggcctt atggatgaac tcaaggcaca ctgtgtcaca
4141 cttcctgtca gagttggtat gaacatgaat gaggatggtc ccatcatctt tgagaagcac
4201 tccagatata gatatcacta tgatgctgat tattcccggt gggactcaac acaacaaagg
4261 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc
4321 cagacagttg cagaagacct cctttcccct agcgtgatgg atgtaggtga ctttcaaata
4381 tcaataagtg agggtctccc ctctggggta ccttgtacct cccagtggaa ttccatcgcc
4441 cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt
4501 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac agacataaaa
4561 ttggacccag agaagctgac agcaaagctc aaggagtacg ggctgaaacc aacccgcccc
4621 gacaaaactg aaggacccct tgttatctct gaagacctgg atggcctgac attcctccgg
4681 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctc
4741 aggcaaatgt actggaccag gggtcccaac catgaagatc catttgaaac aatgatacca
4801 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcgct ccacggcccg
4861 gcattctata gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat
4921 ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga cctgagcacg
4981 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
5041 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc
5101 tctggagccc gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat
5161 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtatcccc
5221 tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatc taaaccccta
5281 cttatcccat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat
5341 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaactt
5401 tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt
5461 taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta
5521 caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtatacac cacttagggc
5581 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga gaccatcccc
5641 cgattttgat ttcatatttc tagtgccacc cacagttgag tcaagaacta aaccattctc
5701 tgtcccagtt ttaactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa
5761 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta ggtgcacgac
5821 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aacatctgca ccttcagagg
5881 agatatcacc catatcacag gtagtcgtaa ctacacaatg aatttggcct ctcaaaattg
5941 gagcaattat gacccaacag aagaaatccc agcccctcta ggaactccag attttgtggg
6001 gaagattcaa ggcgtgctca cccaaaccac aaggacagat ggctcaacac gcggccacaa
6061 agccacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag ttcaatttga
6121 aactgacaca gaccatgatt ttgaagctaa ccaaaacaca aaattcaccc cagttggtgt
6181 catccaagat ggtggcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagtta
6241 ctcaggcaga aatactccta atgtgcatct ggcccccgct gtagccccca cttttccggg
6301 tgagcaactt ctcttcttca gatccaccat gcccggatgc agcgggtacc ccaacatgga
6361 tttggactgt ctgctccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
6421 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga
6481 gtgtaagctt cataaatcag gctatgttac agtggctcac actggccaac atgatttggt
6541 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc
6601 ccccatggga aatggaacgg ggcgtagacg tgcactataa tggctggagc tttctttgct
6661 ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg
6721 gccatcaacc aaaaagttga gtttgaaaat aatagaaaat tgcaacaagc atccttccaa
6781 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
6841 attgaggcaa ccaaaaggct acaacaggaa atgatgaaag ttaagcaggc aatgctccta
6901 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc catgacaaaa
6961 gctttggact ggaacgggac aaggtactgg gctcccgatg ctaggactac aacatacaat
7021 gcaggccgct tttccacccc tcaaccatcg ggggcactgc caggaagagc taatcttagg
7081 gatgctgtcc ctgctcgggg ttcctccagt aagtcttcta attcttctac tgctacttct
7141 gtgtactcaa atcaaactac ttcaacgaga cttggttcta cagctggttc tggtaccagt
7201 gtctcgagct tcccgtcagc tgcaaggact aggagctggg tcgaggatca aagtaggaat
7261 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga
7321 tcctctagcc aaggcacagt ctcaaccgtg cctaaggaga ttttggactc ctggactggc
7381 gctttcaaca cgcgcaggca gccactcttc gct
//