Typing tool
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Typing tool
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Complete norovirus genomes
| MG733286 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5024
ORF2: 5005..6627
ORF3: 6627..7433
LOCUS MG733286 7433 bp RNA linear VRL 31-DEC-2018
DEFINITION Norovirus GII strain Hu/GII.4/WZ700/2013/CHN nonstructural
polyprotein gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION MG733286
VERSION MG733286.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7433)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Identification of non-enterovirus viruses in patients with hand,
foot and mouth disease symptoms in Wenzhou, Zhejiang province
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7433)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2017) Zoonosis, National Institute for
Communicable Disease Control and Prevention, Chinese Center for
Disease Control and Prevention, Liuzi 5, Changping, Beijing,
Beijing 102206, China
COMMENT ##Assembly-Data-START##
Assembly Method :: DNAStar v. 8.0
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7433
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.4/WZ700/2013/CHN"
/isolate="WZ700"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="12-Aug-2013"
/note="genotype: GII.4"
CDS <1..5024
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AVI57665.1"
/translation="DGVLSSMAVTFKRALGARHKQPPPREIPPRPPRPPTPELVKKIP
PPPPNGEDELVVSYSAKDGVSGLPELTTVRQPDETNTAFSVPPLNQRENRDAKEPLTG
TILEMWEGKIYLYGLYVERGLVLGGHKPPAAITLARVELAPLSLFWRPVYPPQNLISP
NPLRKLHGKPFPYPAFDNNCYAFCCGYQNLTNSGLCRKMIQRTPGSFRPYQNWTRKPL
PLWNNSNLKKEANIFWGALSSLFTRPIKDIIGKGRPAHILNILASCDWTFAGIVESLI
LLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIG
KMLSSAATTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDLEAIE
NNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAARSLV
HRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRNGVDHW
DAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITT
NLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNASSSDFSHIKL
SLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPTLTTFNFDR
NKVLAFRQLAAENKYGLMDTMRVGAAQDVKTMSELKQALKNVAIKNCQIVYGGCTYRL
ESDGKGDVKVDRVQNATVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAF
VTTRIVKRMNIQDLWSKPQVEDTEETASKDGCPKPKDDEEFVVSSDDIRTEGKKGKNK
SGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIARATEE
DFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWADDDRS
VDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPIKQIQ
IHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPTGELMPLAARMGTHAT
MKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGG
NTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTY
EPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIVNVLEQTID
PPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNM
TPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPV
RVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQ
TVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDI
IQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLT
FLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEA
ALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVN
EDGVE"
CDS 5005..6627
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AVI57666.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDITHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6627..7433
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AVI57667.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWNGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgacggagt gctttctagc atggctgtca cttttaaacg agccctcggg gcgcggcata
61 aacagcctcc cccgagggaa ataccaccca ggcctccacg gccacccacc ccagaattgg
121 tcaaaaagat ccctcctccc ccacccaacg gggaggatga actagtggtt tcttacagcg
181 ccaaagatgg cgtttctgga ttgcctgagc tcaccactgt cagacaaccg gatgaaacca
241 acacggcgtt cagtgttccc ccactcaacc aaagggagaa cagggacgct aaggagccac
301 tgaccggaac aatcctggaa atgtgggagg ggaagatcta tctttatggt ttgtatgtgg
361 agcgaggcct tgtacttggg gggcacaaac ccccagctgc catcaccctc gccagggttg
421 aactcgcacc actttctcta ttttggaggc cggtgtaccc cccacagaat ctcatctctc
481 caaaccctct taggaagttg catggaaagc ctttccctta cccggccttt gacaacaact
541 gctatgcctt ctgttgtggg tatcagaacc taaccaactc ggggttgtgc aggaaaatga
601 tccaaaggac acctggttcc ttcaggcctt accaaaactg gaccagaaaa cccctccccc
661 tctggaataa ctccaattta aaaaaggaag ccaacatatt ctggggtgcg ctatcttcgc
721 tattcactag gcctatcaaa gatataatag gaaaggggag acctgctcac atccttaaca
781 tcttggcctc atgtgattgg acttttgcag gcatagtgga atctttgatt ctcctggcag
841 agctctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttactag
901 gtgactacga actgcagggg cctgaggacc ttgcagtgga actcgtacca gtagtaatgg
961 gggggattgg tttggtgcta ggattcacca aagagaagat cggaaaaatg ttgtcatctg
1021 ctgcaaccac cttaagagct tgtaaagatc ttggtgcata tggattggaa atcctaaaat
1081 tggtcatgaa gtggttcttc ccaaagaaag aggaggcaaa tgagctggcc atggtgaggt
1141 ccattgagga tgcggtgctg gacctcgaag caattgagaa caaccacatg actgccctcc
1201 tcaaagacaa ggacagcttg gcaacctaca tgagaaccct tgacctcgag gaggagaaag
1261 ccaggaaact ttcaaccaag tctgcttcac ctgacatcgt gggcacaatt aactctcttc
1321 tggcgagaat cgccgctgca cgttccctgg tgcatcgggc gaaagaggaa ctctccagca
1381 gaccaagacc tgttgttgtt atgatatcag gcaggccagg gataggaaaa actcaccttg
1441 ccagggagct agccaagaaa atcgcagctt cccttacagg ggaccagcgt gtgggtctca
1501 tccctcgcaa tggcgttgat cactgggatg catataaggg tgaaagagtc gtcctatggg
1561 atgattatgg aatgagtaat cccatccatg acgccctcag gttacaggaa cttgctgaca
1621 cctgccccct cacgttgaac tgtgacagga ttgagaacaa aggaaaggtc tttgacagtg
1681 atgccataat catcaccacc aatctggcca acccagcacc attggattat gtcaactttg
1741 aagcatgttc gaggcgcatt gatttcctcg tgtatgcaga agcccctgag gtggagaagg
1801 caaagcgtga tttcccaggt caacctgaca tgtggaagaa cgcttctagt tctgacttct
1861 cgcacataaa actgtcattg gctccacagg gtggttttga caagaacggc aacaccccac
1921 acgggaaagg ggtcatgaag accctcacca ctggttccct catcgcccga gcatcagggt
1981 tactccatga gaggttagat gaatatgagc tgcagggccc aactctcacc acctttaact
2041 ttgaccgcaa caaggtgctt gcgttcagac agcttgctgc tgaaaacaag tatggattga
2101 tggacacaat gagagttgga gcagctcagg atgtcaagac catgtcggag ctcaaacagg
2161 cactcaagaa tgtcgcaatc aagaattgcc agatagtgta tggtggctgc acttataggc
2221 ttgagtctga tggcaagggt gatgtaaaag ttgacagagt tcagaacgcc actgtacaga
2281 ccaacaatga acttgccggc gccctacacc accttaggtg tgccagaatc agatattatg
2341 tcaagtgtgt ccaagaggcc ctgtattcca tcatccaaat tgctggagct gcatttgtca
2401 ccacgcgcat tgtcaagcgc atgaacatac aagacctctg gtccaagccg caggtagagg
2461 atacagagga aaccgccagc aaggatgggt gcccaaaacc caaggatgat gaagagttcg
2521 ttgtctcatc cgatgacatc agaaccgagg gcaagaaagg gaagaacaag tctggccgtg
2581 gcaagaagca cacagccttc tcaagtaaag gtctcagtga tgaagagtac gatgagtaca
2641 agagaatcag ggaagaaaga aatggtaaat actccataga ggagtacctt caggacagag
2701 acaagtatta tgaggaggtg gccatcgcca gggcgaccga agaggacttc tgtgaagagg
2761 aagaggccaa gatccgacag aggatcttca gaccaacaag gaaacaacgc aaagaggaga
2821 gggcctctct cggtttggtc acaggctctg aaatcaggaa gagaaaccca gacgacttca
2881 aacctaaagg aaagctgtgg gctgatgacg acaggagtgt tgactacaat gagagactca
2941 attttgaagc cccgccgagc atctggtcga ggatagtcaa ctttggttca ggttggggct
3001 tttgggtttc ccccagcctg ttcataacat caacccatgt cataccccag ggcgcacagg
3061 agttcttcgg tgtccccatc aaacagattc agatacacaa atcgggtgaa ttctgccgtt
3121 tgaggtttcc aaaaccgatc agaactgacg tgacaggcat gattttagaa gaaggtgcac
3181 ccgaagggac cgtggtcaca ttactcatca aaaggccaac tggggaactc atgcccctgg
3241 cagccagaat gggaacccat gcaaccatga agattcaagg gcgcacagtt gggggtcaaa
3301 tgggcatgct cctaacagga tccaacgcca agagtatgga cctaggcaca acaccaggtg
3361 actgtggctg tccctacatt tacaagaggg ggaatgacta cgtggtcatt ggagtccaca
3421 cggctgccgc ccgtggaggg aacactgtca tatgtgccac ccaggggagt gagggagaag
3481 ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc ttaggtccag
3541 gaagtgctcc aaaactcagc accaagacta aattctggag gtcgtccacg gcaccactcc
3601 cacctggcac ctatgagcca gcctacctcg gcggcaagga ccccagagtt aagggtggtc
3661 cctcattaca acaagttatg agggaccaac tgaaaccatt cactgagccc aggggcaaac
3721 caccaaagcc aagtgtgttg gaagctgcca agaaaaccat cgtcaacgtc cttgaacaaa
3781 caattgatcc acctcaaaaa tggtcgtttg cacaagcatg cgcatccctt gacaagacca
3841 cttccagcgg tcacccgcac cacatgcgga aaaatgactg ttggaacggg gagtccttta
3901 caggaaaatt agcagaccag gcttccaaag ctaacctgat gtttgaggag ggaaagaaca
3961 tgaccccagt ctacacgggt gcacttaagg acgagctggt caagactgac aagatttatg
4021 gcaagatcaa aaagaggctt ctctggggtt cagatctggc gaccatgata cggtgcgccc
4081 gagcttttgg aggccttatg gatgaactca aggcacactg tgtcacactt cctgtcagag
4141 ttggtatgaa catgaatgag gatggtccca tcatctttga gaagcactcc agatatagat
4201 atcactatga tgctgattat tcccggtggg actcaacaca acaaagggat gtgctagcag
4261 cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag acagttgcag
4321 aagacctcct ttcccctagc gtgatggatg taggtgactt tcagatatca ataagtgagg
4381 gtctcccctc tggggtacct tgtacctccc agtggaattc catcgcccac tggctcctca
4441 ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag gccaactccc
4501 ttttctcctt ctatggtgat gatgagattg taagcacaga cataaaattg gacccagaga
4561 agctgacagc aaagctcaag gagtacgggc tgaaaccaac ccgccccgac aaaactgaag
4621 gaccccttgt tatctctgaa gacctggatg gcctgacatt cctccggaga actgtgaccc
4681 gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattctcagg caaatgtact
4741 ggaccagggg tcccaaccat gaagatccat ttgaaacaat gataccacac tcccaaagac
4801 ccatacaatt gatgtccttg ctgggcgagg ctgcgctcca cggcccggca ttctatagca
4861 aaattagcaa attagtcatt gcagagttga aggaaggtgg catggatttt tacgtgccca
4921 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
4981 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5041 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct ggagcccgtt
5101 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5161 agaaataatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5221 ggtgaaatac tatggagcgc gcccttgggc cctgatctaa acccctactt atcccatttg
5281 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct cgcggggaac
5341 gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaactttcc aactgaaggc
5401 ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag gcaactagaa
5461 cctgtgttga ttcccttacc cgatgttagg aataatttct atcattacaa tcaatcaaat
5521 gaccccacca ttaagttgat agcaatgttg tatacaccac ttagggctaa taatgctggg
5581 gatgatgtct tcacagtttc ttgccgagtt ctcacgagac catcccccga ttttgatttc
5641 atatttctag tgccacccac agttgagtca agaactaaac cattctctgt cccagtttta
5701 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt
5761 cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga tggcgtgctc
5821 ctaggcacca cccaactgtc tcctgtcaac atctgcacct tcagaggaga tatcacccat
5881 atcacaggta gtcgtaacta cacaatgaat ttggcttctc aaaattggag caattatgac
5941 ccaacagaag aaatcccagc ccctctagga actccagatt ttgtggggaa gattcaaggc
6001 gtgctcaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc cacagtgtac
6061 actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac tgacacagac
6121 catgattttg aagctaacca aaacacaaaa ttcaccccag ttggtgtcat ccaagatggt
6181 ggcaccaccc accgaaatga accccaacag tgggtgctcc caagttactc aggcagaaat
6241 actcctaatg tgcatctggc ccccgctgta gcccccactt ttccgggtga gcaacttctc
6301 ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt ggactgtctg
6361 ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcaca atctgatgtg
6421 gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg taagcttcat
6481 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat
6541 ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc catgggaaat
6601 ggaacggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga ttggcatctg
6661 atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc atcaaccaaa
6721 aagttgagtt tgaaaataat agaaaattgc aacaagcatc cttccaattt agcagcaatt
6781 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggcaacca
6841 aaaggctaca acaggaaatg atgaaagtta agcaggcaat gctcctagag ggtgggttct
6901 ctgagacaga tgcagcccgc ggggcaatca acgcccccat gacaaaagct ttggactgga
6961 acgggacaag gtactgggct cccgatgcta ggactacaac atacaatgca ggccgctttt
7021 ccacccctca accctcgggg gcactgccag gaagagctaa tcttagggat gctgtccctg
7081 ctcggggttc ctccagtaag tcttctaatt cttctactgc tacttctgtg tactcaaatc
7141 aaactacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcttcc
7201 cgtcaactgc aaggactagg agctgggtcg aggatcaaag taggaatttg tcacctttca
7261 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7321 gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct ttcaacacgc
7381 gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggtg taa
//