Typing tool
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Typing tool
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Complete norovirus genomes
| MG733285 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5062
ORF2: 5043..6665
ORF3: 6665..7450
LOCUS MG733285 7450 bp RNA linear VRL 31-DEC-2018
DEFINITION Norovirus GII strain Hu/GII.4/WZ320/2013/CHN nonstructural
polyprotein gene, partial cds; VP1 gene, complete cds; and VP2
gene, partial cds.
ACCESSION MG733285
VERSION MG733285.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7450)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Identification of non-enterovirus viruses in patients with hand,
foot and mouth disease symptoms in Wenzhou, Zhejiang province
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7450)
AUTHORS Li,K. and Zhang,Y.-Z.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2017) Zoonosis, National Institute for
Communicable Disease Control and Prevention, Chinese Center for
Disease Control and Prevention, Liuzi 5, Changping, Beijing,
Beijing 102206, China
COMMENT ##Assembly-Data-START##
Assembly Method :: DNAStar v. 8.0
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7450
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.4/WZ320/2013/CHN"
/isolate="WZ320"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="06-Jun-2013"
/note="genotype: GII.4"
CDS <1..5062
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AVI57662.1"
/translation="KLARTTTSQIFSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPP
RPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAFSVPPLNQ
RESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFW
RPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF
FRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATC
DWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGI
GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRS
IEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINS
LLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQR
VGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG
KVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK
NAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYEL
QGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIK
KCQIVYNGGTYTLEADGKGGVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQE
ALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSS
DDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDR
YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDF
KPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG
AKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGE
LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY
VVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKF
WRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAA
KKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA
SKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGL
MDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALE
IMVKFSPEPHLAQTVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTL
CALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTE
GPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHS
QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST
WEGDRNLAPSFVNEDGVE"
CDS 5043..6665
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AVI57663.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDITHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6665..>7450
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AVI57664.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWNGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTIVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRK"
ORIGIN
1 gaagttggca cgcacaacga catcgcaaat cttcagtgac ggtgtgtttt ctaacatggc
61 tgtcactttt aagcgggccc tcggggcgcg gcctaaacag ccgcccccga aggaaatacc
121 acccagaccc ccgcgaccac ccacaccaga attggtcaaa aagatccctc ctcccccacc
181 caacggggag gatgaactag tggtctctta cagcgccaaa gatggcgttt ccggactgcc
241 tgagctcacc actgtcagac aaccggaaga aaccaacacg gcgttcagtg tccccccact
301 caaccaaagg gagagcaggg acgccaagga gccactaact ggaacaatca ttgaaatgtg
361 ggatggagaa atctaccatt acggcctgta cgtggaacga ggtcttatac ttggtgtgca
421 caagccaccg gcagccatta gccttgccaa ggtcgagcta gcaccgctct ctttgttctg
481 gagacctgta tacacccccc agtatctcat ctctccagac actcttagga gattacatgg
541 agagtcattc ccctacactg catttgacaa caattgctac gccttttgtt gttgggtatt
601 agacctaaac gactcatggc taagcaggag aatgattcag agaacaacag gcttcttcag
661 gccgtaccag gattggaaca ggaaacccct ccccactatg gatgattcca aattaaagaa
721 ggtagccaac atattcttgt gcactttgtc ttcactattc accagaccca ttaaggacat
781 aatagggaag ttgaaacctc ttaacatcct taacattctg gctacatgtg attggacctt
841 cgcaggcata gtggaatcct taatactctt ggcagaactc tttggagttt tctggacacc
901 cccagatgtg tctgcgatga tcgccccctt gctaggtgat tatgaattgc aaggacctga
961 ggaccttgca gtggaactgg tcccaatagt gatggggggg ataggtttgg tgctaggatt
1021 taccaaagag aaaatcggaa agatgctatc atccgctgca tccactttaa gagcttgtaa
1081 agaccttggt gcatacggac tggaaatctt aaaattggtc atgaagtggt tcttcccaaa
1141 gaaagaggaa gcaaatgaac tggctatggt gagatccatc gaggatgcag tactagacct
1201 cgaggcaatt gaaaacaacc acatgaccac cctactcaaa gacaaagaca gcttggcaac
1261 ctacatgaga acccttgacc ttgaggagga gaaagccaga aaactctcaa ccaaatctgc
1321 ttcacccgat attgtgggca caatcaactc tcttctggca agaatcgctg ctgcacgctc
1381 cctagtgcat cgggcgaaag aagagctctc cagcaggccg agacctgtcg ttgtgatgat
1441 atcgggaaga ccagggatag ggaaaactca ccttgccagg gagctggcca agaagatcgc
1501 ggcctccctc acaggggacc agcgtgtggg tcttatccca cgcaatggtg tcgaccactg
1561 ggacgcatac aagggcgaaa gagttgtcct atgggacgac tatggaatga gcaaccccat
1621 ccatgatgcc ctcaggttgc aggagcttgc tgacacttgc cccctcacgc taaattgtga
1681 tagaattgag aacaaaggga aagtctttga cagtgatgcc ataattatca ccaccaatct
1741 ggccaaccca gcaccactgg attatgtcaa ctttgaagcg tgctcgagac gcattgattt
1801 cctcgtgtac gcagaagccc ctgaggtgga gaaggcaaag cgcgacttcc caggtcaacc
1861 tgacatgtgg aagaacgctt tcagtcctga cttctcacac ataaaactgt cattggctcc
1921 acagggtggt tttgacaaga acggcaacac cccgcatgga aaaggggtca tgaagaccct
1981 caccactggc tccctcatcg cccgagcatc agggttactc catgagaggc tagatgaata
2041 tgaactgcaa ggcccagccc tcaccacttt caactttgac cgcaacaaga tacttgcttt
2101 tagacagctt gctgctgaaa acaagtatgg gctgatggac acaatgagag ttggaaaaca
2161 gctcaaggat gtcaagacca tgtcagacct caaacaagca ctcaagaaca tcgcgatcaa
2221 gaagtgccag atagtgtaca atggtggcac ctacacactt gaggctgatg gcaagggtgg
2281 tgtgaaagtt gacaaagtgc aaagtgccac tgtgcagacc aacaatgaac tagccggtgc
2341 cctacaccac ctaaggtgcg ctagaatcag atactatgtt aagtgcgtcc aggaggcact
2401 gtattccatc atccaaatcg ctggggctgc gttcgtcact acgcgcatcg ctaagcgcat
2461 gaatatacag aatctctggt ccaagccaca ggtggaagac acagaagaga tggccaacaa
2521 agatggttgc ctaaaaccca aagatgatga agagtttgtc gtctcatccg acgacatcaa
2581 aactgagggc aagaaaggga agaacaagtc cggccgtggc aagaagcaca cagccttttc
2641 aagtaaaggg ctcagtgatg aggagtacga tgagtacaag agaatcagag aagaaaggaa
2701 tggtaagtac tccatagaag agtaccttca ggacagagac aggtactacg aggaggtggc
2761 cattgccagg gcaaccgaag aggacttctg tgaagaagaa gaggccaaaa tccggcagag
2821 aattttcaga ccaacaagga aacaacgcaa agaagagagg gcctctctcg gcttggtcac
2881 aggctctgaa atcaggaaga gaaacccaga agacttcaaa cccaagggaa agctgtgggc
2941 tgatgatgac aggagcgttg actacaatga gaaactcaac tttgaggccc caccaagcat
3001 ctggtcgcgg atagtcaact ttggttcagg ctggggcttc tgggtctccc ccagtctgtt
3061 tataacatca acccatgtca taccccaagg tgcaaaagag ttcttcggag tccctatcaa
3121 gcaaatccag atacacaagt caggtgaatt ctgccggttg agattcccaa agccaatcag
3181 gactgatgtg acgggcatga ttctagaaga aggtgcgccc gaggggaccg tggccacact
3241 gctcatcaag agaccaactg gagagctcat gcctctggca gccagaatgg ggacccatgc
3301 aactatgaaa attcaggggc gcacagttgg agggcaaatg ggtatgctcc tgacaggatc
3361 caacgccaag agtatggacc taggcacaac accaggcgac tgcggctgcc cctacatcta
3421 caagaggggg aatgactacg tggtcatagg agtccacacg gccgctgccc gtggaggaaa
3481 cactgtcata tgtgccaccc aggggagtga gggagaagcc acacttgaag gaggtgacag
3541 taaagggaca tactgtggcg caccaatctt gggcccaggg agcgctccga agctcagtac
3601 caagactaag ttttggagat catccacaac accactccca cctggcacct acgaaccagc
3661 ctacctcggt ggcaaagacc ctagagtcaa aggtggccct tcattgcaac aagttatgag
3721 ggaccagctg aagccattca cagaacccag aggcaaacca ccaagaccaa atgtgttgga
3781 agctgccaag aaaaccatca tcaatgtcct tgagcaaaca attgatccac cccaaaaatg
3841 gtcatttgcg caagcttgcg catcccttga caaaaccacc tccagcggcc acccgcacca
3901 catgcggaag aacgactgtt ggaatgggga gtccttcaca ggaaaattgg ctgatcaagc
3961 ctccaaggcc aacctaatgt ttgaagaggg aaagaacatg actccagtct acacaggtgc
4021 acttaaagat gagttggtga agaccgataa agtttatggt aaggtcaaga agaggcttct
4081 gtggggttca gatctggcga ccatgatacg gtgcgcccga gcttttggag gccttatgga
4141 tgaactcaag gcacactgtg tcacacttcc tgtcagagtt ggtatgaaca tgaatgagga
4201 tggtcccatc atctttgaga agcactccag atatagatat cactatgatg ctgattattc
4261 ccggtgggac tcaacacaac aaagggatgt gctagcagca gcactagaaa tcatggttaa
4321 gttctctcca gaaccacacc tggcccagac agttgcagaa gacctccttt cccctagcgt
4381 gatggatgta ggtgactttc aaatatcaat aagtgagggt ctcccctctg gggtaccttg
4441 tacctcccag tggaattcca tcgcccactg gctcctcact ctgtgtgcac tctctgaagt
4501 cacggacctg tcccctgata tcattcaggc caactccctt ttctccttct atggtgatga
4561 tgagattgta agcacagaca taaaattgga cccagagaag ctgacagcaa agctcaagga
4621 gtacgggctg aaaccaaccc gccccgacaa aactgaagga ccccttgtta tctctgaaga
4681 cctggatggc ctgacattcc tccggagaac tgtgacccgt gatccagctg gctggtttgg
4741 aaaattggaa caaagttcaa ttctcaggca aatgtactgg accaggggtc ccaaccatga
4801 agatccattt gaaacaatga taccacactc ccaaagaccc atacaattga tgtccttgct
4861 gggcgaggct gcgctccacg gcccggcatt ctatagcaaa attagcaaat tagtcattgc
4921 agagttgaag gaaggtggca tggattttta cgtacccaga caagagccaa tgttcagatg
4981 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
5041 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccgcagcc aacctcgtcc
5101 cagaggtcaa caatgaggtt atggctctgg agcccgttgt tggtgccgcc attgcggcac
5161 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aaataatttt gtacaagccc
5221 ctggtggaga gtttacagta tcccctagaa acgctccagg tgaaatacta tggagcgcgc
5281 ccttgggccc tgatctaaac ccctacttat cccatttggc cagaatgtac aatggttatg
5341 caggtggttt tgaagtgcag gtaattctcg cggggaacgc gttcaccgcc gggaaggtca
5401 tatttgcagc agtcccacca aactttccaa ctgaaggctt gagccccagc caggtcacta
5461 tgttccccca tatagtagta gatgttaggc aactagaacc tgtgttgatt cccttacccg
5521 atgttaggaa taatttctat cattacaatc aatcaaatga ccccaccatt aagttgatag
5581 caatgttgta tacaccactt agggctaata atgctgggga tgatgtcttc acagtttctt
5641 gccgagttct cacgagacca tcccccgatt ttgatttcat atttctagtg ccacccacag
5701 ttgagtcaag aactaaacca ttctctgtcc cagttttaac tgttgaggag atgaccaatt
5761 caagattccc cattcctttg gaaaagttgt tcacgggtcc cagcagtgcc tttgttgtcc
5821 aaccacaaaa cggtaggtgc acgactgatg gcgtgctcct aggcaccacc caactgtctc
5881 ctgtcaacat ctgcaccttc agaggagata tcacccatat cacaggtagt cgtaactaca
5941 caatgaattt ggcttctcaa aattggagca attatgaccc aacagaagaa atcccagccc
6001 ctctaggaac tccagatttt gtggggaaga ttcaaggcgt gctcacccaa accacaagga
6061 cagatggctc aacacgcggc cacaaagcca cagtgtacac tgggagcgcc gactttgctc
6121 caaaactggg tagagttcaa tttgaaactg acacagacca tgattttgaa gctaaccaaa
6181 acacaaaatt caccccagtt ggtgtcatcc aagatggtgg caccacccac cgaaatgaac
6241 cccaacagtg ggtgctccca agttactcag gcagaaatac tcctaatgtg catctggccc
6301 ccgctgtagc ccccactttt ccgggtgagc aacttctctt cttcagatcc accatgcccg
6361 gatgcagcgg gtaccccaac atggatttgg actgtctgct cccccaggaa tgggtgcagt
6421 acttctacca agaggcagcc ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc
6481 cagacacagg tagggttttg tttgagtgta agcttcataa atcaggctat gttacagtgg
6541 ctcacactgg ccaacatgat ttggttatcc cccccaatgg ttattttagg tttgattcct
6601 gggtcaacca gttttacacg cttgccccca tgggaaatgg aacggggcgt agacgtgcac
6661 tataatggct ggagctttct ttgctggatt ggcatctgat gtccttggct ctggacttgg
6721 ttcccttatc aatgctgggg ctggggccat caaccaaaaa gttgagtttg aaaataatag
6781 aaaattgcaa caagcatcct tccaatttag cagcaatcta caacaggctt ccttccaaca
6841 tgacaaagag atgctccaag cacaaattga ggcaaccaaa aggctacaac aggaaatgat
6901 gaaagttaag caggcaatgc tcctagaggg tgggttctct gagacagatg cagcccgcgg
6961 ggcaatcaac gcccccatga caaaagcttt ggactggaac gggacaaggt actgggctcc
7021 cgatgctagg actacaacat acaatgcagg ccgcttttcc acccctcaac catcgggggc
7081 actgccagga agagctaatc ttagggatgc tgtccctgct cggggttcct ccagtaagtc
7141 ttctaattct tctactgcta cttctgtgta ctcaaatcaa actacttcaa cgagacttgg
7201 ttctacagct ggttctggta ccattgtctc gagcttcccg tcaactgcaa ggactaggag
7261 ctgggtcgag gatcaaagta ggaatttgtc acctttcatg aggggggccc acaacatatc
7321 gtttgtcacc ccaccatcta gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa
7381 agagattttg gactcctgga ctggcgcttt caacacgcgc aggcagcctc tcttcgctca
7441 cattcgcaag
//