Typing tool
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Typing tool
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Complete norovirus genomes
| MG601452 | GII.3 | |
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| GII.P12 |
ORF1: 1..722
ORF2: 703..2349
ORF3: 2349..3113
LOCUS MG601452 3195 bp RNA linear VRL 28-JUL-2018
DEFINITION Norovirus GII isolate HNZZ1040, partial genome.
ACCESSION MG601452
VERSION MG601452.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3195)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Genomic and biochemical characterization of GII.3 Norovirus
isolated from children of Zhengzhou city, Henan province, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3195)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2017) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, Jingguang Road No. 29,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3195
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HNZZ1040"
/db_xref="taxon:122929"
/note="type: GII.3"
CDS <1..722
/codon_start=3
/product="RdRp protein"
/protein_id="AXF54250.1"
/translation="AQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMI
PHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSD
LSTWEGDRNLAPSFVNEDGVE"
CDS 703..2349
/codon_start=1
/product="VP1 protein"
/protein_id="AXF54251.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
CDS 2349..3113
/codon_start=1
/product="VP2 protein"
/protein_id="AXF54252.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tggcccaaaa ggttgcagaa gaccttcttt ctcccagcgt gatggacgtg ggtgatttca
61 aaatatcaat caatgagggt ctcccctccg gagtgccctg cacctcccaa tggaattcca
121 tcgcccactg gctcctcact ctctgtgcac tctctgaggt tacaaacctg tcccctgaca
181 ttattcaggc taactctctc ttttctttct acggtgatga tgaaattgtg agtacagata
241 taaaattgga cccagaaaaa ctgacagcaa aactcaagga atacgggttg aaaccgaccc
301 gccctgacaa aactgaaggg cctcttgtca tttccgaaga cctgaatggc ctaaccttcc
361 tgcggaggac cgtgactcgc gacccagcag gctggtttgg aaagttggaa cagagctcaa
421 tactcagaca aatgtactgg actaggggcc ccaaccatga agatccatct gaaacaatga
481 taccacactc ccagaggccc atacaattga tgtctttgct gggtgaggca gcactccacg
541 gcccagcatt ctacagcaaa atcagtaaac tggtcattgc agagttgaag gagggtggca
601 tggattttta cgtgccaaga caagagccaa tgttcagatg gatgagattc tcggatctga
661 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
721 gacgccaccc catctaatga tggtgccgcc ggcctcgtcc cagagatcaa caatgaggca
781 atggcgctag atccagtggc gggtgcagcg atagcagcac ccctcaccgg ccagcaaaat
841 ataattgatc cctggattat gaataatttt gtgcaagcac ctggtggtga gttcacagtg
901 tctcctagga attcccctgg tgaagtgctc ctcaatttgg aattgggccc agagataaac
961 ccctatctgg cccatcttgc tagaatgtat aatggttatg caggtgggtt tgaagtgcag
1021 gtagtcctgg ctggaaatgc gtttacagca ggaaagataa tctttgcagc tataccccct
1081 aacttcccaa ttgacaatct aagtgcagca cagatcacaa tgtgcccaca tgtgattgtg
1141 gatgtcaggc agctggaacc ggtcaacctc ccgatgcctg acgttcgcaa taacttcttc
1201 cactacaacc aagggtctga ttcgagattg cgcttggttg caatgctgta tacacctctt
1261 agggcaaata actctgggga tgatgttttc actgtgtctt gtagagtgct gactagacct
1321 agtcctgaat tttcatttaa cttccttgtg ccacccactg tggagtcaaa gacaaaacct
1381 tttaccctcc caattctgac tatctctgaa atgtctaatt ctaggtttcc agtgccgatt
1441 gattctctgc acaccagccc aactgagaat attgtcgtcc agtgtcaaaa tggacgcgtc
1501 actcttgatg gcgagttgat gggcaccact cagctcttac ctagtcaaat ctgtgctttc
1561 aggggcgtgc tcactagatc aacaagcagg gctagtgacc aggccgatac agcaacccct
1621 agattgttta attattattg gcacatacaa ttggataatc taaatgggac tccttatgat
1681 cctgcagaag acataccagg ccccctaggg acaccagatt tccggggcaa agtctttggc
1741 gtggccagcc aaagaaaccc cgacagtaca actagagcac atgaagcaaa ggtggacaca
1801 acagctggtc gcttcacccc aaaactaggc tcattagaga tatccactga atctggtgac
1861 tttgaccaaa accaaccaac aagattcacc ccagttggca ttggggttga ccacgagtca
1921 gacttccagc aatggtcctt acccgattac tctggccagt tcactcacaa catgaactta
1981 gccccagctg ttgctcccaa cttccctggt gagcagctcc ttttcttccg ctcacagtta
2041 ccatcttctg gtgggcgatc caatgggatt ctagattgcc tggtccccca agaatgggtc
2101 cagcacttct accaagaatc agcccccgcc caaacccagg tggctctggt tagatatgtc
2161 aaccctgaca ctggtagagt gttgtttgag gccaagctgc acaaattagg tttcatgact
2221 atagctaaga atggtgactc tccaataact gtccccccaa atggatactt taggtttgaa
2281 tcttgggtga acccatttta cacacttgcc cccatgggaa ctgggaatgg gcgtagaaga
2341 gttcaataat ggctggtgct tttatagcag gattagctgg tgatatgctc acaaatactg
2401 tagggtctct agttaatgca ggggctaatg ctattaatca aaaagttgat tttgaaaata
2461 ataaatactt gcaaaatgct tccttcaatc acgataagga aatgttaaat gcacagattg
2521 aggcaacaaa gagattacag gctgatatga ttgctatcaa acagggggtt ttgaccgctg
2581 gcggcttttc ccccactgat gcagctcgcg gggcaatcaa cgcccccatg acaaaagtcc
2641 tagattggaa tggaacaagg tactgggcac caagtgccac ctctacaacc tcgatgtcgg
2701 gtggcttcac aaaccaggct gtgcacagaa ccacgccaaa ttttaaaatg aaccaggccc
2761 ccagatccac acccagcagt gggtcttcag tgaggtcact ctcaacccaa gtcactagtc
2821 tgagctcaca ctcgtccggg tcgtctcgat ccagcgggtc tacagttgct agctcattac
2881 catcctctaa caggactagg gactgggtca atcagcaaaa tttcaatttg gaaccacaca
2941 tgcctgggtc acttaggacg gcttttgtca ctccaccatc tagtacagcc tctagttcag
3001 gcactgtctc aaccgtgccc aaaaatgttt tggactcctg gacatctgcg tttaacacgc
3061 gcagacagcc gctattcgca caccttcgta gaagggggga gtcaaatgtt tagtgaaaag
3121 gttatcttaa atttgattta aattgaattt gatttggaat cttttaaaaa aaaaaaaaaa
3181 aaaaaaaaaa aaaaa
//