Typing tool
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Typing tool
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Complete norovirus genomes
| MG601450 | GII.3 | |
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| GII.P12 |
ORF1: 1..722
ORF2: 703..2349
ORF3: 2349..3113
LOCUS MG601450 3178 bp RNA linear VRL 28-JUL-2018
DEFINITION Norovirus GII isolate HNZZ1234, partial genome.
ACCESSION MG601450
VERSION MG601450.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3178)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Genomic and biochemical characterization of GII.3 Norovirus
isolated from children of Zhengzhou city, Henan province, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3178)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2017) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, Jingguang Road No. 29,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3178
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HNZZ1234"
/db_xref="taxon:122929"
/note="type: GII.3"
CDS <1..722
/codon_start=3
/product="RdRp protein"
/protein_id="AXF54244.1"
/translation="AQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMI
PHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSD
LSTWEGDRNLAPSFVNEDGVE"
CDS 703..2349
/codon_start=1
/product="VP1 protein"
/protein_id="AXF54245.1"
/translation="MKMASNDAAPSNDGAAGLVPETNNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2349..3113
/codon_start=1
/product="VP2 protein"
/protein_id="AXF54246.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNSGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRPTPNFKTNQAPKPTPNSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNA"
ORIGIN
1 tggcccaaaa ggttgcagaa gaccttcttt ctcccagcgt gatggacgtg ggtgatttca
61 agatatcaat caatgagggt ctcccctccg gggtgccctg cacctcccaa tggaattcca
121 tcgcccactg gctcctcact ctctgtgcac tctctgaggt cacaaacctg tcccctgaca
181 tcattcaggc caactctctc ttttctttct acggtgatga tgaaattgtg agcacagaca
241 taaaattgga cccagaaaaa ctgacagcaa aactcaagga atacgggttg aaaccaaccc
301 gccctgacaa gactgaagga ccacttgtca tctctgagga cctggatggt ctaactttcc
361 tgcggaggac cgtgacccgc gacccagcgg gctggtttgg aaagttggaa cagagttcaa
421 tacttagaca aatgtactgg actaggggtc ccaaccatga agacccatct gaaacaatga
481 taccacattc ccagaggccc atacaattga tgtctttgct gggtgaggct gcgctccacg
541 gcccagcatt ctatagcaaa ataagtaaac tggtcattgc agagttgaag gaaggtggca
601 tggattttta cgtgccaaga caagaaccaa tgttcagatg gatgagattc tcggatctga
661 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
721 gacgctgctc catccaatga tggtgctgcc ggcctcgtcc cagagaccaa caatgaggca
781 atggcgctag aaccagtggc gggtgcagcg atagcagcac ccctcactgg tcagcagaat
841 ataattgatc cctggattat gaataatttt gtgcaagcac ctggtggtga gtttacagta
901 tctcctagaa attcccctgg tgaagttctt ctcaatttgg aattgggtcc agaaataaat
961 ccctatttgg ctcatcttgc tagaatgtat aatggttatg caggtggatt tgaagtgcag
1021 gtggtcctag ctggaaatgc gtttacagca ggaaagataa tctttgcagc tattccccct
1081 aattttccaa ttgataatct aagtgcagca cagatcacaa tgtgtccaca tgtgattgtg
1141 gatgtcaggc agctggaacc agtcaatctc ccgatgcctg acgttcgcaa taatttcttc
1201 cattacaatc aagggtctga ttcgagattg cgcctaattg caatgctgta tacacctctt
1261 agggcaaata actctgggga tgatgttttt actgtgtcct gcagagtgtt aactagacct
1321 agccctgact tctcatttaa ctttcttgtg ccacccacag tggagtcaaa gacaaaaccc
1381 ttttccctcc ctattctgac tatctccgaa atgtccaatt ctaggttccc agtaccaatt
1441 gattctctgc acactagtcc tactgagaac attgttgtcc agtgtcaaaa tggacgagtc
1501 acccttgatg gtgagttgat gggcaccacc caactcttac ctagccaaat ttgtgccttc
1561 aggggcacgc tcaccagatc aacaagcagg gccagtgacc aggctgacac agcaacccct
1621 agattgttta attattattg gcatatacaa ttggataacc taaatggaac tccttatgac
1681 cctgcagaag atataccagg ccccctaggg acaccagatt tccggggcaa agtctttggt
1741 gtggccagcc agagaaatcc tgacgccacg actagggcac acgaagcaaa aatagacaca
1801 acatctggcc gcttcacccc aaaattaggt tcactggaga tttccactga gtctggagat
1861 ttcgaccaaa accaaccaac aagattcacc ccagttggca taggggttga ccatgaatca
1921 gactttcaac aatgggctct tcccgactat gcaggccagt tcacccacaa catgaactta
1981 gccccagctg ttgcccccaa cttccctggt gagcagctcc ttttcttccg ctcacagttg
2041 ccatcttctg gtgggcggtc caacgggatt ctagactgcc tggtccccca agaatgggtg
2101 cagcatttct accaagaatc agccccctcc caaactcaag tggccctagt taggtatgtc
2161 aaccctgaca ctggcagagt gttatttgag gccaagttgc acaaattagg tttcatgacc
2221 atagccaaga gtggtgactc cccgataact gtccccccaa atggatactt taggtttgaa
2281 tcttgggtga acccctttta tacacttgcc cccatgggaa ctgggaatgg gcgtagaagg
2341 atccaataat ggctggagct tttatagcag gattggctgg tgacatgctc acaaatactg
2401 taggatcttt agttaattca ggggctaacg ccattaatca aacaattgat tttgaaaata
2461 ataaatattt gcaaaatgcc tccttcaatc atgataagga gatgttgaat gcacaaattg
2521 aggcaacaaa gaggttacag gctgacatga ttgctatcaa acaaggggtt ttgaccgccg
2581 gcggcttctc ccctactgat gcagcccgcg gggcaattaa tgcccccatg acaaaagtcc
2641 tagattggaa cggaacgaga tactgggcac caggtgccac ctccacaacc tcgatgtcgg
2701 gtggcttcac gaatcaaact gtgcatagac ccacaccaaa ttttaaaacg aaccaggccc
2761 ccaaacccac ccccaacagt gggtcttcag tgaggtcaaa ttcaacccaa atcaccagcc
2821 tgagttcaca ctcgtccggg tcgtctcgat ccagcgggtc tacagttgtc agctcaatac
2881 catcctctaa caggactagg gattgggtta accaacagaa ttttaatctg gaaccacaca
2941 tgcctggatc tcttaggaca gcttttgtca ctccaccatc tagtacagcc tctagctcag
3001 gcacagtctc aactgtgccc aaaaatgttt tggactcctg gacatctgcg tttaacacgc
3061 gcagacagcc gctattcgca caccttcgca gaagggggga gtcaaatgct tagtgaaaag
3121 attattttaa gtttggctta aactgggatt tatttggaat cttttaaaaa aaaaaaaa
//