Typing tool
|
Complete norovirus genomes
MG601449 | GII.3 | ||
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GII.P12 |
ORF1: 1..722 ORF2: 703..2349 ORF3: 2349..3113LOCUS MG601449 3194 bp RNA linear VRL 28-JUL-2018 DEFINITION Norovirus GII isolate HNZZ1029, partial genome. ACCESSION MG601449 VERSION MG601449.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3194) AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y. TITLE Genomic and biochemical characterization of GII.3 Norovirus isolated from children of Zhengzhou city, Henan province, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 3194) AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y. TITLE Direct Submission JOURNAL Submitted (04-DEC-2017) Center for Translational Medicine, The Sixth People's Hospital of Zhengzhou, Jingguang Road No. 29, Zhengzhou, Henan 450000, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3194 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="HNZZ1029" /db_xref="taxon:122929" /note="type: GII.3" CDS <1..722 /codon_start=3 /product="RdRp protein" /protein_id="AXF54241.1" /translation="AQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWL LTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMI PHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSD LSTWEGDRNLAPSFVNEDGVE" CDS 703..2349 /codon_start=1 /product="VP1 protein" /protein_id="AXF54242.1" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ" CDS 2349..3113 /codon_start=1 /product="VP2 protein" /protein_id="AXF54243.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 tggcccaaaa ggttgcagaa gaccttcttt ctcccagcgt gatggacgtg ggtgatttca 61 aaatatcaat caatgagggt ctcccctccg gagtgccctg cacctcccaa tggaattcca 121 tcgcccactg gctcctcact ctctgtgcac tctctgaggt tacaaacctg tcccctgaca 181 ttattcaggc taactctctc ttttctttct acggtgatga tgaaattgtg agtacagaca 241 taaaattgga cccagaaaaa ctgacagcaa aactcaagga atacgggttg aaaccgaccc 301 gccctgacaa aactgaaggg cctcttgtca tttccgaaga cctgaatggc ctaaccttcc 361 tgcggaggac cgtgactcgc gacccagcag gctggtttgg aaagttggaa cagagctcaa 421 tactcagaca aatgtactgg actaggggcc ccaaccatga agatccatct gaaacaatga 481 taccacactc ccagaggccc atacaattga tgtctttgct gggtgaggca gcactccacg 541 gcccagcatt ctacagcaaa atcagtaaac tggtcattgc agagttgaag gagggtggca 601 tggattttta cgtgccaaga caagagccaa tgttcagatg gatgagattc tcggatctga 661 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat 721 gacgccaccc catctaatga tggtgccgcc ggcctcgtcc cagagatcaa caatgaggca 781 atggcgctag atccagtggc gggtgcagcg atagcagcac ccctcaccgg ccagcaaaat 841 ataattgatc cctggattat gaataatttt gtgcaagcac ctggtggtga gttcacagtg 901 tctcctagga attcccctgg tgaagtgctc ctcaatttgg aattgggccc agagataaac 961 ccctatctgg cccatcttgc tagaatgtat aatggttatg caggtgggtt tgaagtgcag 1021 gtagtcctgg ctggaaatgc gtttacagca ggaaagataa tctttgcagc tataccccct 1081 aacttcccaa ttgacaatct aagtgcagca cagatcacaa tgtgcccaca tgtgattgtg 1141 gatgtcaggc agctggaacc ggtcaacctc ccgatgcctg acgttcgcaa taacttcttc 1201 cactacaacc aagggtctga ttcgagattg cgcttggttg caatgctgta tacacctctt 1261 agggcaaata actctgggga tgatgttttc actgtgtctt gtagagtgct gactagacct 1321 agtcctgaat tttcatttaa cttccttgtg ccacccactg tggagtcaaa gacaaaacct 1381 tttaccctcc caattctgac tatctctgaa atgtctaatt ctaggtttcc agtgccgatt 1441 gattctctgc acaccagccc aactgagaat attgtcgtcc agtgtcaaaa tggacgcgtc 1501 actcttgatg gcgagttgat gggcaccact cagctcttac ctagtcaaat ctgtgctttc 1561 aggggcgtgc tcactagatc aacaagcagg gctagtgacc aggccgatac agcaacccct 1621 agattgttta attattattg gcacatacaa ttggataatc taaatgggac tccttatgat 1681 cctgcagaag acataccagg ccccctaggg acaccagatt tccggggcaa agtctttggc 1741 gtggccagcc aaagaaaccc cgacagtaca actagagcac atgaagcaaa ggtggacaca 1801 acagctggtc gcttcacccc aaaactaggc tcattagaga tatccactga atctgatgac 1861 tttgaccaaa accaaccaac aagattcacc ccagttggca ttggggttga ccacgagtca 1921 gacttccagc aatggtcctt acccgattac tctggccagt tcactcacaa catgaactta 1981 gccccagctg ttgctcccaa cttccctggt gagcagctcc ttttcttccg ctcacagtta 2041 ccatcttctg gtgggcgatc caatgggatt ctagattgcc tggtccccca agaatgggtc 2101 cagcacttct accaagaatc agcccccgcc caaacccagg tggctctggt tagatatgtc 2161 aaccctgaca ctggtagagt gttgtttgag gccaagctgc acaaattagg tttcatgact 2221 atagctaaga atggtgactc tccaataact gtccccccaa atggatactt taggtttgaa 2281 tcttgggtga acccatttta cacacttgcc cccatgggaa ctgggaatgg gcgtagaaga 2341 gttcaataat ggctggtgct tttatagcag gattagctgg tgatatgctc acaaatactg 2401 tagggtctct agttaatgca ggggctaatg ctattaatca aaaagttgat tttgaaaaca 2461 ataaatattt gcaaaatgct tccttcaatc acgataagga aatgttaaat gcacagattg 2521 aggcaacaaa gagattacag gctgatatga ttgctatcaa acagggggtt ttgaccgctg 2581 gcggcttttc ccccactgat gcagctcgcg gggcaatcaa cgcccccatg acaaaagtcc 2641 tagattggaa tggaacaagg tactgggcac caagtgccac ctctacaacc tcgatgtcgg 2701 gtggcttcac aaaccaggct gtgcacagaa ccacgccaaa ttttaaaatg aaccaggccc 2761 ccagatccac acccagcagt gggtcttcag tgaggtcact ctcaacccaa gtcactagtc 2821 tgagctcaca ctcgtccggg tcgtctcgat ccagcgggtc tacagttgct agctcattac 2881 catcctctaa caggactagg gactgggtca atcagcaaaa tttcaatttg gaaccacaca 2941 tgcctgggtc acttaggacg gcttttgtca ctccaccatc tagtacagcc tctagttcag 3001 gcactgtctc aaccgtgccc aaaaatgttt tggactcctg gacatctgcg tttaacacgc 3061 gcagacagcc gctattcgca caccttcgta gaagggggga gtcaaatgtt tagtgaaaag 3121 gttatcttaa atttgattta aattgaattt gatttggaat cttttaaaaa aaaaaaaaaa 3181 aaaaaaaaaa aaaa //