Typing tool
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Typing tool
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Complete norovirus genomes
| MG601447 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS MG601447 7556 bp RNA linear VRL 28-JUL-2018
DEFINITION Norovirus GII isolate HNZZ0909, complete genome.
ACCESSION MG601447
VERSION MG601447.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7556)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Genomic and biochemical characterization of GII.3 Norovirus
isolated from children of Zhengzhou city, Henan province, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7556)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2017) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, Jingguang Road No. 29,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HNZZ0909"
/db_xref="taxon:122929"
/note="type: GII.3"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AXF54259.1"
/translation="MKMASNDASAAAAAYSNNDNAKSSSDGVLSSMAVTFKRALGARQ
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/codon_start=1
/product="VP1 protein"
/protein_id="AXF54260.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDHADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
CDS 6731..7495
/codon_start=1
/product="VP2 protein"
/protein_id="AXF54261.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKALDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRPSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgcttata gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcaaaaac agcctccccc gagggaaata ccacaaaggc ctccacggcc
181 acccacccca gaactggtca aaaagatccc tcctccccca cccaatgggg aggatgaact
241 agtggtctct tatagcgcca aagatggcgt ttctggtttg cctgaactta ccactgtctg
301 gcaaccggat gagaccaaca cggcattcag tgttccccct ctcaaccaga gggagaacag
361 ggacgccaag gagccgctga ccggaacaat tctggaaatg tgggacgggg agatctatca
421 ttatggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaac tagcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agagaacaac tggcttcttc agaccttacc aagaatggaa
721 caggaaaccc ctccccacca tggatgactc taaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatgggag ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatccgctg cttccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 gctggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 gctagctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga ggacccttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaattaac gctcttctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaagatc gcagcttcac tcacagggga
1561 ccagcgcgtg ggtctcatcc ctcgcaatgg cgttgaccac tgggatgcat ataagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctagccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccgcagggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
2101 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtat ggactgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaaaag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga gcttgccggc gcactacacc atcttaggtg
2401 cgccagaatc agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 cgctggggct gcatttgtta ccacgcgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggagg acacagagga aatcgctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagtttg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcattt tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaattag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaggtatta tgaggaggtg gccatcgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacag aggatcttca ggccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gaaagactca actttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgtacccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaaggaac cgtggtcaca ttactcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccagaat gggaacccac gcaaccatga agatacaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3481 cgtggtcatt ggggtccata cagctgccgc ccgtggagga aacactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 agcaccaatc ttaggtccag gaagtgcccc aaaactcagc accaagacca agttctggag
3661 atcatccacg gcaccactcc cacctggtac ctatgaacca gcttacctcg gtggcaagga
3721 ccccagagtt aagggtggcc cttcactgca acaagttatg agggatcaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3841 cgtcaatgtc ctagaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatcccta gacaagacca cttctagcgg ccatccgcac cacatgcgga agaatgactg
3961 ctggaacggg gagtccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgata cggtgcgctc gagcattcgg gggtctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4321 acaaagagcc gtgttggcag cagccttaga aatcatggtc aagttttccc cagagccaca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgag gttacaaacc tgtcccctga
4561 cattattcag gctaactctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aaaactgaag ggcctcttgt catttccgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagctc
4801 aatactcaga caaatgtact ggactagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagca ttctacagca aaatcagtaa actggtcatt gcagagttga aggagggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac cccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcacc ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag gaattcccct ggtgaagtgc tcctcaattt ggaattgggc ccagagataa
5341 acccctatct ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct ggctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaacttccc aattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagctggaa ccggtcaacc tcccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tatacacctc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5701 ctagtcctga attttcattt aacttccttg tgccacccac tgtggagtca aagacaaaac
5761 cttttaccct cccaattctg actatctctg aaatgtctaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgccaa aatggacgcg
5881 tcactcttga tggcgagttg atgggcacca ctcagctctt acctagtcaa atctgtgctt
5941 tcaggggcgt gctcactaga tcaacaagca gggctagtga ccacgccgac acagcaaccc
6001 ctagattgtt taattattat tggcacatac aattggataa tctaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctag ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccaaagaaac cccgacagta caactagggc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gctcattaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccacgagt
6301 cagacttcca gcaatggtcc ttacccgatt actctggcca gttcactcac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 taccatcttc tggtgggcga tccaatggga ttctagattg cctggtcccc caggaatggg
6481 tccagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctttg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tacacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggtg cttttatagc aggattagct ggtgatatac tcacaaatac
6781 tgtagggtct ctagttaatg caggggctaa tgctattaat caaaaagttg attttgaaaa
6841 taataaatac ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacagat
6901 tgaggcaaca aagagattac aggctgatat gattgctatc aaacaggggg ttctgaccgc
6961 tggcggcttt tcccccactg atgcagctcg cggggcaatc aacgccccca tgacaaaagc
7021 cctagattgg aatggaacaa ggtactgggc accaagtgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa tgaaccaggc
7141 ccccagatcc acacccagca gtgggtcttc agtaaggtca ctctcaaccc aagtcactag
7201 tctgagctca cactcgtccg ggtcgtctcg acccagcggg tctacagttg ctagctcatt
7261 accatcctct aacaggacta gggactgggt caatcagcaa aatttcaatt tggaaccaca
7321 catgcctggg tcacttagga cggcttttgt cactccacca tctagtacag cctctagttt
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacag ccgctattcg cacaccttcg tagaaggggg gagtcaaatg tttagtgaaa
7501 aggttatctt aaatttgatt taaattggat ctgatttgga atcttttaaa aaaaaa
//