Typing tool
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Typing tool
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Complete norovirus genomes
| MG601446 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS MG601446 7571 bp RNA linear VRL 28-JUL-2018
DEFINITION Norovirus GII isolate HNZZ0953, complete genome.
ACCESSION MG601446
VERSION MG601446.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7571)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Genomic and biochemical characterization of GII.3 Norovirus
isolated from children of Zhengzhou city, Henan province, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7571)
AUTHORS Huo,Y., Liu,J., Zheng,L. and Wang,Y.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2017) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, Jingguang Road No. 29,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7571
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HNZZ0953"
/db_xref="taxon:122929"
/note="type: GII.3"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AXF54256.1"
/translation="MKMASNDASAAAAANSNNDNEKSSSDGVLSSMAVTFKRALGARH
KQPPPREAPQRPPRPSTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELVPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKINKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/codon_start=1
/product="VP1 protein"
/protein_id="AXF54257.1"
/translation="MKMASNDPTPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
CDS 6731..7495
/codon_start=1
/product="VP2 protein"
/protein_id="AXF54258.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVSQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRMGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaata gcaacaacga
61 caacgaaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaagca ccacaaaggc ctccacggcc
181 atccacccca gaactggtca aaaagatccc tcctccccca cccaacgggg aggatgagtt
241 agtggtctct tacagcgcca aagatggcgt ttctggtttg cctgaactta ccactgtctg
301 gcaaccggat gagaccaaca cggcattcag tgttcccccc ctcaaccaga gggagaacag
361 ggacgccaag gagccgctga ccggaacaat cctggaaatg tgggacgggg aaatctacca
421 ttacggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagtctcgcc aaggttgaac tagtaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agagaacaac tggcttcttc agaccttacc aagaatggaa
721 taggaagccc ctccccacca tggatgactc taaattgaaa aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatgggag ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatccgctg cttccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aggcaaatga
1201 gctagctatg gtgaggtcca tcgaggatgc ggtactggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga ggacccttga
1321 ccttgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctcttctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaagatc gcagcttcgc tcacagggga
1561 ccagcgcgtg ggcctcatcc ctcgcaatgg cgttgaccac tgggatgcat acaagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctcaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctagccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaaaaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccgcaaggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt tatgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtac ggattgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatc aagagctgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaagag ttgacagagt
2341 tcagaacgcc actgtacaga ctaacaatga gcttgccggc gcactacacc atcttaggtg
2401 cgccagaatc agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggggct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggagg acacagagga aatagctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagtttg ttgtttcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcattt tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccattgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacag aggatcttca ggccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaggg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggtt tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgtgcccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc aggactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcacc ctgctcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccagaat gggaacccac gcaaccatga agatacaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3481 cgtggtcatt ggggtccata cagctgccgc ccgtggagga aacactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 tgcaccaatc ttaggcccag gaagtgcccc aaaactcagc accaagacca agttctggag
3661 gtcatccacg gcaccactcc cacctggtac ctatgaacca gcttacctcg gtggcaagga
3721 ccccagagtt aagggtggcc cttcactgca acaagttatg agggaccaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3841 cgtcaatgtc ctagaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatccctt gacaagacca cttctagcgg tcatccgcac catatgcgga agaacgactg
3961 ctggaacggg gaatccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gagcattcgg aggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacattcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4321 acaaagagcc gtgttggcag cagccttaga gatcatggtc aagttttccc cagagccgca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaactc
4501 catcgcccac tggctcctca ctctctgtgc actctccgag gttacaaacc tgtcccctga
4561 cattattcag gctaactctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgtcctgac aaaactgaag ggcctcttgt catttccgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagctc
4801 aatactcaga caaatgtact ggactagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagca ttctacagca aaatcaataa actggtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgaccccac tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcact ggccagcaaa
5221 atataattga tccctggatt atgaacaatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag gaattcccct ggtgaagtgc tccttaattt ggaattgggc ccagagataa
5341 acccctatct ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaggtgc
5401 aggtagtcct ggctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaatttccc aattgataat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagttggaa ccggtcaacc tcccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tacacacctc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5701 ctagtcctga attttcattt aacttccttg tgccacccac tgtggagtca aagacaaaac
5761 cctttaccct cccaattctg actatctctg aaatgtctaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgccaa aatggacgcg
5881 tcactcttga tggtgagttg atgggcacca ctcagctctt acctagtcaa atctgtgctt
5941 tcaggggcgt gctcactaga tcaacgagca gggctagtga ccaggccgac acagcaaccc
6001 ctagattgtt taattattat tggcatatac aattggataa tctgaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctgg ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccaaagaaac cccgacagta caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gctcattaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccacgagg
6301 cagacttcca gcaatggtcc ttacccgact actctggcca gttcactcac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 taccatcttc tggtgggcga tccaatggga ttctagactg cctggtcccc caagaatggg
6481 ttcagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctttg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaattg ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatat tttaggtttg
6661 aatcttgggt gaacccattt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggag cttttatagc aggattagct ggtgatatat tcacaaatac
6781 tgtagggtct ctagttaatg caggggccaa tgctattaat caaaaagttg attttgaaaa
6841 taataaatat ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacagat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aaacaggggg ttttgaccgc
6961 tggcggcttt tcccccactg atgcagcccg cggggcaatt aatgccccca tgacaaaagt
7021 cctagattgg aatggaacaa ggtactgggc accaagtgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa tgaaccaggc
7141 ccccaaatcc acacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7201 tctgagctca cactcgtccg ggtcgtctcg atccagcggg tctacagttg ctagctcatt
7261 accatcctct aacaggacta gggactgggt cagtcagcaa aatttcaatt tggaaccaca
7321 catgcctggg tcacttagga cggcttttgt cactccacca tctagtacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacag ccgctattcg cacaccttcg tagaatgggg gagtcaaatg tttagtgaaa
7501 aggttatttt aaatttgatt taaattggat ctgatttgga atcttttaaa aaaaaaaaaa
7561 aaaaaaaaaa a
//