Typing tool
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Typing tool
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Complete norovirus genomes
| MG599789 | GI.2 | |
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| GI.P2 |
ORF1: 1..5309
ORF2: 5293..6933
ORF3: 6933..7542
LOCUS MG599789 7542 bp ss-RNA linear VRL 06-FEB-2018
DEFINITION Norovirus GI isolate Env/G1.2/UK/2016 nonstructural polyprotein
gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial
cds.
ACCESSION MG599789
VERSION MG599789.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7542)
AUTHORS Adriaenssens,E.M., Farkas,K., Jones,D., Allison,H.E. and
McCarthy,A.J.
TITLE Viromic analysis of wastewater input to a river catchment reveals a
diverse assemblage of enteric viruses
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7542)
AUTHORS Adriaenssens,E.M., Farkas,K., Jones,D., Allison,H.E. and
McCarthy,A.J.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2017) Department of Functional and Comparative
Genomics, University of Liverpool, Biosciences Building, Crown
Street, Liverpool L69 7ZB, United Kindgom
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.9.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7542
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Env/G1.2/UK/2016"
/isolation_source="sewage"
/db_xref="taxon:122928"
/geo_loc_name="United Kingdom"
/collection_date="10-Oct-2016"
/note="genotype: G1"
CDS <1..5309
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AUN86969.1"
/translation="NTSATSRFLSRFKGLGGGASPPSPIKIKSTEMALGLIGRTTPES
TGTAGPPPKQQRDRPPRTQEEVQYGMGWSDRPIDQNVKSWEELDTTVKEEILDNHKEW
FDAGGLGPCTMPPTYERVRDDSPPGEQVKWSARDGVNIGVERLTTVSGPEWNLCPLPP
IDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAFSVARVTIQPIA
AWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCFEFCCQVMNLEDTWLQRRLVT
SGRFHHPTQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFLGKLKPLNVLNI
LSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGPEDLARDLVPVI
LGGIGLAIGFTRDKVTKIMKSAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQTERTLK
GIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLSAKNADPHVISSTN
ALISRISMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANEIRPGG
KVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAPLTLNCDRIENK
GMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQIRRVSPGDTSAL
KDCFKPDFSHLKMELAPQGGFDNQGNTPFGRGTMKPTTINRLLIQAVALTMERQDEFQ
LQGKMYDFDDDRVSAFTTMARDNGLGILSMAGLGKKLRGVTTMEGLKNALKGYKISAC
TIKWQAKVYSLESDGNSVNIKEERNILTQQQQSVCAASVALTRLRAARAVAYASCIQS
AITSILQIAGSALVVNRAVKRMFGTRTATLSLEGPPREHKCRVHMAKAAGKGPIGHDD
VVEKYGLCETEEDEEVAHTEIPSATMEGKNKGKNKKGRGRKNNYNAFSRRGLNDEEYE
EYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHRVFYKSKSR
KHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNEKISFEAPPTLWSRV
TKFGSGWGFWVSSTVFITTTHVIPTSAKEFFGEPLTSIAIHRAGEFTLFRFSKKIRPD
LTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGA
NAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQASEGETTLEGG
DKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRDPRVTGGPSLQQ
VLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSS
GFPYHRRKNDDWNGTTFIRELGEQAAHANNMYEQAKSMKPMYTAALKDELVKPEKVYQ
KVKKRLLWGADLGTVVRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKY
KYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVGDYVIR
VKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDI
EFDPAKLTQVLREYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRA
SIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQEIK
TGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 5293..6933
/note="ORF2: major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUN86970.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
CDS 6933..>7542
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUN86971.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLIAGGLSSADASRAVAGAPVTQLIDWNG
TRVAAPRSSATTLRSGGFMAVPIPVQPKSKALQSSGFSNPAYDTSTVSSRTSSWVQSQ
NSLRSVSPFHRQALQTVWVTPPGSTSSSSVSSTPYGVFNTDRR"
ORIGIN
1 acaacactag tgctacatct cggtttctat cgagatttaa gggcttagga ggtggcgcaa
61 gcccccctag ccctataaaa atcaaaagta cagagatggc tctggggtta attggcagaa
121 cgaccccaga atcaacgggg accgctggtc caccgcccaa acaacagaga gaccgacctc
181 ctagaactca ggaggaggtc cagtatggta tgggatggtc cgataggccc attgatcaga
241 acgtcaaatc atgggaagag cttgacacca cagttaagga agagatccta gacaaccaca
301 aagaatggtt tgacgccggt ggtttgggcc cttgcacaat gcctccaaca tatgaacggg
361 tcagggatga cagtccacct ggtgaacaag ttaaatggtc cgcacgtgat ggagtcaaca
421 ttggagtgga acgcctcaca acagtgagtg ggcctgagtg gaatctttgc cccttacccc
481 ccattgattt gaggaacatg gaaccagcta gtgaacccac tattggagat atgatagaat
541 tctacgaagg ccacatctat cattactcca tatacattgg gcaaggcaaa acagtcggcg
601 tccattctcc acaggcggca ttttcagtgg ctagagtgac catccaaccc atagccgctt
661 ggtggagagt ttgttacata ccccaaccca agcatagact gagttacgac caactcaagg
721 aactagagaa tgagccatgg ccatacgcgg ccataaccaa taattgtttt gaattctgtt
781 gtcaagtcat gaaccttgag gacacgtggt tgcaaaggcg actggtcacg tcgggcagat
841 tccaccaccc cacccagtcg tggtcacagc agacccctga gttccagcaa gatagcaagt
901 tagagttggt tagggacgcc atattggctg cagttaatgg tcttgtttcg cagcccttta
961 agaatttctt gggtaaactt aaacccctca atgtgcttaa catcctgtct aactgtgatt
1021 ggaccttcat gggggtggtg gaaatggtca tactattact tgaactcttt ggtgtgttct
1081 ggaacccgcc tgatgtatcc aattttatag cgtcccttct tcctgatttc catcttcagg
1141 gacctgaaga cttggcacga gatctagtcc cggtgattct tggtggtata ggattagcta
1201 ttgggttcac cagagacaaa gttacaaaga tcatgaagag tgctgtggat ggtcttcgag
1261 ctgccacaca actgggacag tatggattag aaatattctc actgctcaag aagtacttct
1321 ttggggggga ccagactgag cgcaccctga aaggcattga ggcagcagtc atagatatgg
1381 aggtactgtc ctccacttca gtgacacagc tagtgaggga caaacaggca gcaaaggcct
1441 atatgaacat cttggacaat gaagaagaga aggccaggaa gctctctgct aaaaacgctg
1501 acccacatgt gatatcctca acaaatgccc taatatcgcg catatccatg gcacgatctg
1561 cattggccaa ggcccaggct gagatgacca gtcgaatgcg accagttgtc attatgatgt
1621 gtggcccacc tgggattggg aagaccaagg ctgccgagca cctagctaag cgtctagcca
1681 atgagatcag accaggtggt aaggtggggt tggttccccg tgaagctgtc gaccactggg
1741 acgggtatca tggtgaggaa gtgatgctgt gggatgacta tggcatgaca aaaatacaag
1801 acgactgtaa taaactccag gccattgctg attcggcccc cctcacatta aattgtgata
1861 ggattgaaaa taaaggaatg cagttcgttt cagatgcaat agtcatcacc accaacgccc
1921 caggccccgc ccctgtggac tttgtcaacc ttggaccagt gtgtagacgg gtcgactttt
1981 tggtgtactg ctctgcccca gaggtggagc agatacggag agtcagccct ggcgacacat
2041 cagcactgaa agactgcttt aagccagatt tctcacattt aaaaatggag ctggctccac
2101 aaggtgggtt tgataatcaa gggaacacac cgtttggaag aggcaccatg aagccaacaa
2161 ccattaatag actcctcata caagccgtgg cccttaccat ggaaaggcag gatgagttcc
2221 agttgcaggg aaaaatgtat gattttgatg atgacagagt gtcagcgttc accaccatgg
2281 cacgtgacaa tggcctgggc atcttgagca tggcgggtct gggtaagaag ttacgcggtg
2341 tcacaacgat ggagggcttg aagaatgccc tgaagggata caaaattagt gcgtgcacaa
2401 taaaatggca ggctaaagtg tactcactag aatcagatgg caacagtgtc aacattaaag
2461 aggagaggaa catcttaact caacaacaac agtcagtgtg tgctgcctct gtcgcgctca
2521 ctcgcctccg ggctgcgcgt gcggtggcat acgcgtcatg catccaatcg gctataactt
2581 ctatactaca aattgctggc tcagccctag tggtcaacag agcagtgaag agaatgtttg
2641 gcacgcgcac tgccaccctg tcccttgagg gcccccccag agaacacaaa tgcagggtcc
2701 acatggccaa ggccgcagga aaggggccta ttggccatga tgatgtggta gaaaagtatg
2761 ggctttgtga aactgaggag gatgaagaag tggcccacac tgaaatccct tctgccacca
2821 tggagggcaa gaataaaggg aagaacaaga aaggacgtgg tcggaagaac aactacaacg
2881 ccttctcccg caggggactc aatgatgaag agtacgaaga gtacaagaag atacgcgagg
2941 agaaaggtgg caattatagc atacaggagt acctagagga taggcaaagg tatgaagaag
3001 aactagcaga ggttcaagca ggtggagatg gaggaatcgg ggaaactgaa atggaaatcc
3061 gccacagagt gttctacaaa tctaagagta gaaagcatca ccaggaagag cgacgccagc
3121 tagggctggt gacaggttcc gacattcgga agagaaaacc aatcgactgg accccaccca
3181 agtcagcatg ggcagatgat gagcgtgagg tggattacaa tgagaagatc agttttgagg
3241 cgccccccac tttatggagc agagtgacaa agtttgggtc tggatggggt ttctgggtca
3301 gctctacagt cttcataacc acaacgcacg tcataccaac cagtgcgaag gaattctttg
3361 gtgaacccct aaccagcata gccatccaca gggctggtga gttcacccta ttcaggttct
3421 caaagaaaat taggcctgac ctcacaggta tgatccttga ggagggttgc cccgaaggca
3481 cagtgtgttc agtactaata aaaagagact ctggtgaact actgccattg gctgtaagaa
3541 tgggcgcaat agcatcaatg cgcatacagg gccgccttgt ccatgggcag tccggcatgt
3601 tgctcaccgg ggctaatgct aagggcatgg accttgggac catcccagga gactgtgggg
3661 ctccttatgt ctataagaga gccaacgact gggtggtctg tggtgtacac gctgctgcca
3721 ccaaatcagg caacaccgtt gtgtgcgccg ttcaggccag tgaaggagaa accacgcttg
3781 aaggcggcga caaaggtcac tatgctggac atgaaataat taagcatggt tgtggaccag
3841 ccttgtcaac caaaaccaaa ttctggaaat catcccccga accactaccc cctggggtct
3901 atgaacccgc ctacctcggg ggccgggacc ctagggtaac tggcggtccc tcactccaac
3961 aggtgttgcg ggaccaatta aagccatttg ctgagccacg aggacgcatg ccagagccag
4021 gtctcttgga ggccgcagtt gagactgtga cttcatcatt agagcaggtt atggacactc
4081 ccgttccttg gagctacagt gatgcgtgcc agtcccttga taagaccact agttctggtt
4141 ttccctacca cagaaggaag aatgacgact ggaatggcac cacctttatc agggagttag
4201 gggagcaggc agcacacgct aataacatgt atgaacaggc taaaagtatg aaacccatgt
4261 acacggcagc gcttaaagat gaactagtca aaccagagaa ggtataccaa aaagtgaaga
4321 agcgcttgtt gtggggggca gacttgggca cggtggttcg ggccgcgcgg gcctttggtc
4381 cattctgtga tgctataaaa tcccacacaa tcaaattgcc cattaaagtt ggaatgaatt
4441 caattgagga tgggccactg atctatgcag aacattcaaa gtataagtac cattttgatg
4501 cagattacac agcctgggat tcaactcaaa atagacaaat catgacagag tcattctcaa
4561 tcatgtgtcg gctaactgca tcacctgaac tagcttcagt ggtggctcaa gatttgcttg
4621 caccctcaga gatggatgtt ggcgactatg tcataagagt gaaggaaggc ctcccatctg
4681 gttttccatg tacatcacag gtcaatagta taaaccattg gttaataact ctgtgtgccc
4741 tttctgaagt aactggtctg tcgccagatg tcatccagtc catgtcatac ttctctttct
4801 atggtgatga tgaaatagtg tcaactgaca tagaatttga tccagcaaaa ctgacacaag
4861 tcctcaggga gtatggactt aaacctaccc gccccgacaa aagcgagggc ccaataattg
4921 tgaggaagag tgtggatggt ttggtctttt tgcgtcgcac tatctcccgc gacgccgcag
4981 gattccaggg gcgactggac cgggcatcca ttgaaagaca aatctactgg actagaggac
5041 ccaaccattc agaccctttt gagaccctgg tgccacacca acagaggaag gtccaactaa
5101 tatcattatt gggtgaggcc tcactgcatg gtgaaaagtt ttacaggaag atttcaagta
5161 aagtcatcca ggaaattaaa acagggggcc ttgaaatgta tgtgccagga tggcaagcca
5221 tgttccgttg gatgcggttc catgaccttg gtttgtggac aggagatcgc aatctcctgc
5281 ccgaatttgt aaatgatgat ggcgtctaag gacgcccctc aaagcgctga tggcgcaagc
5341 ggcgcaggtc aactggtgcc ggaggttaat acagctgacc ccttacccat ggaacctgtg
5401 gctgggccaa caacagccgt agccactgct gggcaagtta atatgattga tccctggatt
5461 gttaataatt ttgtccagtc acctcaaggt gagttcacaa tctctcctaa caacaccccc
5521 ggtgatattt tgtttgattt acaactaggt ccacatctaa accctttctt gtcacatttg
5581 tctcaaatgt ataatggctg ggttgggaac atgagggtca gaatcctcct tgctgggaat
5641 gcattctcag ctgggaagat tatagtttgt tgtgtccccc ctggctttac atcttcttct
5701 ctcaccatag ctcaggctac attgtttccc catgtaatag ctgatgtgag aacccttgag
5761 ccaatagaaa tgcccctcga ggatgtacgc aacgtcctct atcacaccaa tgacaatcaa
5821 ccaacaatgc ggctggtgtg tatgctatac acgccgctcc gcactggtgg ggggtctggt
5881 agttctgatt cctttgtagt tgctggcagg gttctcacag cccctagtag cgacttcagt
5941 ttcttgttcc ttgtcccgcc taccatagaa cagaagactc gggctttcac tgtgcctaat
6001 atccccttgc aaaccttgtc caattctagg tttccttccc tcatccaggg gatgattctg
6061 tcccccgatg catcccaagt ggttcaattc caaaatgggc gttgccttat agatggtcaa
6121 ctcttaggca ctacacccgc tacatcagga cagctattca gagtaagagg aaagataaat
6181 cagggagccc gcacacttaa cctcacagag gtggatggta aaccattcat ggcatttgat
6241 tcccctgcac ctgtggggtt ccccgatttt ggaaaatgtg attggcacat gagaatcagc
6301 aaaaccccaa acaacacaag ttcaggtgac cccatgcgca gtgtcagcgt gcaaaccaat
6361 gtgcagggtt ttgtgccaca tctgggaagt atacaatttg atgaagtgtt caatcatccc
6421 acaggtgact acattggcac cattgaatgg atttcccagc catccacacc ccctggaaca
6481 gatatcaatc tgtgggagat ccccgattat ggatcatccc tttcccaagc agctaatctg
6541 gcccccccag tattcccccc tggatttggt gaggcccttg tatactttgt ttctgctttc
6601 ccgggcccta ataaccgctc agccccgaat gatgtaccct gtcttctccc tcaagagtac
6661 ataacccact ttgtcagtga acaagcccca acgatgggtg acgcagcttt actgcattat
6721 gtcgaccctg ataccaacag gaaccttggg gagttcaagc tataccctgg gggttacctc
6781 acctgtgtac caaacggggt aggtgccggg cctcaacagc tccccctcaa tggtgttttt
6841 ctctttgttt cttgggtgtc tcgtttttac cagcttaagc ctgtgggaac agccagtacg
6901 gcaagaggta ggcttggagt acgccgtata taatggccca agccatcata ggagcaatag
6961 ccgcgtcagc tgcaggctca gcattgggtg cgggcatcca ggctggtgcc gaggctgcgc
7021 ttcagagtca aagataccaa caagacttag ccctgcaaag gaatactttc gaacatgata
7081 aggatatgct ttcctaccag gtccaggcaa gtaatgcact tttagcaaag aatctcaata
7141 cccgctattc tatgcttatt gcagggggtc tttctagtgc tgatgcttct cgggctgttg
7201 ctggggcccc tgtaacacaa ttgattgatt ggaacggcac tcgggttgcc gcccccaggt
7261 caagtgcaac aactctgagg tctggtggtt tcatggcagt ccccatacct gttcaaccca
7321 aatctaaggc cttgcaatcc tctggatttt ctaatcctgc ttatgacacg tccacagttt
7381 cttctaggac ttcttcttgg gtgcagtcac agaattccct gcgaagtgtg tcaccctttc
7441 ataggcaggc ccttcaaact gtatgggtca ctccacctgg gtctacttcc tcttcttctg
7501 tttcctcaac accttatggt gtttttaata cggacagacg ga
//