Typing tool

Complete norovirus genomes

MG572716  GII.12
 GII.P1

Length: 7,900 | 3 CDS

ORF1: 1..5284
ORF2: 5268..6935
ORF3: 6935..7732
LOCUS       MG572716                7900 bp    RNA     linear   VRL 13-APR-2018
DEFINITION  California sea lion norovirus strain Csl/NoV2/PF090207 ORF1
            polyprotein gene, partial cds; and VP1 capsid protein and VP2 minor
            structural protein genes, complete cds.
ACCESSION   MG572716
VERSION     MG572716.1
KEYWORDS    .
SOURCE      California sea lion norovirus
  ORGANISM  California sea lion norovirus
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7900)
  AUTHORS   Woo,P.C.Y., Teng,J.L.L., Chan,W.M., Lau,S.K.P. and Yuen,K.Y.
  TITLE     Two novel noroviruses and a novel norovirus genogroup in California
            sea lions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7900)
  AUTHORS   Woo,P.C.Y., Teng,J.L.L., Chan,W.M., Lau,S.K.P. and Yuen,K.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2017) Microbiology, The University of Hong Kong,
            Pok Fu Lam Road, Queen Mary Hospital, Hong Kong, Hong Kong
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7900
                     /organism="California sea lion norovirus"
                     /mol_type="genomic RNA"
                     /strain="Csl/NoV2/PF090207"
                     /isolate="PF090207"
                     /host="Zalophus californianus (California sea lion)"
                     /db_xref="taxon:2070151"
                     /geo_loc_name="Hong Kong"
                     /collection_date="Feb-2009"
     CDS             <1..5284
                     /codon_start=2
                     /product="ORF1 polyprotein"
                     /protein_id="AUO60023.1"
                     /translation="DVSAAASSAKNTTNNNKTNTTAEVYKDSAGNPQEGFFANMKVGV
                     KKALGARPKERPKPQESKPPDQDPVQQQDATPSIRDAVKELCSVISGKNQPEIDQAPN
                     TDSAQDVKPPSEEEKARVNMEVDEFGKVKYVRDQDQIIGLPNLHTVEIPKERSPKCVP
                     PPADREVKVPKEPPAGAILEMYDGDFYHYAIYLERGLILGINRPGWALSTAIVNIEPI
                     GLWWRVVYVPPFQVSLPALYHLNGEKFPYNAFDNNCYNFCCQVLELDDSWLNRKHVQR
                     TSGFFDPYQPWNKKPSVHIPDTKLEKVADMFLTALGALFSRPIKNIIGRLKPLNVLNL
                     LTSCDWSFASIVETIILLAELFGIYWEPPDVTAFIMPLLEDFELQGPEDLAAELVPVI
                     LGGIGMAIGFTAEKAGKLLSSAASTLRATKEIGNYGLEIFKLIMKWFFPKKGDEEAMN
                     NLVRGIEEAVLDLEALENNHMTKLLKSKDLMSAYIKTLDAEEEKARKLSTKASSPDIV
                     ATVNALLARISAARSLIHKAKEEMCSRVRPVVVMVSGRPGIGKTHYARHLAERVASTL
                     GNDKRVGLIPRNGVDHWDAYRGEQVVLWDDYGMGNIIKDALTLQELADTCPVTLNCDR
                     IENKGKMFDSDVIIITTNSPNPSPMDYVNMEAVARRVDFLVYADAPDIEKAKKECPGD
                     PKAWKPHFKDDHSHLKLTLAPQGGFDKAGNTPHGKGVVKQVTPSGLVARVAALVAERR
                     DDFQLEGGEPKVYNFDASQVSAFRRLAADNKYGLVETMRVGNKLRGVTNMDQFRAAIR
                     DVKFSRCRIIYKGITYDLESDGKGKVTIDRVQDQMVQQVNEVHQAVLRIRQARLRYYV
                     QVAQEVIYSLLQTAGAAFVVHRIMKRNGDPWSSWKAEIKAAQPEPDESNRVPPKTPCS
                     QCEKPFGQCTCRWVVEPEDFEDEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEYKKIRE
                     ERGGKYSIQEYLEDRDRYQEEVALIQASGGDCDDVTLGRIRNEIFRPSKKQRKEERSK
                     LGLVTGREIRQRKPDDFKPKGKLWADDERETDYNEKIQFEAPASVWSRIVQFGTGWAF
                     WVSPSLLITSTHVIPKGVEEMFGVPINQIQVHKCGEFCRLRFPKAIRTDVSGMILEDG
                     APEGTVCSILVKRPTGECLPLAVRMGTPATMKIQGKVVAGQLGMLLTGSNAKNMDLGT
                     TPGDCGCPYVYKRGNDYVVVGVHTAAGRGGNTVICAVQTSEGEAVLEGGVDNGTYCGA
                     PIITKGNAPNLSTKTKFWRSSVEPLPPGTYEPAYLGGRDPRVESGPSLQQVMREQIKP
                     FTAPRGRPIKPHLLKAAVETISNVLEQTLDPPVPWTFAQACQSLDKTTSSGWPHHVAK
                     NKHWNGESFTGPLADQASKANLMYEQGKSMVPRYTAALKDELVKPSKIYANIKKRLLW
                     GADLATMIRCARAFGPVTDALKKCCLTLPVKVGLNINEEGPIIFEKHAQYKNHYDADY
                     SRWDSTQQREVIKAALEIMVKFTAEPQLAAVVAADLVAPSMLDTGDFVIQINEGLPSG
                     VPCTSQVNSIAHWIYTLTAMAEAADVDPDVIQANSYFSFYGDDEIVSTDLDFDPEVLT
                     LKLRAVGLVPTRPDKTEGPLTVSNKLSGLTFLRRHIVQDNIGYYGRLDKDSITRQLYW
                     TRGPNHQDPSETMHPHANRAIQLMSLLGEAALHGQAFYQKISRIVIKEIKEGGLEFYV
                     PKFEAMFRWMRFSDLSTWEGDRNLAPEYVNEDDV"
     CDS             5268..6935
                     /codon_start=1
                     /product="VP1 capsid protein"
                     /protein_id="AUO60024.1"
                     /translation="MKMTSKDVAPSTDGAANLVPVDQNEVMAIEPVAGAQLAAPVAGQ
                     FNAIDPWIRLNFVQAPNGEFSVSPRNSTGEILLDLELGPELNPFLAHLARMYNAYAGG
                     MEVQVILAGNAFAAGKIIFAAIPPGFPAGAISASQATNFPHVIVDVRQLEPVNLPLPD
                     VRNRLFHFNNEAPEPRMRLVAILYTPLRVGNTGDDVFTVSCRVLTRPSQDFEFMFLVP
                     PTVEQKTTPFSLPDLEVGQMTNSRFPLRIDVMAASPNAQTVIQFQNGRCTIDGTLLGT
                     TLANGAAVCEFNGAYIGSNARAAGEDATDEPDTVEPRSGWSNAFFSLAELDGQAFEPG
                     VGQLAPLGTPDFVATIKGTISRLTPNREQVIAEQNTEEAANAPGLGTARVQYQTNSIT
                     LANNQVVTFRPYGLHGAGRYNQFVLPPYSPGNPSGLAPAVAPDFPSEKVLFFRSDMPC
                     SNHTPSNNWYIDCLLPNEYVSHFYSLAAPRRGDLALVRYINPESNRVLFEAKLHPEGF
                     FTISGANEGPLVFPTNGYFRFDSWVSRFYTLSPVGSGSGRSGRTKAH"
     CDS             6935..7732
                     /codon_start=1
                     /product="VP2 minor structural protein"
                     /protein_id="AUO60025.1"
                     /translation="MAGQVLAGIGADVLGSGLGALIGAGANAINQRVEFGYNQALQQN
                     SFRHDKEMLQAQVQATKQLQAEMIGIKQGVLSAAGFSDSDAARGAVNAPMTKAIDWNG
                     TRYYAPNSMGATSYSGQFTHQVTARQRVQVPERSAPPIQAPQPTPNAPRPQSSAAMSL
                     SSGSWGQPAASRSTESTRLSSTSSSASRVEQWVDEQRSLARDPFMRGALQTAFVTPPS
                     SRASSASSSAGTVSTVPKEVLDSWTPVFNTRRLPVFTHLRRRGESSV"
ORIGIN      
        1 cgacgtctct gctgctgcta gcagtgccaa aaacactact aacaacaaca aaaccaacac
       61 cactgcagag gtctataaag actctgcagg gaacccccaa gaagggttct tcgccaacat
      121 gaaagttggt gtaaagaagg ctcttggggc tcggccaaaa gaacggccta agccccagga
      181 gtcaaaaccc ccggaccagg atcccgtaca acagcaagat gccaccccgt ccatacggga
      241 tgccgtcaaa gaactctgtt cagtcatatc tggaaagaac caaccggaga tcgaccaggc
      301 acccaacact gattctgccc aggacgtgaa gccacccagt gaagaggaga aagctcgtgt
      361 caacatggaa gtagacgaat ttggcaaagt caagtacgtt cgtgaccagg atcagataat
      421 tggattgccc aatctccaca ctgttgagat ccccaaggaa cgcagcccta agtgcgtccc
      481 gccaccggca gaccgagagg ttaaggttcc caaggagccc cccgccggag ctatccttga
      541 gatgtatgat ggtgatttct accactacgc catctatctc gagaggggcc tcattttggg
      601 tatcaaccgc ccggggtggg ctctgtccac tgccattgtg aacatcgagc ccattggcct
      661 ttggtggcgt gttgtttatg taccaccctt ccaagtctcc ctccccgctc tttaccacct
      721 caatggggag aagtttcctt ataatgcttt tgacaacaac tgctacaatt tctgttgcca
      781 ggtccttgag cttgacgaca gttggctcaa ccgcaagcat gtccagcgca cctcgggttt
      841 ctttgaccct taccaaccct ggaacaagaa gccctcagtg cacatccctg acactaagct
      901 tgaaaaggtg gccgacatgt ttctgacagc cctcggtgcc ctcttctctc gcccaatcaa
      961 gaacattatt gggcgcctta agccacttaa tgtgctcaac ctcttgacat catgtgactg
     1021 gtcttttgcc agcatagttg agacaatcat cctcctcgcc gagctcttcg gcatttactg
     1081 ggaaccacca gatgtgacag ccttcatcat gccgttgctt gaggactttg aactccaggg
     1141 gcctgaggac cttgcggccg agctggtccc cgtcattctt gggggcatcg gcatggcgat
     1201 tggcttcaca gccgaaaagg caggtaaact cctcagctca gccgcctcaa cgctcagggc
     1261 gactaaagag attggtaact atggattgga gatattcaaa ctgatcatga agtggttctt
     1321 ccccaagaag ggcgacgagg aggccatgaa caatctagtt cgtgggatcg aggaggcggt
     1381 gctcgatctc gaggccctag aaaacaacca catgaccaaa ctcctcaaga gcaaagacct
     1441 catgtcagcg tacatcaaga ccctcgacgc tgaagaggaa aaggcccgca agctctccac
     1501 caaagcctcc tcacctgaca tcgtggccac agttaacgcc ttgttggcca ggatttctgc
     1561 cgctcgctcc ctcatccaca aggctaaaga ggagatgtgt tcccgtgtca gacctgttgt
     1621 ggtcatggtg tctggtaggc ccggcatagg taaaacccac tacgcgagac atcttgcaga
     1681 gcgggtggcc tccacgctcg gaaatgacaa acgagtgggc ctcatccccc gcaatggcgt
     1741 tgaccactgg gatgcctacc ggggagagca agtcgtcctc tgggatgatt atggcatggg
     1801 taacatcatc aaggacgctc tcacactcca ggagctggct gacacctgcc ccgtgaccct
     1861 caactgtgac cgcattgaga ataagggtaa gatgttcgat tctgatgtca ttataataac
     1921 aaccaactca cctaacccca gccccatgga ttatgtcaac atggaggcag tagctcgtcg
     1981 cgttgacttc ctggtctacg ctgacgctcc tgacatcgag aaggccaaga aggagtgccc
     2041 tggtgacccc aaggcatgga aaccacactt taaggatgac cactcacacc taaaactcac
     2101 cctcgccccc caaggagggt ttgacaaggc tggaaacaca ccccatggca aaggtgttgt
     2161 caaacaagtc acaccaagtg gtctggtcgc ccgagtggct gcactcgtgg ctgaacgccg
     2221 cgatgacttc cagctggagg gtggtgagcc taaggtttac aactttgatg cctcccaggt
     2281 ttcagccttc cgacgcctgg ctgctgacaa caagtacggc ttggttgaga caatgagagt
     2341 tgggaataag ttgcgggggg tcaccaacat ggatcagttc agggcagcca tccgcgatgt
     2401 taagttcagc cgatgccgca tcatctacaa gggcatcacc tatgatcttg agtcagatgg
     2461 caagggaaaa gttacgattg atcgtgtcca agatcagatg gtgcaacagg tcaacgaggt
     2521 gcaccaggca gtcctgcgga tcagacaggc aaggctccgc tactacgttc aagtagccca
     2581 agaagtgatc tacagtcttc tgcagactgc cggagccgcc tttgttgtcc acaggattat
     2641 gaaaaggaat ggggacccct ggtcctcctg gaaggctgaa atcaaggcag cccaacctga
     2701 gcctgatgag tctaaccgag tcccccccaa aaccccctgc tcccagtgtg agaaaccatt
     2761 tggacagtgc acatgccgct gggttgtcga gcctgaagac tttgaggatg aaggcaagaa
     2821 aggaaagaac aagaaggggc gcggccggaa gcacaccgcc ttctccagta agggtctgag
     2881 tgatgaagag tacgatgagt acaagaaaat ccgcgaggag cgcggtggca agtactcaat
     2941 ccaagagtac cttgaagacc gagataggta ccaagaggaa gtggcactca ttcaggcatc
     3001 tggtggtgat tgcgatgatg taaccttggg tcgcattcgc aacgagatct tccgccccag
     3061 caagaaacag cgcaaagagg agcgcagtaa gcttggcctt gtcaccggtc gcgaaatccg
     3121 tcagaggaag cccgacgatt tcaaaccgaa gggcaagcta tgggccgatg acgaacggga
     3181 gaccgactac aacgagaaga tccaattcga agcgcccgct tctgtctggt cccgcatcgt
     3241 ccaattcggc accggctggg cgttttgggt gtcgcctagc ctgcttatca catcaactca
     3301 tgtcataccc aagggagtgg aggagatgtt tggcgtccca attaatcaga tccaagtgca
     3361 taagtgtggt gagttctgcc gtctgagatt cccgaaggct atcagaactg acgtctctgg
     3421 gatgatcttg gaagatggcg ctcctgaagg gacggtctgt agcatcttgg ttaagcgccc
     3481 aactggtgaa tgcctcccac ttgccgtccg gatgggaaca cccgccacca tgaaaatcca
     3541 aggcaaggtt gtagcgggcc aacttggcat gctgctcact gggtctaacg ctaagaacat
     3601 ggaccttggc accactcccg gcgactgtgg ttgtccctac gtctacaagc gtgggaatga
     3661 ctacgtggtc gttggcgtcc acaccgcggc tggccgtggg ggcaacactg tcatctgtgc
     3721 cgtccagact agcgaaggtg aggctgtact tgaaggaggt gttgacaacg gcacttattg
     3781 tggcgcccca atcataacaa aagggaacgc ccccaacctg tccaccaaga caaaattctg
     3841 gaggtcctca gtggagcccc tcccacctgg cacttatgag cccgcctatt tgggtggtcg
     3901 cgacccccga gtagagtcag ggccttcgct gcagcaggtg atgagggagc aaattaagcc
     3961 tttcacggcc cctcgtggga ggcccattaa accacatctc cttaaggctg cagtggaaac
     4021 catcagcaac gtgcttgagc aaacattgga cccgccagtc ccctggacct ttgctcaagc
     4081 atgccagtcc ctggataaga ccacttcaag cggctggcct caccacgtgg ccaagaacaa
     4141 acactggaat ggggagtcct tcaccggtcc ccttgctgac caggcctcca aagctaacct
     4201 gatgtatgaa caaggcaaga gtatggttcc aagatacact gctgctctca aggacgaact
     4261 cgtcaagccc tccaaaatct atgctaacat caagaagagg ctactctggg gtgccgacct
     4321 cgcaaccatg attcgttgcg cgcgtgcctt cgggccggtt acagacgcat tgaagaagtg
     4381 ctgtctcacg ctcccagtga aagttgggtt gaacatcaat gaggagggcc ccattatctt
     4441 tgaaaagcat gcccaataca agaaccatta tgacgctgac tactccaggt gggattcaac
     4501 acaacagcgg gaagtcatta aggcggcact tgaaatcatg gtgaaattca cagcggaacc
     4561 acaattggct gcggtggtgg ctgctgatct ggttgcacca agcatgctag acactgggga
     4621 tttcgtcatc caaattaatg aaggcttgcc ttcgggggtg ccctgcacat ctcaggtcaa
     4681 cagtattgcc cattggattt atacactcac cgccatggca gaagccgccg atgtggaccc
     4741 tgatgtcatc caggctaata gttacttctc cttctatggt gatgatgaga ttgtttccac
     4801 cgatttggac tttgaccccg aggtgcttac cctgaagctt cgcgcagtag ggctggtgcc
     4861 gacgagaccc gataaaactg aaggaccgct gaccgtttcc aataagttga gtgggctcac
     4921 ctttctgagg aggcacattg tgcaggacaa cattggctat tatggccgcc tagacaagga
     4981 ttcaattact agacaactct attggacccg aggccccaat catcaggatc cctctgaaac
     5041 gatgcaccca catgcaaata gagcaattca gttgatgtcc ctcctaggag aagccgcctt
     5101 gcacggccag gccttctacc agaaaatcag cagaatagtc atcaaagaga tcaaagaagg
     5161 tggcttggag ttttacgtgc ccaagtttga agccatgttc cgctggatgc ggttttctga
     5221 cctcagcacg tgggagggtg atcgcaatct cgctcccgag tacgtgaatg aagatgacgt
     5281 ctaaggacgt cgctccatct acggatggcg ctgccaacct cgtcccagtg gatcaaaatg
     5341 aggttatggc tattgaacca gttgccggcg ctcaattggc tgcccccgtc gccggtcaat
     5401 ttaatgcaat agatccctgg attagattaa attttgttca agcccccaac ggagagttct
     5461 ccgtttcacc ccgtaattca accggggaga tccttcttga tttggaatta ggacctgaat
     5521 tgaatccctt tcttgcccat ctagctagaa tgtataatgc ttatgccggt ggcatggagg
     5581 ttcaggtgat ccttgcgggg aatgcgttcg ccgcaggtaa aatcatcttt gccgcaatac
     5641 cacctggctt cccagctggt gccatttctg cttctcaggc aacaaatttt ccccatgtga
     5701 ttgttgatgt ccgtcagctt gagccagtca atctgcccct cccagatgtt cgcaatcgtc
     5761 tttttcattt caataatgaa gcccctgagc ccaggatgag acttgtggcc atcctctata
     5821 cgcctctccg cgtggggaat actggtgatg atgtctttac tgtctcctgt cgcgtgctga
     5881 cacgcccttc tcaagatttt gaattcatgt ttctagtccc tcccactgtt gagcaaaaga
     5941 ccacaccttt ctctttgcct gatctcgagg tggggcagat gaccaactct cggtttccgc
     6001 tccgcatcga tgtgatggct gcgtccccca atgctcagac agtcatacaa ttccaaaatg
     6061 gccggtgcac gatcgatggc accctccttg gcaccaccct tgccaacggt gcggcggtgt
     6121 gtgaattcaa tggggcctac ataggttcca acgcacgcgc tgccggggag gacgccactg
     6181 atgagccgga cacagttgag cctagaagtg gatggtctaa tgctttcttt tctcttgctg
     6241 agcttgatgg ccaggctttt gaaccaggtg tgggtcaact cgccccactg ggcacccctg
     6301 attttgtggc aaccatcaaa gggacaatat cccgcctgac accaaatagg gaacaggtca
     6361 tcgcagagca aaacaccgag gaggccgcta acgcccccgg gttgggcact gcaagggtcc
     6421 agtaccagac caactccatc acactggcca ataatcaggt ggtgaccttc aggccctatg
     6481 gcctgcatgg tgctggccgc tacaaccagt ttgtcctacc cccttactct ccaggcaacc
     6541 catctggtct tgcacccgcc gtggctcctg actttccttc agagaaagtt cttttctttc
     6601 gcagtgatat gccttgttcc aatcatactc cctctaataa ttggtatatt gattgcttgc
     6661 ttccgaatga atatgtttct catttctatt cccttgccgc gccccggcgt ggtgaccttg
     6721 ccctggtgcg ctacatcaac ccagaatcca acagggtcct cttcgaggcc aagctgcacc
     6781 ctgaaggctt cttcaccatc tctggtgcaa atgagggccc cttagtcttt ccaacaaatg
     6841 gctacttccg gtttgattcc tgggtttcca gattctacac tctcagccct gtgggaagcg
     6901 gctctggccg aagtgggcgc accaaggctc actaatggcg ggacaggtcc tcgcaggtat
     6961 tggagccgac gtgctcggtt ccggtcttgg cgccttgatt ggcgcagggg ccaatgcaat
     7021 aaatcagaga gtggaatttg gctacaacca agccctgcag caaaactcct ttcgccatga
     7081 caaggagatg ctccaggccc aggtgcaggc cacaaagcag cttcaagccg agatgatcgg
     7141 catcaaacag ggtgtcctca gcgctgcggg attttcggat tccgatgccg ccagaggagc
     7201 agtcaatgcc cccatgacaa aggccattga ctggaacggc accaggtatt atgcccccaa
     7261 ctccatgggg gccacatctt actctggcca gttcacacac caagtgaccg caaggcaaag
     7321 ggtgcaagtc ccagagcgct cggcgccacc gattcaggct ccccagccta cgccgaacgc
     7381 gccgagacct cagtcgagtg cggcaatgtc cctttcctca gggagttggg gccagccagc
     7441 cgcctcaaga agcacggagt caacccgtct ctcttccaca agctcctcag catcaagagt
     7501 tgagcagtgg gtagatgagc agcgctctct cgcgcgcgac cccttcatga ggggtgcact
     7561 ccagactgct tttgtgacgc caccaagcag tcgtgcttcc agcgcttcct ctagcgcggg
     7621 caccgtctct acggtcccaa aggaggttct tgactcttgg acgcctgtct ttaacacgcg
     7681 tcgacttcct gtctttactc accttcgcag gaggggtgag tcctctgtat gagccgcggc
     7741 cacgccgagt aggatcgagg gtacagctca ttttccttct tttataggtt tttaggtttt
     7801 taggtttatc actaatgata agttttcctt gattcttgta attctgtgaa atgtaattgt
     7861 tttctttgat cactgaattc aatttggcat ttaaaaaaaa
//