Typing tool
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Typing tool
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Complete norovirus genomes
| MG572182 | GII.1 | |
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| GII.P16 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS MG572182 7518 bp ss-RNA linear VRL 18-JAN-2018
DEFINITION Norovirus GII isolate SDJN170450, complete genome.
ACCESSION MG572182
VERSION MG572182.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7518)
AUTHORS Ao,Y.
TITLE Complete genome sequence of a novel recombinant GII.P16-GII.1
norovirus associated with an outbreak in Shandong province, China
in 2017
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7518)
AUTHORS Ao,Y.
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2017) Viral Diarrhea, Institute for Viral Disease
Control and Prevention of China CDC, No. 100 Ying-Xin Street
Xuan-Wu District, Beijing 100052, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7518
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDJN170450"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Jinan City, Shandong Province"
/collection_date="08-Mar-2017"
/collected_by="Yuanyun Ao"
/note="genotype: GII.P16-GII.1"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUF81839.1"
/translation="MKMASNDATVAVVCNNNSDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTFDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEG
APKSEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVVPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPGVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETTIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5085..6692
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUF81840.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPAPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICAMRGRINAQVPDDHHQWNLQVTNTNGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGAWEDRDFDLNQPTRFTPVGLYDT
EHFDQWVLPNYSGRLTLNMNLAPSVSPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6692..7471
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUF81841.1"
/translation="MAGAFIAGLAGDIVTNGIGTLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQILATKQLQADMIALRQGVLTAGGFSPTDAARGAVGAPMTQVLDWNG
TRHWAPGATKTTSFSGGFTSSSHARTLDLPKKTTAAPTPMPVSRPSSFASTVPTRSTV
IGGSSNPPSSIRSSSSVSSQSTPSSSRVSEWVQNQNRALEPYMRGALQTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQA"
3'UTR 7472..7518
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gtttgcaaca acaacagcga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggct aggcccaaac agcctgcccc gagagacaaa ccacaaaagc ccccaagacc
181 accaactccc gagttggtca agaggatacc ccctcctcca cctaatggcg aagaagaaga
241 agaaccagtc attaggtatg aggttaagag tgggatctct ggcctgcccg agctcacaac
301 agtcccccaa ccggacgtgg ccaacacagc attcagtgtt ccaccactga gcttgagaga
361 aaacagggag gccaaggaac cgctaacagg ggcaatatta gagatgtggg atggagagat
421 ataccactat ggcctgtacg tggagaaagg tttggtgttg ggtgtgcaca aaccacctgc
481 agccataagc atggcgagag tggaactgac gccgctgtca ttgtactggc gtgtggtgta
541 cactccccaa tacctcatct cccctgaaac tctcaggagg ctcaacggag aggcattccc
601 ttacaccgcc tttgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga
661 ctcatggctt agcaggagga tggtgcaaag aacaacgggc ttcttcagac cttaccaaga
721 gtggaacaga aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat
781 attcctatgt tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat
841 taaaccatta aacatactga atatactggc aacgtgtgac tggacgtttg ccggaatagt
901 ggagtctctg atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc
961 tgctatgatc gctcccttac tcggggatta cgagctgcaa gggccagaag acctcgccgt
1021 tgaactcgta cctgtggtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa
1081 aattggcaaa atgttgtcct cagcagcatc aacgctcagg gcttgtaaag atcttggtgc
1141 ctatggctta gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc
1201 caatgagcta gccatggtga gggccataga ggatgctgta ctagatcttg aggcaataga
1261 aaataaccac atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac
1321 actggacatg gaggaggaga aagccagaag gttatccaca aaatctgcat cccctgacat
1381 agttgggaca atcaacgccc tgctggctcg aatagcagcg gccaggtcat tagtccatag
1441 ggccaaggaa gagctatcta gcaggataag accagtagtt gttatgatat ctggcaaacc
1501 aggaataggc aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac
1561 aggggatcaa agagtcggac tcataccaag aaacggtgtg gaccattggg atgcatacaa
1621 aggtgagaga gtcgtgctgt gggacgacta tggcatgagt aaccccattc atgatgctct
1681 tcgcatacaa gaattggctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa
1741 taaaggaaaa gtttttgaca gtgaagtcat aataatcaca acaaaccttg ccaatccagc
1801 cccacttgat tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc
1861 tgaggcacca gacgtggaaa aggcaaaacg ggactttcct ggtcagccag atatgtggaa
1921 ggacgccttc aagccggact tttcacacat caagctacag cttgcacctc agggcggctt
1981 tgacaagaat ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc
2041 tctgattgcc cgtgcatcag gcctactgca tgagaggatg gatgaatttg agctccaagg
2101 tcctacaatc accaccttca atttcgaccg gaacagaatt acagcattca gacaattggc
2161 tgcagaaaac aagtatggac tggtggatac catgaaagtt ggcaatcaat taaaaggagt
2221 gaaaaccatg gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat
2281 catctacggt ggctccacat ttgaccttga atctgatggc aagggcaaag ttttggtgga
2341 aaaggtcaag aacacctctg tacagaccaa caacgagttg gccggggccc tgcaccatct
2401 caaacatgcc cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attctattat
2461 acaaattgcc ggcgctgcgt ttgtcaccac gcgcattgca cgccgcatga acatacaaga
2521 actctggtcg aagccacaat tagatcaaaa tgaatcagag actaaggaag gggcccccaa
2581 gtcagaagat gacgagttcg tcatatcttc taaggacatc aaggaggaag gaaagaaggg
2641 caaaaataag actggccgtg gcaagaaaca cactgcattc tccagcaagg gcctgagcga
2701 tgaggagtat gacgagtaca agaggataag agaagagaga aatgggaagt actctataga
2761 ggagtatctt caagacagag acaggtacta tgaggagctc gccattgcca aggccacgga
2821 agaagacttc tgtgaagagg aagagatcaa aatccgtcag agaattttcc gtcccaccag
2881 gaaacaaaga aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa
2941 aagaaaccct gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt
3001 tgactacaat gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag
3061 ctttggttct ggctggggct tctgggtatc accaagcctg ttcataacat caactcatgt
3121 agtccccgca ggcataacag aagcatttgg agtctccatc aaacaaattc agatccacaa
3181 atcaggtgaa ttttgccgat tcagattccc aaaaccaatt agaccagatg tgacaggaat
3241 gatcttggaa gaaggtgcgc ctgagggcac cgtggcaact gtgctcatca aacgccccac
3301 cggagagctc atgcctcttg cagccagaat gggaacacac gcaaccatga aaatccaagg
3361 ccgcatggtt ggcggacaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga
3421 tttgggaaca actcctggtg actgtggttg tccttacatc tataaaaggg gcaatgacta
3481 catagtcatt ggggtgcaca ctgcagcagc ccgtggtgga aacaccgtca tctgtgccac
3541 acagggaagt gagggtgagg caactcttga gggtggagat gacaaaggaa catactgtgg
3601 ggcacccatt ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag
3661 gtcatcgaac acgccccttc caccagggac atatgagcct gcctacctcg gcggccgtga
3721 tccgcgtgtt aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt
3781 cactgaaccc aggggcaaac ctccaagacc aggtgtattg gaagcggcca aacaaaccat
3841 catcaatgtc ctcgaacaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg
3901 tgcctcactt gacaaaacca cctccagcgg gcaccctcat cacgcccgaa agaatgaatt
3961 ctggaatggt gagaccttca ctggcaaatt ggcagaccaa gcatcaaaag caaacctaat
4021 gtttgaggaa gggaaacaca tgacaccagt gtatacagca gcactcaagg acgagctagt
4081 caagactgag aaaatctatg gaaagatcaa gaagaggctg ctctggggct ctgacttatc
4141 caccatgatc cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcacactg
4201 catatcactc ccagtccgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga
4261 gaaacattcc agatacaagt accactatga tgcagactac tctcgttggg attcaacaca
4321 acagagggca gtactggcag cagccttaga aatcatggtc aaattctctg cagaaccaca
4381 attggcacaa atagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt
4441 taaaatcaca ataaatgaag ggctcccctc tggtgtgcca tgcacttctc aatggaactc
4501 catcgcacac tggctgctaa ctctctgtgc cctgtctgaa gtcaccaaac tgtcccctga
4561 catcatacag gcaaattcca tgttttcatt ttacggtgat gacgagattg tcagcaccga
4621 cataaaattg gaccctgaac agttaaccgc caaattgaag gagtacggcc tgaaaccaac
4681 ccgcccagac aaaaccgagg gacccctgat catcagtgaa gatttgaacg gactcacttt
4741 cctccgaagg acggtgactc gtgacccagc tggctggttt ggaaaactgg accaaagctc
4801 aattttgagg cagatgtact ggactagagg accaaatcat gaagacccca atgagacaac
4861 gataccccat tctcaaagac ccatacagct catggcactg cttggtgaag cctctcttca
4921 cggaccctct ttctacagta aaatcagtaa attggtcata actgaactca aagaaggtgg
4981 gatggacttt tacgtgccaa ggcaggaacc catgttcagg tggatgagat tttctgactt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaacgaga
5161 cgatggcact tgaaccggtg gctggggctt ccatagctgc ccccctgacc ggtcaaaaca
5221 atgtgataga cccctggatt agaatgaact ttgtccaagc cccaaatggt gagtttacag
5281 tgtccccccg caattcccca ggtgaagtat tgctaaattt ggaattaggt cctgaattga
5341 atccattctt ggcgcacctt tcaaggatgt acaatggtta tgcagggggg gttgaagtgc
5401 aggtgctgct cgctgggaat gcgtttacag cgggaaaatt ggtttttgca gcaatccctc
5461 cacattttcc ccttgaaaac ttgagccctg gacaaattac tatgtttcct catgtgatta
5521 ttgatgttag gacgttagaa cctgtcctct tacctctccc agatgttaga aacaacttct
5581 tccattacaa tcagcaaccc gaaccccgaa tgaggcttgt tgctatgttg tatacccctc
5641 ttagatctaa tggttctggt gatgatgtgt ttacagtttc ttgcagggtt ctcacccgcc
5701 cttctcctga ctttgatttt aactatttgg tccccccaac agtggagtcc aaaacaaaac
5761 cattcaccct accaattttg actattgggg aattgtcaaa ttctaggttc ccagctccaa
5821 tagatgaact gtacaccagc cccaatgaag gagtggtggt gcaaccacaa aatggtagat
5881 caacactcga tggtgaacta ctgggcacca cacaacttgt gccttcaaac atttgtgcga
5941 tgcgaggacg catcaatgcc caagtgccag acgatcacca tcaatggaac ttgcaggtca
6001 caaatacaaa tgggaccccc ttcgatccca ccgaagatgt ccctgcacca ttgggcacgc
6061 cggacttcct ggcaaacatc tatggagtca ccagtcagag aaacccagac aacacctgtc
6121 gtgcccacga cggggttttg gcaacttgga gccctaagtt cacacccaag ttaggatccg
6181 ttgtcctagg tgcctgggaa gacagagact ttgatctcaa ccaacccaca aggttcacac
6241 ccgttggatt gtatgataca gaacattttg accagtgggt cctgcccaat tactctggaa
6301 gattgacctt gaacatgaac ttggcaccct ctgtatctcc cctctttcca ggtgaacaaa
6361 ttctcttctt taggtcccat ataccactta agggaggcac ttctaatggt gccattgact
6421 gcctgcttcc ccaggaatgg attcagcatt tctaccagga atcagccccg tcacccacgg
6481 atgtggctct aattaggtat accaaccctg acacaggtcg agtcttgttt gaggccaaat
6541 tgcacagaca ggggttcatt acagtggcaa attctggttc tagacctatt gttgttcctc
6601 ctaatggtta ttttagattt gattcttggg ttaatcaatt ttattctctt gcccccatgg
6661 gaactggtaa cgggcgtaga agggtacagt aatggctgga gcttttatag caggtcttgc
6721 tggtgacata gtcaccaatg gcattgggac actggtaaat gctggggcaa atgcaataaa
6781 tcaaaaggta gattttgaaa ataacaagca attacaacaa gcctctttca atcatgataa
6841 ggaaatgttg caagcccaga ttttggcaac aaaacagtta caggctgata tgattgctct
6901 cagacaaggg gtgttgaccg cgggcggctt ctctcctact gatgcagcaa ggggggcggt
6961 tggtgcacct atgacgcaag tcttggactg gaatgggact aggcattggg cccctggagc
7021 cacaaaaaca acatctttct ccggtgggtt cactagctct tcccatgcta gaactcttga
7081 tttgccaaag aaaacaacag ctgcaccaac cccgatgcct gtatctagac ccagttcttt
7141 tgcttctaca gttcctactc gctcaacagt cattggtggg tcttctaatc ccccttcctc
7201 gatcaggagc tcttctagtg tttcttccca atctactccc tcttcttctc gggttagtga
7261 atgggtgcaa aatcagaata gggcactgga gccgtacatg aggggagcgc tacaaacagc
7321 ttacgtgacg cccccctcca gtagggcttc cagtaatggc acagtctcaa ccgtgccaaa
7381 agaagttttg gactcctgga catctgtgtt taacacccac agacagccgc tcttcgctca
7441 tctccgccgg agaggggagt cacaggctta gtgaaaagat aattttcttc ttttcttctt
7501 tggaaaattt tatctttt
//