Typing tool
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Typing tool
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Complete norovirus genomes
| MG557654 | GII.6 | |
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| GII.P7 |
ORF1: 1..4920
ORF2: 4901..6544
ORF3: 6544..7236
LOCUS MG557654 7236 bp RNA linear VRL 21-SEP-2018
DEFINITION Norovirus GII isolate GII/Hu/ETH/2016/P3 nonstructural polyprotein
gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial
cds.
ACCESSION MG557654
VERSION MG557654.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7236)
AUTHORS Altan,E., Aiemjoy,K., Phan,T.G., Deng,X., Aragie,S., Tadesse,Z.,
Callahan,K.E., Keenan,J. and Delwart,E.
TITLE Enteric virome of Ethiopian children participating in a clean water
intervention trial
JOURNAL PLoS ONE 13 (8), e0202054 (2018)
PUBMED 30114205
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7236)
AUTHORS Altan,E. and Delwart,E.
TITLE Direct Submission
JOURNAL Submitted (20-NOV-2017) Molecular Virology, Blood Systems Research
Institute, 270 Masonic Ave, San Francisco, CA 94118, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7236
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/ETH/2016/P3"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Ethiopia"
/collection_date="Apr-2016"
CDS <1..4920
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUF81829.1"
/translation="DRHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGVVETVILMAELFGIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVTK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRTRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQASQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVSRISKRFCWERWVKPTETQETSESEK
EVAQGKWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPKPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 4901..6544
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUF81830.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6544..>7236
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUF81831.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAV"
ORIGIN
1 gatcggcact gcccctcagt taagatcggg actaagacat taacagttcc ccctgaaccc
61 ccaaatggtg aagacaccgt gcagtttgac gcgaagtcgg aaactgtgcg cgggttgcca
121 gacttgacaa cggtgcagaa tgaacacgaa aacacaccat acactgtccc cccattgagt
181 gaaagggagc acagaccagc tactgaaccg cttcctggca caatactaga gatgtgggat
241 ggtgaattct accattactc tgtgtacgtc agcggtggca aagccctagg ggttcacaag
301 ccccctgcag cgataagcct cgcgacgata gagcttacac ccatatctct ttattggagg
361 cccgtttaca cccccaacta tctggtctgc ccagacacgt tgaagggcct tgctggtgag
421 aagttcccct acacggcctt cagcaacaac tgttacaact tctgttgctg ggtgcttgag
481 ctcaatgaca cgtggcttag caggagaagc atctctagga ccaccggctt cttcaaacca
541 taccagtctt ggaacaggaa accccttcca accgttgacg atggaaagat caagaaggtg
601 gccaacgcaa ttctctgtgc acttggatca ctgttttcaa aaccaattaa ggacctattg
661 ggcaaactta aaccattgaa tttgctgcac ttgctcgcat cgtgtgactg gacgtttgcg
721 ggtgtagtag agacagtcat cctaatggcg gaacttttcg gcatcttttg gacaccgcca
781 gatgtttcca gtttcatagc ctccctgata ggtgattttg aattgcaagg gcctgaggac
841 ctggctgtgg agcttgtacc cgtgatcatg ggtggcatag gaatggttct cggctttacc
901 gctgagaaga taggccgtat gctatcgtcc gctgcatcaa cactacgggc gtgcaaagac
961 ttggggaatt atgctcttga catattgaaa ctggttacga agtggttctt cccaaagaaa
1021 gaagagaaag ccgagatgga aaccctaagg gcgattgagg atgccgtcct ggacatggaa
1081 gctataggaa ataaccatct cacaaccctc ctcaaggaca aggatagcct cacggctttc
1141 atgaagactc tagacctaga agaagagaag gcaaggaagc tgtccaccaa atcatcctcg
1201 ccagacattg tcggcaccat taatgccata ctggctagaa tagctgctgc caggtccctc
1261 ttgcacaagg ctaaagaaga aatgttcagc aggaccagac ccgtggttgt catgatctcg
1321 ggcagacctg gtattggcaa aacccacatg gcaagacact tggctaagag tatcgccaac
1381 accatgagcg gcgaccagag agtggggctc gtcccacgca acggggttga tcattgggac
1441 gcctacaggg gagagagggt ggtcttatgg gatgattatg gcatgggaaa ccctgtcaaa
1501 gacgccctaa cactgcaaga gctggccgac acctgcccag taactctaaa ctgtgacagg
1561 attgagaaca aggggaagat gtttgacagt gatgtcatca taatcacgac caatttagtc
1621 aacccagcgc ccctcgatta tgtgaacttc gaggcgtgct ccagaagggt cgacttcctg
1681 gtctatgcag agtcaccaga aattgagaag gtaaagagag acttccccgg ccaacctgat
1741 atgtggaagg atcattttaa gccagacttt tcccacataa aactgactct agccccacag
1801 ggtggatttg acaagaatgg caacaccccg catggtaagg gtaccatgcg atccctaacc
1861 caggggtccc tgactgcaag ggttgcaggt cttgttcatg agaggagaga cgagtttcag
1921 ctccagggga acgaccttca aacatacaac tttgatacca acagagtctc tgcatttagg
1981 aagctggccg cagacaacaa gtatgggatc atggagacta tgagagtggg cacagcgctt
2041 aagagtgtca agaccttgga agatctgaaa gttgcactga gggatgtgaa gttcaatgag
2101 tgtgagataa tttacagaaa ctccaagtac cgagtctctt ccaatggtaa aggttctgtc
2161 tctgttgaca aagttgagga ccaagcatcc cagaccgcaa acgaagtggg tgcagcactc
2221 cttagactca gacaggcaag agccagatac tatgtcagct gcttccaaga cctcgtttac
2281 actctaatac aggtcgccgg agcatcattc gttgtcagca ggatctctaa aaggttctgc
2341 tgggagagat gggtcaaacc aaccgagacc caggaaacga gtgaatccga aaaggaagtg
2401 gcccaaggta aatgggagat tgagcccaag gacacagaac cagaaggcaa gaagggtaag
2461 aacaagaaag gaagaggcaa gaaacacaca gctttctcca gtaaaggcct gagtgatgag
2521 gagtatgacg agtacaagag aatcagagaa gaaaggaacg gaaaatactc cattgaggaa
2581 tacctgcaag accgggatcg ctactatgag gaagtggcag ttgcccgggc gacagaggag
2641 gacttctgtg aagaggagga ggccaagata agacaaagga tctttcgccc cacaaagaaa
2701 cagaggaagg aagaaagggg ggtgcttggt ttggttactg gctcagacat caggaagaga
2761 agaccagacg attttcaacc gaagggcaac ctgtgggcag acgacaccag gagtgtagac
2821 tacaacgaga gacttgattt cgaggctccc ccgagtgtct ggtcaagaat agtcccattg
2881 ggcactggct ggggcttctg ggtctcatca aacctcctga tcacaacaac gcacgtccta
2941 cctaagggga ttaatgagct ctttggagtt gagatcaaac agatccagat tcataagtct
3001 ggagagttct gcaggttcag attcccaaga ccaattagac cagatgtcac agggcttgta
3061 ctggaggaag gcgctccaga aggcactgtc tgctccatac tcgtaaagag acctacaggt
3121 gagatgatcc ccctggcagt aaggatgggc acgcatgcat ccatgaaaat acagggcagg
3181 accgtcggtg gccagatggg aatgctcctc acaggggcaa atgcgaagaa catggacctt
3241 ggcaccggtc ctggtgactg cggttgccct tacatctaca aacgtggcaa tgatatagtt
3301 gtcgcaggtg tccacaccgc agcagcccgg ggaggtaaca ctgtcatatg tgccactcaa
3361 gggcaagatg gggaagcagt ccttgaggga aatgagaacc ttggcactta ctgcggtgcc
3421 ccaatcttgg gtccaggcaa ggcgcctaaa cttagcacga agaccaagtt ctggcgttca
3481 tcaccagacg ctttgccgcc aggcacttat gagcctgcct acttgggagg taaggaccct
3541 agagtggaaa aaggaccatc cctgcagcaa gtcatgaggg accagctaaa accttttaca
3601 gaacccaggg gcaagccacc taaacctgca gtcttagaag aagccaaaaa gacagtgatg
3661 aatgttctag agcaaactat tgaccctgct aaaccgtgga cctattccca agcatgtgcc
3721 tcactggaca agaccacttc cagtggtagc ccccatcatg tcaggaaaaa tgaccattgg
3781 aatggggaat ccttcactgg ccccctcgca gaccaagcat ccaaagccaa tctcatgtac
3841 gagcaggcca aacatgtgca gcccgtgtac acggccgcac ttaaagatga actagtcaaa
3901 actgataaga tctacaagaa gataaagaaa aggctcttat gggggtcgga tcttggtaca
3961 atgatcaggt gtgccagggc ctttggcggt ctcatggata gcatgaaggc aagctgcata
4021 gccctcccat gtagggtagg aatgaacatg aatgaagatg gccccatcat atttgacaag
4081 cattctaagt ataggtacca ctatgatgct gactattcca ggtgggactc aacccagcaa
4141 aggagcattc tctcggccgc tatggaagtg atggtgcggt tctctgctga accagagctg
4201 gcacaagtgg ttgcagagga cctcctggca cccagccaac tagatgttgg cgattttgtc
4261 atctcagtcc aggagggtct gccatcaggg gtcccatgca catcacaatg gaattcaata
4321 gcacactgga tcctaacctt gagtgcaatg gcagaagtat cgggtctctc accagatgtt
4381 gttcaagccc actcctgttt ctcattctac ggtgatgatg agatcgtcag cactgacatc
4441 aaccttgatc ccatgaagtt gacacagaag ctcagagagt atggcctggt ccccacccga
4501 cctgacaaaa ctgagggtcc cctcgtaata actgaagatc tcaccggtct aacgttcctg
4561 cgtaggtcaa ttgcacggga cccagctggg tggtttggaa aattggacca agactcaatc
4621 ctcagacagt tgtactggac aaggggcccc aaccatgaga acccatatga gagcatggtc
4681 cctcattccc agcgggccac acaacttatg gcccttctcg gtgaagcttc actgcatggt
4741 ccccagtttt acaagaaagt tagtaagatg gttattaatg agatcaaaag tggtggtctg
4801 gaattctatg tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc
4861 acatgggagg gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgaatga
4921 cgctgctcca tcgaatgatg gtgctgccaa cctcgtacca gaggccacca atgaggttat
4981 ggcacttgag ccggtggtgg gagcctcaat tgctgctcct gtcgtcggcc aacaaaatat
5041 aattgacccc tggattagag aaaattttgt tcaggcacca cagggtgagt ttactgtttc
5101 accaaggaac tcacctggtg agatgcttct aaatcttgaa ttaggccctg agctcaaccc
5161 ttatctgagt cacttgtccc gcatgtataa cggctatgct ggtggtatgc aggttcaggt
5221 ggtcctagct gggaatgcgt tcacagctgg taaaatcatc tttgccgccg tcccaccaca
5281 ttttcctgtt gagaacatta gtgcagctca aatcacaatg tgcccccatg taattgttga
5341 tgtaagacag cttgagccag tgcttttgcc cctccctgac ataaggaata ggttctttca
5401 ttataatcag gaaaataccc cccggatgag acttgtggct atgttgtata caccccttag
5461 agcaaattct ggtgaggatg tgtttacggt gtcttgcaga gttctgaccc gccctgcccc
5521 cgactttgag ttcacgtttt tggtgccacc aaccgtggag tcaaagacta agccctttac
5581 actccctatt ttgactcttg gagagctgtc caactccagg ttccccgctc cgatagacat
5641 gttgtacact gaccccaatg aggcaattgt ggtgcaaccg caaaatggca ggtgcactct
5701 agatggaaca cttcaaggga ccacccaact ggtgcccacc caaatttgct ccttcagggg
5761 cacgctaatt agccagacgt cgaggtctgc agattcaaca gattcagccc cacgggtgag
5821 gaaccaccct ctccacgttc agctgaagaa cctcgatggg acaccatatg acccaacaga
5881 tgaggtgcca gcagttttgg gtgccataga tttcaaagga actgtgtttg gggtcgctag
5941 ccaaagaaac accacaggga actccatagg agcaacccgc gcccatgaag tgcacataga
6001 caccacaaac cctaggtaca ccccaaagct tggctctgtg ttgatgtatt ctgagtctac
6061 tgattttgat gatggacaac ccacccgctt cacccccatt ggcatgggag ccgacgattg
6121 gcaccaatgg gaattgcccg aatattctgg tcatctcact cttaatatga atttggcccc
6181 tgcagttgcc cctgccttcc ctggtgagcg cattctcttc ttcagatcag tggtgccgtc
6241 cgctggtggc tatggatcag gtcacataga ttgcctcatc ccacaagagt gggttcagca
6301 cttctaccag gaggccgctc catcacagtc cgcggtggct cttatcaggt atgtcaaccc
6361 tgacactgga agaaacatct ttgaggcaaa actgcataga gaagggttca tcactgtggc
6421 aaattctgga aacaacccca tagtagtgcc cccaaatgga tacttcaggt ttgaggcctg
6481 ggtcaatcaa ttctacacac tcacccccat gggaactgga caggggcgca gaagagttca
6541 ataatggcag gagctttctt agctggattg gcaggtgacg ccataacaag tggtgtcggg
6601 tccctaatca atgctggagc caatgcaatt aaccaaaagg tagaatatga ttttaataaa
6661 cagctccaat tggcatcctt caaacatgac aaagagatgt tgcaatcaca agtactggcc
6721 actaaacaac tccagcagga gatgatgaac ataaggcaag gggtcttgtc cgctggcggc
6781 ttttccccta cagacgccgc gagaggtgct gtgaacgcgc cgatgacaaa aattttggat
6841 tggaatggaa caaggtactt tgccccaaat agtatgaaga caaccagtta ttcgggccag
6901 ttttccagca accctgtgca taggcaaccc actttacccc gctctgaacc cccaaaaatt
6961 aaggttaata gtgattctgc tagtgtgtat agttctgcat ccactgctcc ttcacaatca
7021 actcactcga cggctttgac tgcggggtct agttcatcta ggacaacatc ctcttctgca
7081 gtagcttcca ccctatctag gactagtgac tgggtaagag gacaaaatga aaggcttagc
7141 ccgtttatgg atggtgctct ccaaacaact tttgtcacac caccatcgag caaagcttca
7201 tcatatgggt cggtctcaac cgtccccaaa gctgtt
//