Typing tool
|
Complete norovirus genomes
MG551869 | GII.23 | ||
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GII.P23 |
ORF1: 1..4884 ORF2: 4865..6496 ORF3: 6496..7260LOCUS MG551869 7307 bp RNA linear VRL 17-DEC-2017 DEFINITION Norovirus GII strain Hu/GT/2012/GII.P23-GII.23/Guatemala City3872 nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION MG551869 VERSION MG551869.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7307) AUTHORS Chhabra,P., Lopez,M.R., Bryan,J., Castro,C.J., Marine,R., Ng,T. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (20-NOV-2017) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7307 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GT/2012/GII.P23-GII.23/Guatemala City3872" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Guatemala" /collection_date="18-Jul-2012" /note="genotype: GII.P23-GII23" CDS <1..4884 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AUD55005.1" /translation="TCGHVVNGEDIVIKYTKQGDTVSGVPTVSTADISPLHDTAYSVP PLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVEKGQVLGVHKPPAAMSIARIELTPL SLYWRTVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSR TTGFYRPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNVLNI VTNCDWTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVI LGGIGMVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEME MVRTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVG TINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLS GDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRI ENKGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQP DMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLD EFDLQGQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKD IRIKPCRIIYNSMAYDLDSNGSGRVNVKKVGDQRIQANNELNSALNKLRGARIRYYVK CFQEMVYSLLQFAGAAFVTSRMAQRMNVNKLWTKPEKQQEASAGPPTPPTEEWTITPM DTIQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRY YEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFK PKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNM SEAFGVPISQIQIHRSGEFCKMRFPKTIRPDVSGMILEEGAPEGTVVTILVKRPTGEL MPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVSGDCGCPYVYKRGNDWV VIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFW RSSNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAK ETICNVLEQTIEPPQRWSYAQACASLDKTTSSGYPHHKKKNDNWNGETFTGVLADQAS KANLMYEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLM DEMKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGAALDI MVRYSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLC AMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEG PLIIRESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQ RPVQLMSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTW EGDRNLAPESVNEDGVE" CDS 4865..6496 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUD55006.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG VDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT QLITSNICSFRGSISGHEGNDDQHLWHLNITNPNGTPFDPTEDVPAPLGTPDFRGQLY GVISQRDREGTPSENNQKANRSHEGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPMKGGYGSP FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" CDS 6496..7260 /note="minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUD55007.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA SFAHDKDMLKAQVEATRKLQADMIAIKQGVLVAGGFSPTDAARGAINAPMTKALDWNG TRYWAPNATSTTSMSGGFTGQVSHGTIPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHLPGSLRTVFVTPPSSSASSSG TVSTVPKGVLDSWTSAFNTHRQPLFAHLRRRGESNV" 3'UTR 7261..7307 ORIGIN 1 acttgtggcc atgttgtaaa tggtgaggac atagtcatca agtataccaa acaaggggat 61 acagtcagtg gagtgcccac cgtctccact gcagacatat ccccattgca tgacaccgca 121 tatagtgtcc cccccttgga ccagagggaa aaggtggacg caaaagaacc cctaaccggg 181 tcaatacttg agatgtggga tggtgagatc taccattacg ggctctatgt ggagaaaggg 241 caagttcttg gtgtgcacaa accaccagct gctatgagca ttgcacgcat cgaactgacc 301 cccctctctc tatactggag aacagtttac acacctccct acctggtggc tcctgacacc 361 cttaagaagc tccacggtga gacattcccc tacacagcat ttgataacaa ctgctactca 421 ttttgttgtt gggttctgga cctgaacgac tcgtggctca atagaaaatt cgtgtcaagg 481 accacaggct tctacagacc ctaccaggag tggaacagga aaccattgcc aaccatggac 541 gaaggaaagc ttaagaaggt ggccaacgtc ttcctgtgtg gcctgtctgg gcttttcacc 601 aggcccatca aagatctcat aggcaaactg aaaccactga acgtccttaa cattgtcacc 661 aattgcgatt ggacgttccc gggagtcgta gaggcgatca tcctcctcgc agagctcttt 721 gggatcttct ggacaccacc agacatatct gccttcgtcg cctctctgtt aggtgactat 781 gagatgcaag gccccgagga cattgcgacc gagatagtcc cagtcattct aggtggtatt 841 ggcatggtac ttggtttcac taaagagaag atcggtcggt tactgggctc cgcggcatca 901 tcactcaggg cctgcaggga aatcggcaac tatgggatag aggtggtaaa attggtgatg 961 aaatggttct ttccaaccaa aagtgaggtc aatgagatgg aaatggtcag aacaatagag 1021 gacgcagtgc tcgactttga ggcaattgaa aacaatcaca tgacagctct actcaaagac 1081 aaaaatagtc tggccacttt cctcagggca ttggatatgg aagaagagaa agcgcggaaa 1141 ctatcaacca aatccgcgtc ccccgacata gtcggcacta taaatgcact cctggcgaga 1201 atcgccgctg ctaggtcact ggtgcacagg gctaaggaag agatgtcatc aaggatgcgt 1261 cctgttgtca tcatgatatc cgggcgacct gggataggga aaacccatct ggcccgtgac 1321 ctagctaaga aaatggcagc cactctgtca ggtgatcaga gagtgggcct ggtcccaagg 1381 aatggtgttg accattggga tgcatacaag ggagaaagga tcgtcctgtg ggatgattac 1441 ggtatgagca accccgtggc agacgccctc cgactccagg aactcgccga tacatgcccc 1501 ctgacactca actgtgatag gatagagaac aaaggaaagg tctttgacag tgacaccctg 1561 atcatcacta ctaatctggc caacccggcc cccctggact atgtgaactt tgaagcttgc 1621 tcacgccgca tagatttcct cgtttatgcg gactctcctt cagttgataa ggcaaagaga 1681 gacttcccag gccaaccaga catgtggaaa gacgccttca aaccagactt ctcacacata 1741 aagctacaac tggcaccaca gggaggattt gacaagaatg gaaacacccc acatgggaag 1801 ggcgtcatga aaacactaac cacacactcc ctcatagccc gtgccaccgg tttactccat 1861 gaaagattag atgagtttga cttacagggt caagaattgc cagtctacaa cttcgaccaa 1921 aacaaggtgg ccgctttccg gaaactagcg gctgacaaca agtatggtct catggacact 1981 ttgagggcag gcaacaaact aaaggaggtt aagaatctag accaattcaa ggaagcggtg 2041 aaggacatcc gcataaagcc ttgcaggata atttacaact caatggctta tgatctggat 2101 tcaaatggat caggcagagt caatgttaag aaagtgggag accaaaggat ccaggccaac 2161 aatgaactca actccgcact caacaaactg cgcggggcta gaatcagata ctatgtgaag 2221 tgcttccagg aaatggtcta ctcccttctc cagtttgctg gtgcggcctt cgttacatca 2281 agaatggcac aaagaatgaa tgtcaacaag ctgtggacaa aaccagaaaa acaacaggaa 2341 gcctctgcag ggccccccac ccccccaact gaagagtgga ccataacacc aatggacacg 2401 atccaggaag gtaagaaggg caagaacaaa agtggtaggg gtaagaagca cactgcattc 2461 tctagtaagg gccttagtga tgaggagtat gatgagtaca agagaatcag ggaggagcgc 2521 caagggaagt actccataga agaatatctc caggacaggg accggtacta tgaagaattg 2581 gccatagcca aagcaacaga ggaggacttc tgtgaggagg aggagatcaa gataaggcaa 2641 agaattttcc gcccaaccag gaaacagcgt agggaggaga gagccactct aggccttgtc 2701 acaggcagtg agattagaaa gaggaacccc gatgatttca aaccaaaagg aaaactgtgg 2761 gctgatgatg accgtagtgt caactacaat gaaaggatag actttgaagc ccctcccagc 2821 ctttggtcca gaatagtcaa cttcggttcg ggttggggct tctgggtctc atcaaatttg 2881 ttcatcacct ccacacacgt catcccacaa aacatgtctg aggctttcgg ggtaccaata 2941 agccaaatcc agatacatag gagtggagag ttctgcaaaa tgaggttccc aaagaccatc 3001 aggcccgatg tctctggcat gattcttgag gaaggcgcgc ctgaaggcac agtggtgacc 3061 atactggtca aaagaccaac tggtgagctc atgccattgg cagctcgcat gggcacccac 3121 gccaccatga aaatacaggg gaggatgatt ggaggtcaaa tggggatgct tctcacagga 3181 tccaacgcca aaaacatgga ccttggcaca gtgtctggcg attgtggctg cccttatgtc 3241 tacaaaagag gcaatgattg ggtagttatc ggggtgcaca ccgccgccgc caggggtggc 3301 aacacggtga tctgtgccac tcaggggcca gatggtgaag ccacacttga gggtggcgac 3361 aaccatggga cctattgtgg cgcgccaata ttaggtccag gaaacgcccc gaaactcagc 3421 accaagacca aattctggag gtcctccaac accccgctcc cccctggcac atatgaacca 3481 gcctacctcg gtggtaagga cccaagggtc aagggcggcc catcactaca acaagtcatg 3541 agggagcaac tcaagccctt cactgcccca cgtggaaagc caccaaggcc agcagttttg 3601 gaggccgcta aggaaaccat ctgcaatgtg ctggagcaaa ccattgaacc gccccaaaga 3661 tggtcctatg cacaggcttg tgcttcccta gacaaaacaa cctcaagtgg ctacccccac 3721 cacaagaaga aaaatgacaa ttggaacggt gaaaccttca ctggtgttct ggctgatcag 3781 gcttcaaaag caaatctcat gtatgagcag gggaaacaca tgcagcctgt gtacacaggc 3841 gcgctcaaag atgagcttgt caaaaccagc aagatctatg aaactattaa gaagagactc 3901 ttgtggggtt cagacctcgg cacaatgata cgctgtgcca ggtcatttgg tggtctcatg 3961 gatgaaatga aggcaaactg tgtgaaccta ccagtcagag ttggcatgaa tatgaatgaa 4021 gatggtccca taatctttga aaagcattca aagtacagat accactatga tgctgactat 4081 tccaggtggg actcaacaca acagagatgt gtcctgggtg ctgcacttga cataatggtt 4141 aggtactcag ccgaaccaga attggcacaa atcgtggctg aggacttgct gtcgcctagc 4201 gtcatggacg tcggcgactt caaaatcacc ataaatgagg gcttaccatc aggagttccg 4261 tgcacatccc agtggaactc aatagctcat tggctgttaa cactctgtgc catgtcagaa 4321 gtctcaggac tgtcaccaga tgtggtacag tcaaattcat gcttctcttt ctatggggat 4381 gatgaaatag ttagcactga catcaaattg gacccccaaa aactgactga caagttgaga 4441 gagtatggct taattccaac taggcccgac aaaacagaag gaccactcat aatcagagag 4501 agtctagaag gtctaacatt cttaaggagg gatgtgtgca gagacccagc agggtggtat 4561 ggcaaacttg accaatcctc aatcatgaga cagttgtact ggacaaaagg acccaaccat 4621 gaggacccca atgaaacaat gatcccacat tcccagaggc cagtgcaatt gatgtcccta 4681 cttggtgagg cggccctaca cggaccgacg ttctataaga gagttagcaa gttggtcatc 4741 actgaattaa aggaaggtgg aatggatttc tatgtgccca gacaagaacc tatgtttaga 4801 tggatgagat tctctgactt aagcacgtgg gagggcgatc gcaatctggc tcccgaaagt 4861 gtgaatgaag atggcgtcga atgacgccgc tccatctaat gatggtgcag ccggtctcgt 4921 accagagatc aacaacgaga caatggcttt ggaaccagtg gcaggaggag caattgcagc 4981 cccactaact ggacaaacaa atttcattga tccctggatt agaggtaatt atgtgcaagc 5041 accaaatggt gaatttacag tgtcccccag aaattcgccc ggtgaaattt tgcttaattt 5101 agaattaggc cctgaactca acccattctt gtcccatcta tctagaatgt ataatgggta 5161 tgctggcggt gttgatgtcc aagttatcat ggcaggcaat gccttcaccg ctggtaagat 5221 tatctttgca gcaatacctc cccacttccc cgtggaaaat cttagtcccc ctcagatcac 5281 catgttccct catattatag tggatgttag gacccttgaa cccataaata tccctgtacc 5341 agatgttagg aacaacttct tccattataa tcaaaacaat gagtctcgca tgagactggt 5401 ggccatgttg tacacccctc ttaggtctaa tgggtctgct gaagatgttt tcacagtgtc 5461 atgtagggtc ttaacaaaac catctgcaga ctttgaattc aattatctag tccccccaac 5521 tgtagagtca aggactaaac ccttcacaat accaatactc acaattgggg aaatgacaaa 5581 ttcaagattc ccagtgccta ttgacatgct tcataccagt ccaacagaaa acattgttgt 5641 tcaaccacaa aatggcagat gcaccataga tggtgagttg cttggcacca ctcaactgat 5701 cacttccaat atctgttcat tcagaggatc catctcaggg catgaaggca atgatgacca 5761 acacctgtgg cacctcaaca tcacaaaccc caatggcact ccttttgacc ccactgaaga 5821 tgtacctgcc ccccttggaa ccccagattt caggggtcaa ttgtacggtg tcatctccca 5881 gcgagacaga gagggaacac cctcggaaaa caatcagaag gcaaacaggt cccacgaggg 5941 agtgatttca acaatctcac caaaatttgt ccccaagtta ggttcagtca tgattggcac 6001 atggactact gatgatatca aaaaccagcc atccaagttc accccaattg gcctcaatga 6061 tgatgataat tttaaacaat gggaattgcc aaattattct ggggcgctca ctctcaacat 6121 ggggttggca cctagtgttt tccccaccta tcctggtgaa caaatccttt tcttccgctc 6181 ctatctgcca atgaagggag ggtacggtag tccatttatt gactgcctag tacctcaaga 6241 atgggtcgct cacttctacc aggagtcagc acccgcacaa acagatgtgg ccctaatcag 6301 gtatgtaaac cccgaaacag gacgtgtcct tttcgaggcc aaattgcaca gacaggggtt 6361 cattaccgtt gccaagagcg gcgacagccc catcaatgtg cctgccaatg gttattttag 6421 gtttgattct tgggttaacc agttttactc tcttgccccc atgggaactg ggaacgggcg 6481 tagaaggatt cagtaatggc tggagctttt atagcaggat tggctggtga catgctcaca 6541 aacacagtag ggtctctagt taatgcagga gctaatgcta ttaatcagaa aattgatttt 6601 gagaataata aatatttcca aaatgcatca tttgcccatg ataaggatat gctgaaagca 6661 caggttgagg cgaccaggaa acttcaggct gacatgattg ccatcaagca aggagtatta 6721 gtcgcgggcg gcttttcccc tactgatgca gctcggggag caatcaacgc ccccatgaca 6781 aaggccctag attggaatgg aacaaggtac tgggcgccaa atgccacctc caccacttca 6841 atgtcaggtg gcttcacagg acaggtttcg cacgggacca taccaaattt taaaaccaac 6901 caggctccca aacccccacc tagtagtggg tcttcagtaa ggtccaactc aacccaactc 6961 actagtctga gctcccactc ctctgggtca tctcgatcca gcggatcaac agtggttagc 7021 tctttgcctt cttctagcag gactagggat tgggtcaatc aacaaaatct caatttggaa 7081 ccacatttgc ctgggtctct cagaacagtt tttgtcactc caccatctag ttcagcctct 7141 agttcaggca cagtctcaac cgtgcctaag ggtgttttgg actcctggac atctgcattc 7201 aacacacaca gacagccgct ttttgcacac cttcgcagaa ggggggagtc aaatgtttag 7261 tgaaaagatt attttaaatt tgatttaatt ttaaatttga ttggcat //