Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MG551869 | GII.23 | |
|
|---|---|---|---|
| GII.P23 |
ORF1: 1..4884
ORF2: 4865..6496
ORF3: 6496..7260
LOCUS MG551869 7307 bp RNA linear VRL 17-DEC-2017
DEFINITION Norovirus GII strain Hu/GT/2012/GII.P23-GII.23/Guatemala City3872
nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes,
complete cds.
ACCESSION MG551869
VERSION MG551869.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7307)
AUTHORS Chhabra,P., Lopez,M.R., Bryan,J., Castro,C.J., Marine,R., Ng,T. and
Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (20-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7307
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GT/2012/GII.P23-GII.23/Guatemala City3872"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Guatemala"
/collection_date="18-Jul-2012"
/note="genotype: GII.P23-GII23"
CDS <1..4884
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUD55005.1"
/translation="TCGHVVNGEDIVIKYTKQGDTVSGVPTVSTADISPLHDTAYSVP
PLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVEKGQVLGVHKPPAAMSIARIELTPL
SLYWRTVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSR
TTGFYRPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNVLNI
VTNCDWTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVI
LGGIGMVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEME
MVRTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVG
TINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLS
GDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRI
ENKGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQP
DMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLD
EFDLQGQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKD
IRIKPCRIIYNSMAYDLDSNGSGRVNVKKVGDQRIQANNELNSALNKLRGARIRYYVK
CFQEMVYSLLQFAGAAFVTSRMAQRMNVNKLWTKPEKQQEASAGPPTPPTEEWTITPM
DTIQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRY
YEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFK
PKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNM
SEAFGVPISQIQIHRSGEFCKMRFPKTIRPDVSGMILEEGAPEGTVVTILVKRPTGEL
MPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVSGDCGCPYVYKRGNDWV
VIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFW
RSSNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAK
ETICNVLEQTIEPPQRWSYAQACASLDKTTSSGYPHHKKKNDNWNGETFTGVLADQAS
KANLMYEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLM
DEMKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGAALDI
MVRYSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLC
AMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEG
PLIIRESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQ
RPVQLMSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTW
EGDRNLAPESVNEDGVE"
CDS 4865..6496
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD55006.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ
TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG
VDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD
VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP
TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT
QLITSNICSFRGSISGHEGNDDQHLWHLNITNPNGTPFDPTEDVPAPLGTPDFRGQLY
GVISQRDREGTPSENNQKANRSHEGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF
TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPMKGGYGSP
FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS
PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6496..7260
/note="minor structural protein; minor capsid protein;
small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD55007.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA
SFAHDKDMLKAQVEATRKLQADMIAIKQGVLVAGGFSPTDAARGAINAPMTKALDWNG
TRYWAPNATSTTSMSGGFTGQVSHGTIPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS
HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHLPGSLRTVFVTPPSSSASSSG
TVSTVPKGVLDSWTSAFNTHRQPLFAHLRRRGESNV"
3'UTR 7261..7307
ORIGIN
1 acttgtggcc atgttgtaaa tggtgaggac atagtcatca agtataccaa acaaggggat
61 acagtcagtg gagtgcccac cgtctccact gcagacatat ccccattgca tgacaccgca
121 tatagtgtcc cccccttgga ccagagggaa aaggtggacg caaaagaacc cctaaccggg
181 tcaatacttg agatgtggga tggtgagatc taccattacg ggctctatgt ggagaaaggg
241 caagttcttg gtgtgcacaa accaccagct gctatgagca ttgcacgcat cgaactgacc
301 cccctctctc tatactggag aacagtttac acacctccct acctggtggc tcctgacacc
361 cttaagaagc tccacggtga gacattcccc tacacagcat ttgataacaa ctgctactca
421 ttttgttgtt gggttctgga cctgaacgac tcgtggctca atagaaaatt cgtgtcaagg
481 accacaggct tctacagacc ctaccaggag tggaacagga aaccattgcc aaccatggac
541 gaaggaaagc ttaagaaggt ggccaacgtc ttcctgtgtg gcctgtctgg gcttttcacc
601 aggcccatca aagatctcat aggcaaactg aaaccactga acgtccttaa cattgtcacc
661 aattgcgatt ggacgttccc gggagtcgta gaggcgatca tcctcctcgc agagctcttt
721 gggatcttct ggacaccacc agacatatct gccttcgtcg cctctctgtt aggtgactat
781 gagatgcaag gccccgagga cattgcgacc gagatagtcc cagtcattct aggtggtatt
841 ggcatggtac ttggtttcac taaagagaag atcggtcggt tactgggctc cgcggcatca
901 tcactcaggg cctgcaggga aatcggcaac tatgggatag aggtggtaaa attggtgatg
961 aaatggttct ttccaaccaa aagtgaggtc aatgagatgg aaatggtcag aacaatagag
1021 gacgcagtgc tcgactttga ggcaattgaa aacaatcaca tgacagctct actcaaagac
1081 aaaaatagtc tggccacttt cctcagggca ttggatatgg aagaagagaa agcgcggaaa
1141 ctatcaacca aatccgcgtc ccccgacata gtcggcacta taaatgcact cctggcgaga
1201 atcgccgctg ctaggtcact ggtgcacagg gctaaggaag agatgtcatc aaggatgcgt
1261 cctgttgtca tcatgatatc cgggcgacct gggataggga aaacccatct ggcccgtgac
1321 ctagctaaga aaatggcagc cactctgtca ggtgatcaga gagtgggcct ggtcccaagg
1381 aatggtgttg accattggga tgcatacaag ggagaaagga tcgtcctgtg ggatgattac
1441 ggtatgagca accccgtggc agacgccctc cgactccagg aactcgccga tacatgcccc
1501 ctgacactca actgtgatag gatagagaac aaaggaaagg tctttgacag tgacaccctg
1561 atcatcacta ctaatctggc caacccggcc cccctggact atgtgaactt tgaagcttgc
1621 tcacgccgca tagatttcct cgtttatgcg gactctcctt cagttgataa ggcaaagaga
1681 gacttcccag gccaaccaga catgtggaaa gacgccttca aaccagactt ctcacacata
1741 aagctacaac tggcaccaca gggaggattt gacaagaatg gaaacacccc acatgggaag
1801 ggcgtcatga aaacactaac cacacactcc ctcatagccc gtgccaccgg tttactccat
1861 gaaagattag atgagtttga cttacagggt caagaattgc cagtctacaa cttcgaccaa
1921 aacaaggtgg ccgctttccg gaaactagcg gctgacaaca agtatggtct catggacact
1981 ttgagggcag gcaacaaact aaaggaggtt aagaatctag accaattcaa ggaagcggtg
2041 aaggacatcc gcataaagcc ttgcaggata atttacaact caatggctta tgatctggat
2101 tcaaatggat caggcagagt caatgttaag aaagtgggag accaaaggat ccaggccaac
2161 aatgaactca actccgcact caacaaactg cgcggggcta gaatcagata ctatgtgaag
2221 tgcttccagg aaatggtcta ctcccttctc cagtttgctg gtgcggcctt cgttacatca
2281 agaatggcac aaagaatgaa tgtcaacaag ctgtggacaa aaccagaaaa acaacaggaa
2341 gcctctgcag ggccccccac ccccccaact gaagagtgga ccataacacc aatggacacg
2401 atccaggaag gtaagaaggg caagaacaaa agtggtaggg gtaagaagca cactgcattc
2461 tctagtaagg gccttagtga tgaggagtat gatgagtaca agagaatcag ggaggagcgc
2521 caagggaagt actccataga agaatatctc caggacaggg accggtacta tgaagaattg
2581 gccatagcca aagcaacaga ggaggacttc tgtgaggagg aggagatcaa gataaggcaa
2641 agaattttcc gcccaaccag gaaacagcgt agggaggaga gagccactct aggccttgtc
2701 acaggcagtg agattagaaa gaggaacccc gatgatttca aaccaaaagg aaaactgtgg
2761 gctgatgatg accgtagtgt caactacaat gaaaggatag actttgaagc ccctcccagc
2821 ctttggtcca gaatagtcaa cttcggttcg ggttggggct tctgggtctc atcaaatttg
2881 ttcatcacct ccacacacgt catcccacaa aacatgtctg aggctttcgg ggtaccaata
2941 agccaaatcc agatacatag gagtggagag ttctgcaaaa tgaggttccc aaagaccatc
3001 aggcccgatg tctctggcat gattcttgag gaaggcgcgc ctgaaggcac agtggtgacc
3061 atactggtca aaagaccaac tggtgagctc atgccattgg cagctcgcat gggcacccac
3121 gccaccatga aaatacaggg gaggatgatt ggaggtcaaa tggggatgct tctcacagga
3181 tccaacgcca aaaacatgga ccttggcaca gtgtctggcg attgtggctg cccttatgtc
3241 tacaaaagag gcaatgattg ggtagttatc ggggtgcaca ccgccgccgc caggggtggc
3301 aacacggtga tctgtgccac tcaggggcca gatggtgaag ccacacttga gggtggcgac
3361 aaccatggga cctattgtgg cgcgccaata ttaggtccag gaaacgcccc gaaactcagc
3421 accaagacca aattctggag gtcctccaac accccgctcc cccctggcac atatgaacca
3481 gcctacctcg gtggtaagga cccaagggtc aagggcggcc catcactaca acaagtcatg
3541 agggagcaac tcaagccctt cactgcccca cgtggaaagc caccaaggcc agcagttttg
3601 gaggccgcta aggaaaccat ctgcaatgtg ctggagcaaa ccattgaacc gccccaaaga
3661 tggtcctatg cacaggcttg tgcttcccta gacaaaacaa cctcaagtgg ctacccccac
3721 cacaagaaga aaaatgacaa ttggaacggt gaaaccttca ctggtgttct ggctgatcag
3781 gcttcaaaag caaatctcat gtatgagcag gggaaacaca tgcagcctgt gtacacaggc
3841 gcgctcaaag atgagcttgt caaaaccagc aagatctatg aaactattaa gaagagactc
3901 ttgtggggtt cagacctcgg cacaatgata cgctgtgcca ggtcatttgg tggtctcatg
3961 gatgaaatga aggcaaactg tgtgaaccta ccagtcagag ttggcatgaa tatgaatgaa
4021 gatggtccca taatctttga aaagcattca aagtacagat accactatga tgctgactat
4081 tccaggtggg actcaacaca acagagatgt gtcctgggtg ctgcacttga cataatggtt
4141 aggtactcag ccgaaccaga attggcacaa atcgtggctg aggacttgct gtcgcctagc
4201 gtcatggacg tcggcgactt caaaatcacc ataaatgagg gcttaccatc aggagttccg
4261 tgcacatccc agtggaactc aatagctcat tggctgttaa cactctgtgc catgtcagaa
4321 gtctcaggac tgtcaccaga tgtggtacag tcaaattcat gcttctcttt ctatggggat
4381 gatgaaatag ttagcactga catcaaattg gacccccaaa aactgactga caagttgaga
4441 gagtatggct taattccaac taggcccgac aaaacagaag gaccactcat aatcagagag
4501 agtctagaag gtctaacatt cttaaggagg gatgtgtgca gagacccagc agggtggtat
4561 ggcaaacttg accaatcctc aatcatgaga cagttgtact ggacaaaagg acccaaccat
4621 gaggacccca atgaaacaat gatcccacat tcccagaggc cagtgcaatt gatgtcccta
4681 cttggtgagg cggccctaca cggaccgacg ttctataaga gagttagcaa gttggtcatc
4741 actgaattaa aggaaggtgg aatggatttc tatgtgccca gacaagaacc tatgtttaga
4801 tggatgagat tctctgactt aagcacgtgg gagggcgatc gcaatctggc tcccgaaagt
4861 gtgaatgaag atggcgtcga atgacgccgc tccatctaat gatggtgcag ccggtctcgt
4921 accagagatc aacaacgaga caatggcttt ggaaccagtg gcaggaggag caattgcagc
4981 cccactaact ggacaaacaa atttcattga tccctggatt agaggtaatt atgtgcaagc
5041 accaaatggt gaatttacag tgtcccccag aaattcgccc ggtgaaattt tgcttaattt
5101 agaattaggc cctgaactca acccattctt gtcccatcta tctagaatgt ataatgggta
5161 tgctggcggt gttgatgtcc aagttatcat ggcaggcaat gccttcaccg ctggtaagat
5221 tatctttgca gcaatacctc cccacttccc cgtggaaaat cttagtcccc ctcagatcac
5281 catgttccct catattatag tggatgttag gacccttgaa cccataaata tccctgtacc
5341 agatgttagg aacaacttct tccattataa tcaaaacaat gagtctcgca tgagactggt
5401 ggccatgttg tacacccctc ttaggtctaa tgggtctgct gaagatgttt tcacagtgtc
5461 atgtagggtc ttaacaaaac catctgcaga ctttgaattc aattatctag tccccccaac
5521 tgtagagtca aggactaaac ccttcacaat accaatactc acaattgggg aaatgacaaa
5581 ttcaagattc ccagtgccta ttgacatgct tcataccagt ccaacagaaa acattgttgt
5641 tcaaccacaa aatggcagat gcaccataga tggtgagttg cttggcacca ctcaactgat
5701 cacttccaat atctgttcat tcagaggatc catctcaggg catgaaggca atgatgacca
5761 acacctgtgg cacctcaaca tcacaaaccc caatggcact ccttttgacc ccactgaaga
5821 tgtacctgcc ccccttggaa ccccagattt caggggtcaa ttgtacggtg tcatctccca
5881 gcgagacaga gagggaacac cctcggaaaa caatcagaag gcaaacaggt cccacgaggg
5941 agtgatttca acaatctcac caaaatttgt ccccaagtta ggttcagtca tgattggcac
6001 atggactact gatgatatca aaaaccagcc atccaagttc accccaattg gcctcaatga
6061 tgatgataat tttaaacaat gggaattgcc aaattattct ggggcgctca ctctcaacat
6121 ggggttggca cctagtgttt tccccaccta tcctggtgaa caaatccttt tcttccgctc
6181 ctatctgcca atgaagggag ggtacggtag tccatttatt gactgcctag tacctcaaga
6241 atgggtcgct cacttctacc aggagtcagc acccgcacaa acagatgtgg ccctaatcag
6301 gtatgtaaac cccgaaacag gacgtgtcct tttcgaggcc aaattgcaca gacaggggtt
6361 cattaccgtt gccaagagcg gcgacagccc catcaatgtg cctgccaatg gttattttag
6421 gtttgattct tgggttaacc agttttactc tcttgccccc atgggaactg ggaacgggcg
6481 tagaaggatt cagtaatggc tggagctttt atagcaggat tggctggtga catgctcaca
6541 aacacagtag ggtctctagt taatgcagga gctaatgcta ttaatcagaa aattgatttt
6601 gagaataata aatatttcca aaatgcatca tttgcccatg ataaggatat gctgaaagca
6661 caggttgagg cgaccaggaa acttcaggct gacatgattg ccatcaagca aggagtatta
6721 gtcgcgggcg gcttttcccc tactgatgca gctcggggag caatcaacgc ccccatgaca
6781 aaggccctag attggaatgg aacaaggtac tgggcgccaa atgccacctc caccacttca
6841 atgtcaggtg gcttcacagg acaggtttcg cacgggacca taccaaattt taaaaccaac
6901 caggctccca aacccccacc tagtagtggg tcttcagtaa ggtccaactc aacccaactc
6961 actagtctga gctcccactc ctctgggtca tctcgatcca gcggatcaac agtggttagc
7021 tctttgcctt cttctagcag gactagggat tgggtcaatc aacaaaatct caatttggaa
7081 ccacatttgc ctgggtctct cagaacagtt tttgtcactc caccatctag ttcagcctct
7141 agttcaggca cagtctcaac cgtgcctaag ggtgttttgg actcctggac atctgcattc
7201 aacacacaca gacagccgct ttttgcacac cttcgcagaa ggggggagtc aaatgtttag
7261 tgaaaagatt attttaaatt tgatttaatt ttaaatttga ttggcat
//