Typing tool
|
Complete norovirus genomes
MG548737 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS MG548737 7559 bp ss-RNA linear VRL 30-NOV-2018 DEFINITION Norovirus GII isolate Hu/GII.4/Suncheon/2016, complete genome. ACCESSION MG548737 VERSION MG548737.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Ju,S. TITLE Complete Sequence Anlysis of the Norovirus GII.4 in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 7559) AUTHORS Ju,S. TITLE Direct Submission JOURNAL Submitted (20-NOV-2017) Food Safety Evaluation Department, National Institute of Food and Drug Safety Evaluation, Osong-Bio2, Cheongju, Chungcheongbuk-do KS001, South Korea COMMENT ##Assembly-Data-START## Assembly Method :: CLC genomics v. version 10 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/GII.4/Suncheon/2016" /host="Homo sapiens" /db_xref="taxon:122929" /country="South Korea" /collection_date="22-Apr-2016" /note="genotype: GII.4" CDS 5..5104 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AUF81807.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS FAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGVGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEAANEDGC PKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGGAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUF81808.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGRVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="ORF3; minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUF81809.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS NASTATSIYSNQTVSTRLGSTAGSGTNISSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaagt 241 agtggtttct tatagtgcca aagacggcgt ttccggtttg cctgagcttt ccaccgtcag 301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 ggatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat 481 tagcttcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc atctctcctg acactctcaa gaaattacac ggagaaacat ttccctacac 601 agccttcgac aacaattgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta acatattcct 781 gtgcaccctg tcttcgctat tcaccaggcc cataaaagac ataataggga agttaaggcc 841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtggagct 1021 cgtccctgta gtaatggggg gagttggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catctacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacccttga 1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggttgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct 1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ttggctaacc cagcaccact 1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccccgaggtc gaaaaggcga agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc 1921 ttttagtcct gatttctcac acataaaatt ggcactggct ccacaaggtg gctttgacaa 1981 gaacggaaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctgc tccatgagag attggatgag tttgaactac agggcccagc 2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgcc ttcagacagc ttgctgctga 2161 aaacaaatac gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcaaaac 2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta 2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg 2401 cgccagaatc aggtactatg tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagacttatg 2521 gtccaagcca caagtggaaa acacagagga ggctgccaac gaggacgggt gcccaaagcc 2581 caaagataat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga 2701 tgaagagtat gatgagtaca agagaattag agaggagagg aatggcaagt attccataga 2761 ggagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag 2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aaggaaccca gaagacttca agcctaaggg gaaactatgg gctgacgatg acagaagtgt 3001 ggactacaat gaaaaactca gctttgaggc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccacgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat 3241 gatcttggaa gaaggtgcgc ccgagggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 acgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 cctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggggtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggggtgcccc aaaacttagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aaggatggcc cctctttgca gcaagtcatg agggaccagc tgaaaccatt 3781 tacagagcct aggggtaagc caccaaagcc aagcgtgttg gaagctgcca agaaaaccat 3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgagttagt 4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc 4141 aaccatgatc cggtgtgctc gagcattcgg aggtctaatg gatgaactca aagcacactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagcc gtgctggcag ctgctctaga aatcatggtt aaattctcct cagaaccaca 4381 cttggctcag gtagtagcag aagaccttct ttctcctagc gtgatggatg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtccccaga 4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga 4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac 4681 ccgccctgat aaaactgaag gacctcttgt tatttctgaa gacttggatg gtttgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc 4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaatcaat 4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccaaca ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg 4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggctct ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga 5341 atccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc 5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagtccca gccaggttac tatgttcccc cacataatag 5521 tggatgttag gcaattggaa cctgtattga tccccttacc tgatgttagg aataacttct 5581 accactataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggccaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtt ctcacgaggc 5701 catcccctga ttttgatttt atatttttgg tgccacctac agttgagtca agaactaaac 5761 catttactgt cccaatctta actgttgaag aaatgaccaa ttcaaggttc cccattcctt 5821 tggaaaaatt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggtt ctcgtaatta cacaatgaat ttggcttctc 6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcactc aaaccacaaa gggagatggc tcgacccgtg 6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggcagagttc 6181 agttcagtac tgacacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag 6241 tcggtgtcat ccaggatggt ggcaccaccc accgaaatga accccaacaa tgggtactcc 6301 caagttattc aggtagagat gtccataatg tacacctagc ccctgctgta gcccccactt 6361 ttccgggtga acaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca 6421 acatggattt ggattgcctg ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc 6541 tgtttgagtg caaactccat aaatcaggct atgtcacagt ggctcacacc ggccagcatg 6601 atttggtcat cccccccaat ggttatttta ggtttgattc ctgggttaat caattctata 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttag ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataat agaaaattgc agcaagcttc 6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa cacgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat 6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccctat 7021 gacaaaggct ttggattgga gcggaacaag gtactgggcc cctgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccacccctca accttcgggg gcactgccag gaagaatcaa 7141 tcctaggact cctacccccg ctcggggctc ccccagcaca tcttctaatg cttctactgc 7201 cacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccaatatc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cctttcttta gtgtctttt //