Typing tool
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Typing tool
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Complete norovirus genomes
| MG495085 | GII.24 | |
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| GII.P24 |
ORF1: 1..4863
ORF2: 4844..6472
ORF3: 6472..7204
LOCUS MG495085 7204 bp ss-RNA linear VRL 17-DEC-2017
DEFINITION Norovirus GII strain Hu/US/2013/GII.P24-GII.24/EdenPrairie5458
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MG495085
VERSION MG495085.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7204)
AUTHORS Chhabra,P., Cebelinski,E., Castro,C.J., Marine,R., Ng,T. and
Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7204
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/US/2013/GII.P24-GII.24/EdenPrairie5458"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA"
/collection_date="08-Nov-2013"
/note="genotype: GII.P24-GII.24"
CDS <1..4863
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUD54989.1"
/translation="GEDIVIKYTKQEDTVSGVPSVSTVDISPPHDTAYSVPPLDQREK
VDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAMSIARIELTPLSLYWRTV
YTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRP
YQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDIIGKLKPLNLLNIVANCDWT
FPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIGMV
LGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTIED
AVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINALLA
RIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGL
VPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKVF
DSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAF
KPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGP
ELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKDIRIKPCR
IIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNKLRGARIRYYVKCFQEMIY
SLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPTPPIEDWTITPADTVQEGK
KGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAIA
KATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWA
DDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFGVP
INQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLASRM
GTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHTA
AARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNTPL
PPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVL
EQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLMFE
QGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARAFGGLMEEMKANC
VRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRYVLGAALEIMVRFSAE
PELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMAEVSG
LSPDVIQSNSCFSFYGDDEIVSTDIKLDSQKLTDKLKEYGLIPTRPDKTEGPLIIKES
LEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRPVQLMS
LLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PEGVNEDGVE"
CDS 4844..6472
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54990.1"
/translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ
TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG
VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTLEPILLPLPD
VRNNFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP
TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT
QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF
GVLSQRNRNTDSGQSGPANRSHDAVVSTRDNRFTPKLGSVMIATWETDDIQDQPTRFT
PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH
IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP
INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6472..>7204
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54991.1"
/translation="MAGAFLAGLAGDIATNTMGSLVNAGANAINQKVDFENNKFLQGE
SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSSASSVRSNSTQLTSLGS
HSSGSSRSSGSTVVSSLPSSSRTREWVNSQNLNLEPHLPGSLKTAFVTPPSSAASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFA"
ORIGIN
1 ggtgaggaca tagtaatcaa gtataccaaa caagaggaca cggtcagtgg ggtgcctagc
61 gtttccaccg tagacatatc ccctccacat gacactgcat acagtgtccc ccccctggac
121 caaagggaga aggtggatgc aaaagaaccc ctgactggtt caataataga gatgtgggat
181 ggtgagatct atcattatgg gctctacgta gagaaggggc tagttcttgg cgtgcacaaa
241 cctccagctg ccatgagcat tgcgcgcatc gagctaaccc ctctctctct gtactggaga
301 acagtataca caccccctta cctggttgcc cctgacaccc ttaggaaact tcatggtgaa
361 acctttccct atacagcatt tgacaacaac tgttactcat tctgttgctg ggttttggac
421 ctgaacgatt cctggctcaa cagaaagttt gtgtctcgaa ccacgggctt ctacagaccc
481 taccaagatt ggaacagaaa accaatgcca accatggacg agggaaaact taagaaagtg
541 gccaatgtgt ttctgtgcgg cctgactggg ctgttcacca ggcccatcaa agacatcata
601 ggtaagttga aaccgctgaa tctccttaac atcgttgcca attgcgactg gaccttccct
661 ggtgttgtgg aagcaataat tctcctctca gaactttttg gcatcttttg gacaccacca
721 gatatatctg ctttcgttgc ctccttacta ggtgactacg aaatgcaagg ccctgaagac
781 atcgcaaccg agatcgttcc agtcatcctc ggcggtattg gcatggttct aggcttcacc
841 aaagagaaaa ttggccgact gctgagctct gcggcatcat cccttagagc atgcagagag
901 atcggcaact acgggataga ggtggtaaaa ctggtgatga aatggttctt cccgaccaaa
961 agtgaggtta atgagatgga aatggtcaga acaatagagg atgcagtgct tgactttgag
1021 gcgatagaga acaaccacat gacagctttg ctcaaagaca agaatagtct ggccaccttt
1081 ctcagagcat tagacatgga agaggaaaag gcgcggaaac tgtcaaccaa atccgcctca
1141 cctgacatag tcggcaccat aaacgcactc ttggcgagga tcgccgctgc cagatcccta
1201 gttcacaggg ccaaggaaga gatgtcatct aggatgcgtc cagtcgtcat catgatttct
1261 gggcgacctg ggattgggaa aacacacctg gcacgcgacc tggccaaaaa gatggcggcc
1321 accttatcgg gtgaccagag agtgggcctt gtcccaagaa acggtgtcga tcactgggat
1381 gcatacaaag gggagaggat cgtcctctgg gatgattatg gcatgagcaa ccctgtggca
1441 gatgctctcc ggctccagga acttgccgac acctgcccct tgacactcaa ctgtgacagg
1501 atagagaaca aagggaaggt ctttgacagt gacaccctga ttatcaccac caatctggcc
1561 aatccagctc ctctcgacta tgtaaacttt gaggcctgtt cacgccgcat agacttcctt
1621 gtctacgcag attccccctc agttgacaaa gcaaaaagag acttcccagg ccaaccggac
1681 atgtggaagg acgccttcaa gccagatttc tcacacataa agctacaatt agcaccacaa
1741 ggaggatttg acaagaatgg aaacaccccc catgggaagg gcgtcatgaa aacactgact
1801 acacactccc tcatagcacg cgccactggc ttgcttcatg agaggttgga tgaatttgac
1861 ctgcaaggtc cagagttacc agtgtacaat tttgatcaaa acaaggtggc cgcgttccga
1921 aaactcgcag ctgacaacaa gtatggtttc atggacacct tgagagcagg taacaaactg
1981 aaggaagtca aaaccctgga ccagtttaaa gaagcagtga aggacatacg cataaaacca
2041 tgcaggataa tctacaactc actagcctat gatttggact caaatgggtc aggaaaggtc
2101 aatgtcaaaa aggtggggga ccaacggatc caggccaaca atgagctcaa ctctgcactc
2161 aataaactgc gcggggccag aatcagatac tatgtgaaat gtttccaaga aatgatctac
2221 tcacttctcc aaattgctgg tgcggccttc gtcacgtcta gaatggcgca gaggatgaat
2281 gtcaacaaac tgtgggccaa gccagaaaaa cagtcagaga ccctcacgga accacctacc
2341 cctccaattg aagattggac cataacacca gcagacacag tccaagaggg taagaaaggt
2401 aaaaacaaga gtggcagagg caagaagcac actgcgttct ccagcaaggg tctcagtgat
2461 gaggagtatg atgaatacaa aaggatcagg gaagaacgtc aaggaaagta ctctatagag
2521 gaatacctcc aagacaggga ccggtactat gaagaattgg ctatagccaa agcaacagaa
2581 gagaatttct gtgaagagga agaaatcaaa attaggcaga ggatcttccg cccaaccagg
2641 aagcaacgta aggaggagag ggccacccta ggtcttgtta caggtagtga gataaggaag
2701 aggaaccccg atgacttcaa gccaaaaggt aagctgtggg ccgatgatga ccgcagtgtc
2761 aactacaatg aaagaataga ctttgaagcc ccccctagtc tttggtccag gatagtcaac
2821 ttcgggtcag gatggggttt ttgggtttcc tctaacctgt tcatcacttc cacacatgtc
2881 atcccacaaa acatgtctga agcctttgga gtgccaataa atcagataca aatacacagg
2941 agtggggaat tctgcaaaat gagattcccg aaagccatca gacccgacgt ttctggcatg
3001 atccttgagg agggtgcccc tgaagggaca gttgtgacca tattgatcaa aagaacaact
3061 ggtgaactca tgccattagc atcccgcatg ggcacccatg ccaccatgaa gatacaaggt
3121 agaatgattg gaggccagat ggggatgctt ctcacaggat ccaacgccaa aaacatggac
3181 cttggcaccg tccctggtga ctgtggctgt ccctatgtct acaagagggg caatgactgg
3241 gtcgtcattg gggtgcacac tgccgccgct agaggcggca acacagtgat ctgtgccacc
3301 caggggccag atggtgaagc caccctcgag ggaggtgaca accatgggac gtactgtggt
3361 gcacccatac tagggcctgg aaacgcccca aaactcagta ccaagaccaa attctggaga
3421 tcatccaaca ccccactccc ccctggcaca tacgaacctg cctacctcgg aggtaaagac
3481 ccaagggtca aaggaggccc gtcactacaa caagtcatga gggaacagct taagcccttc
3541 acagccccaa gaggaaaacc gccaagacca gcgatcttgg aggccgcaaa ggaaaccatc
3601 tgtaatgtac tagaacagac cattgaacca ccccaaaagt ggtcctacgc gcaagcctgc
3661 gcgtccctag acaagacaac ttcaagcgga cacccacacc ataaaaagaa aaatgacaat
3721 tggaatggtg aatctttcac tggtgttctg gctgatcagg cgtcaaaggc caacctcatg
3781 tttgagcagg gaaaacacat gcaacctgtg tacacaggag ccctcaaaga tgaacttgtc
3841 aaaaccagta aaatctatga gaacattaag aagaggcttt tatggggatc agacttgggc
3901 acgatgatac gctgtgctag agcatttggt ggtctcatgg aggagatgaa ggcaaactgt
3961 gtgaggttac cagtcagggt tggtatgaac atgaatgagg atgggcccat aatctttgag
4021 aaacattcaa aatacagata ccattatgat gctgactatt ctaggtggga ctcaacacaa
4081 cagagatatg tcttaggtgc tgcccttgaa ataatggtta ggttctcagc cgagccagaa
4141 ttggcacaaa ttgtggctga agatctcttg tcgcccagcg tcatggacgt cggtgacttc
4201 aagattacta taaatgaagg cttgccctcc ggggtcccat gcacgtccca gtggaattca
4261 attgcccatt ggttgttgac attatgtgcc atggcagagg tctcaggatt gtcaccagat
4321 gtgatacagt caaattcctg cttctccttt tacggagacg atgagatagt tagcacagat
4381 atcaaattgg actctcaaaa gttgacagac aagctaaaag agtacggctt gatcccaacc
4441 agacctgaca agacagaggg ccccctaata atcaaagaaa gtttggaggg tttaaccttt
4501 ctgagaaggg atgtgtgtag agatccagtt gggtggtttg gtaagcttga tcagtcttca
4561 atcatgagac aactgtattg gaccaaagga cccaatcatg aagaccctaa tgaaacaatg
4621 ataccacatt ctcaaaggcc tgtgcagctg atgtccctac ttggtgaagc agccctacat
4681 ggaccagctt tctacaaaaa ggtcagcaaa ttggttatca ctgaactcaa agaaggtgga
4741 atggatttct atgtgcccag gcaagagcct atgtttagat ggatgaggtt ctccgatctg
4801 agcacgtggg agggtgatcg caatctagct cccgagggtg tgaatgaaga tggcgtcgaa
4861 tgacgctgct ccatctaatg atggtgctgc caacctcgta ccagaggcca acaaagaggt
4921 tatggcattg gaaccagtgg caggcggggc aatcgccgca cccctcactg gtcaaacaaa
4981 tataattgac ccctggatca tgaataattt tgtgcaagca ccaaatggtg aatttacaat
5041 atctcccaga aattccccag gagaggtgtt gttgaaccta gagttgggac cagacctcaa
5101 ccctttcctt gcccatttgt ctagaatgta taatggatat gcggggggag tggaggtgca
5161 agtgattatg gctggcaacg ctttcaccgc gggaaaagtc atcttcgcag ctgtaccacc
5221 gcacttccca gttgacaacc tcagcccccc tcaggtgact atgtttccac atgttatagt
5281 tgatgttagg actcttgagc caatcctact tccccttcca gatgtgagaa ataacttcta
5341 tcattataat caggtgaatg attcaaggat gaggttgatt gctatgttgt ataccccatt
5401 gagatcaaat ggttcttctg atgatgtttt cactgtatca tgtagagttt tgactaggcc
5461 caccccagac tttgagttca actacctggt cccacctact gttgaatcaa gaacaaaacc
5521 cttcagtgtg cccatcctaa ctattggaga aatgacaaat tcaaggttcc cactgcccat
5581 agacatgctg tacaccagcc caactgaaaa catagtagtt cagccccaaa atggtaggtg
5641 cacgttggaa ggagaactac tgggtacaac ccagttagtg accccgaaca tctgcgcgct
5701 acgtggggag atcagggggc atgaaggcag tggtgacaac cacaaatggc attttatggt
5761 gaggagcccc aatggggcag cttttgaccc aactgaggat gtacccgccc ccctaggcac
5821 ccctgatttc ataggtgatg tgtttggagt cctctcacaa agaaacagaa acactgacag
5881 tggtcagtct ggtcctgcaa acagatcaca tgatgctgtt gtttccacaa gggacaacag
5941 attcactcca aaactaggat ctgtgatgat agccacctgg gagaccgatg acatccaaga
6001 ccagcccacc agattcactc cagtaggcct tgaaaaccct gatcattaca accaatggca
6061 attaccaaat tattcagggg cactaactct aaacatgggg ctggccccat ctgtgtttcc
6121 aacctacccc ggagaacaaa tcctcttctt ccgctcgtac atcccactca agggcggata
6181 tggagattcc cacattgatt gcctggtacc acaggaatgg atccaacatt tctaccaaga
6241 atcagccccc tcacaaactg atgtggcatt aatcaggtat gtgaaccccg aaacaggacg
6301 tgtcctgttc gaggccaaat tgcataggca aggctacata acagttgcaa ggagtggcag
6361 cagccccatc aatgtcccgg ccaatggcta ttttagattc gactcctggg tcaaccaatt
6421 ctattcactc gcccccatgg gaactggaaa cgggcgcaga agaatccaat aatggcagga
6481 gctttcttag caggattggc aggcgatatc gccactaaca ccatggggtc tttggtcaat
6541 gcaggggcta atgcaatcaa tcagaaagtt gattttgaga ataataaatt tctccaaggt
6601 gaatctttta agcatgataa ggaaatgttg aatgcacagg ttgaagccac aaagaaactc
6661 cagatggaca tgattaacat caaacagggg gtcttgactg ctgggggatt ttcccccact
6721 gatgcagccc ggggggccat caacgcaccc atgactaagg tgctggattg gaatgggaca
6781 aggtactggg caccgaatgc caccaccaca acctcaatgt ctggtggctt cactagtcag
6841 gtcgtgcaca ggccaacacc aaattttgga aacaagcaag cccccaggcc tgcgcctagc
6901 agtgcttcat ctgtgagatc aaattctacc caactcacca gtctgggctc ccactcctct
6961 ggatcttcga ggtccagtgg atccaccgtg gtcagctcac tgccctcttc gagtaggact
7021 agggagtggg taaacagtca aaatctcaat ttggaacccc atttgcctgg gtcgctgaag
7081 acagcctttg tcaccccacc atcaagtgct gcttcaagct caggaacagt ctcaactgtg
7141 cctaaaggtg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctcttc
7201 gcac
//