Typing tool
|
Complete norovirus genomes
MG495085 | GII.24 | ||
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GII.P24 |
ORF1: 1..4863 ORF2: 4844..6472 ORF3: 6472..7204LOCUS MG495085 7204 bp ss-RNA linear VRL 17-DEC-2017 DEFINITION Norovirus GII strain Hu/US/2013/GII.P24-GII.24/EdenPrairie5458 nonstructural polyprotein gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION MG495085 VERSION MG495085.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7204) AUTHORS Chhabra,P., Cebelinski,E., Castro,C.J., Marine,R., Ng,T. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7204 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/US/2013/GII.P24-GII.24/EdenPrairie5458" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="USA" /collection_date="08-Nov-2013" /note="genotype: GII.P24-GII.24" CDS <1..4863 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AUD54989.1" /translation="GEDIVIKYTKQEDTVSGVPSVSTVDISPPHDTAYSVPPLDQREK VDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAMSIARIELTPLSLYWRTV YTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRP YQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDIIGKLKPLNLLNIVANCDWT FPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIGMV LGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTIED AVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINALLA RIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGL VPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKVF DSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAF KPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGP ELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKDIRIKPCR IIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNKLRGARIRYYVKCFQEMIY SLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPTPPIEDWTITPADTVQEGK KGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAIA KATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWA DDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFGVP INQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLASRM GTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHTA AARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNTPL PPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVL EQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLMFE QGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARAFGGLMEEMKANC VRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRYVLGAALEIMVRFSAE PELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMAEVSG LSPDVIQSNSCFSFYGDDEIVSTDIKLDSQKLTDKLKEYGLIPTRPDKTEGPLIIKES LEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRPVQLMS LLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA PEGVNEDGVE" CDS 4844..6472 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUD54990.1" /translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTLEPILLPLPD VRNNFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF GVLSQRNRNTDSGQSGPANRSHDAVVSTRDNRFTPKLGSVMIATWETDDIQDQPTRFT PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" CDS 6472..>7204 /note="ORF3; minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUD54991.1" /translation="MAGAFLAGLAGDIATNTMGSLVNAGANAINQKVDFENNKFLQGE SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSSASSVRSNSTQLTSLGS HSSGSSRSSGSTVVSSLPSSSRTREWVNSQNLNLEPHLPGSLKTAFVTPPSSAASSSG TVSTVPKGVLDSWTSAFNTRRQPLFA" ORIGIN 1 ggtgaggaca tagtaatcaa gtataccaaa caagaggaca cggtcagtgg ggtgcctagc 61 gtttccaccg tagacatatc ccctccacat gacactgcat acagtgtccc ccccctggac 121 caaagggaga aggtggatgc aaaagaaccc ctgactggtt caataataga gatgtgggat 181 ggtgagatct atcattatgg gctctacgta gagaaggggc tagttcttgg cgtgcacaaa 241 cctccagctg ccatgagcat tgcgcgcatc gagctaaccc ctctctctct gtactggaga 301 acagtataca caccccctta cctggttgcc cctgacaccc ttaggaaact tcatggtgaa 361 acctttccct atacagcatt tgacaacaac tgttactcat tctgttgctg ggttttggac 421 ctgaacgatt cctggctcaa cagaaagttt gtgtctcgaa ccacgggctt ctacagaccc 481 taccaagatt ggaacagaaa accaatgcca accatggacg agggaaaact taagaaagtg 541 gccaatgtgt ttctgtgcgg cctgactggg ctgttcacca ggcccatcaa agacatcata 601 ggtaagttga aaccgctgaa tctccttaac atcgttgcca attgcgactg gaccttccct 661 ggtgttgtgg aagcaataat tctcctctca gaactttttg gcatcttttg gacaccacca 721 gatatatctg ctttcgttgc ctccttacta ggtgactacg aaatgcaagg ccctgaagac 781 atcgcaaccg agatcgttcc agtcatcctc ggcggtattg gcatggttct aggcttcacc 841 aaagagaaaa ttggccgact gctgagctct gcggcatcat cccttagagc atgcagagag 901 atcggcaact acgggataga ggtggtaaaa ctggtgatga aatggttctt cccgaccaaa 961 agtgaggtta atgagatgga aatggtcaga acaatagagg atgcagtgct tgactttgag 1021 gcgatagaga acaaccacat gacagctttg ctcaaagaca agaatagtct ggccaccttt 1081 ctcagagcat tagacatgga agaggaaaag gcgcggaaac tgtcaaccaa atccgcctca 1141 cctgacatag tcggcaccat aaacgcactc ttggcgagga tcgccgctgc cagatcccta 1201 gttcacaggg ccaaggaaga gatgtcatct aggatgcgtc cagtcgtcat catgatttct 1261 gggcgacctg ggattgggaa aacacacctg gcacgcgacc tggccaaaaa gatggcggcc 1321 accttatcgg gtgaccagag agtgggcctt gtcccaagaa acggtgtcga tcactgggat 1381 gcatacaaag gggagaggat cgtcctctgg gatgattatg gcatgagcaa ccctgtggca 1441 gatgctctcc ggctccagga acttgccgac acctgcccct tgacactcaa ctgtgacagg 1501 atagagaaca aagggaaggt ctttgacagt gacaccctga ttatcaccac caatctggcc 1561 aatccagctc ctctcgacta tgtaaacttt gaggcctgtt cacgccgcat agacttcctt 1621 gtctacgcag attccccctc agttgacaaa gcaaaaagag acttcccagg ccaaccggac 1681 atgtggaagg acgccttcaa gccagatttc tcacacataa agctacaatt agcaccacaa 1741 ggaggatttg acaagaatgg aaacaccccc catgggaagg gcgtcatgaa aacactgact 1801 acacactccc tcatagcacg cgccactggc ttgcttcatg agaggttgga tgaatttgac 1861 ctgcaaggtc cagagttacc agtgtacaat tttgatcaaa acaaggtggc cgcgttccga 1921 aaactcgcag ctgacaacaa gtatggtttc atggacacct tgagagcagg taacaaactg 1981 aaggaagtca aaaccctgga ccagtttaaa gaagcagtga aggacatacg cataaaacca 2041 tgcaggataa tctacaactc actagcctat gatttggact caaatgggtc aggaaaggtc 2101 aatgtcaaaa aggtggggga ccaacggatc caggccaaca atgagctcaa ctctgcactc 2161 aataaactgc gcggggccag aatcagatac tatgtgaaat gtttccaaga aatgatctac 2221 tcacttctcc aaattgctgg tgcggccttc gtcacgtcta gaatggcgca gaggatgaat 2281 gtcaacaaac tgtgggccaa gccagaaaaa cagtcagaga ccctcacgga accacctacc 2341 cctccaattg aagattggac cataacacca gcagacacag tccaagaggg taagaaaggt 2401 aaaaacaaga gtggcagagg caagaagcac actgcgttct ccagcaaggg tctcagtgat 2461 gaggagtatg atgaatacaa aaggatcagg gaagaacgtc aaggaaagta ctctatagag 2521 gaatacctcc aagacaggga ccggtactat gaagaattgg ctatagccaa agcaacagaa 2581 gagaatttct gtgaagagga agaaatcaaa attaggcaga ggatcttccg cccaaccagg 2641 aagcaacgta aggaggagag ggccacccta ggtcttgtta caggtagtga gataaggaag 2701 aggaaccccg atgacttcaa gccaaaaggt aagctgtggg ccgatgatga ccgcagtgtc 2761 aactacaatg aaagaataga ctttgaagcc ccccctagtc tttggtccag gatagtcaac 2821 ttcgggtcag gatggggttt ttgggtttcc tctaacctgt tcatcacttc cacacatgtc 2881 atcccacaaa acatgtctga agcctttgga gtgccaataa atcagataca aatacacagg 2941 agtggggaat tctgcaaaat gagattcccg aaagccatca gacccgacgt ttctggcatg 3001 atccttgagg agggtgcccc tgaagggaca gttgtgacca tattgatcaa aagaacaact 3061 ggtgaactca tgccattagc atcccgcatg ggcacccatg ccaccatgaa gatacaaggt 3121 agaatgattg gaggccagat ggggatgctt ctcacaggat ccaacgccaa aaacatggac 3181 cttggcaccg tccctggtga ctgtggctgt ccctatgtct acaagagggg caatgactgg 3241 gtcgtcattg gggtgcacac tgccgccgct agaggcggca acacagtgat ctgtgccacc 3301 caggggccag atggtgaagc caccctcgag ggaggtgaca accatgggac gtactgtggt 3361 gcacccatac tagggcctgg aaacgcccca aaactcagta ccaagaccaa attctggaga 3421 tcatccaaca ccccactccc ccctggcaca tacgaacctg cctacctcgg aggtaaagac 3481 ccaagggtca aaggaggccc gtcactacaa caagtcatga gggaacagct taagcccttc 3541 acagccccaa gaggaaaacc gccaagacca gcgatcttgg aggccgcaaa ggaaaccatc 3601 tgtaatgtac tagaacagac cattgaacca ccccaaaagt ggtcctacgc gcaagcctgc 3661 gcgtccctag acaagacaac ttcaagcgga cacccacacc ataaaaagaa aaatgacaat 3721 tggaatggtg aatctttcac tggtgttctg gctgatcagg cgtcaaaggc caacctcatg 3781 tttgagcagg gaaaacacat gcaacctgtg tacacaggag ccctcaaaga tgaacttgtc 3841 aaaaccagta aaatctatga gaacattaag aagaggcttt tatggggatc agacttgggc 3901 acgatgatac gctgtgctag agcatttggt ggtctcatgg aggagatgaa ggcaaactgt 3961 gtgaggttac cagtcagggt tggtatgaac atgaatgagg atgggcccat aatctttgag 4021 aaacattcaa aatacagata ccattatgat gctgactatt ctaggtggga ctcaacacaa 4081 cagagatatg tcttaggtgc tgcccttgaa ataatggtta ggttctcagc cgagccagaa 4141 ttggcacaaa ttgtggctga agatctcttg tcgcccagcg tcatggacgt cggtgacttc 4201 aagattacta taaatgaagg cttgccctcc ggggtcccat gcacgtccca gtggaattca 4261 attgcccatt ggttgttgac attatgtgcc atggcagagg tctcaggatt gtcaccagat 4321 gtgatacagt caaattcctg cttctccttt tacggagacg atgagatagt tagcacagat 4381 atcaaattgg actctcaaaa gttgacagac aagctaaaag agtacggctt gatcccaacc 4441 agacctgaca agacagaggg ccccctaata atcaaagaaa gtttggaggg tttaaccttt 4501 ctgagaaggg atgtgtgtag agatccagtt gggtggtttg gtaagcttga tcagtcttca 4561 atcatgagac aactgtattg gaccaaagga cccaatcatg aagaccctaa tgaaacaatg 4621 ataccacatt ctcaaaggcc tgtgcagctg atgtccctac ttggtgaagc agccctacat 4681 ggaccagctt tctacaaaaa ggtcagcaaa ttggttatca ctgaactcaa agaaggtgga 4741 atggatttct atgtgcccag gcaagagcct atgtttagat ggatgaggtt ctccgatctg 4801 agcacgtggg agggtgatcg caatctagct cccgagggtg tgaatgaaga tggcgtcgaa 4861 tgacgctgct ccatctaatg atggtgctgc caacctcgta ccagaggcca acaaagaggt 4921 tatggcattg gaaccagtgg caggcggggc aatcgccgca cccctcactg gtcaaacaaa 4981 tataattgac ccctggatca tgaataattt tgtgcaagca ccaaatggtg aatttacaat 5041 atctcccaga aattccccag gagaggtgtt gttgaaccta gagttgggac cagacctcaa 5101 ccctttcctt gcccatttgt ctagaatgta taatggatat gcggggggag tggaggtgca 5161 agtgattatg gctggcaacg ctttcaccgc gggaaaagtc atcttcgcag ctgtaccacc 5221 gcacttccca gttgacaacc tcagcccccc tcaggtgact atgtttccac atgttatagt 5281 tgatgttagg actcttgagc caatcctact tccccttcca gatgtgagaa ataacttcta 5341 tcattataat caggtgaatg attcaaggat gaggttgatt gctatgttgt ataccccatt 5401 gagatcaaat ggttcttctg atgatgtttt cactgtatca tgtagagttt tgactaggcc 5461 caccccagac tttgagttca actacctggt cccacctact gttgaatcaa gaacaaaacc 5521 cttcagtgtg cccatcctaa ctattggaga aatgacaaat tcaaggttcc cactgcccat 5581 agacatgctg tacaccagcc caactgaaaa catagtagtt cagccccaaa atggtaggtg 5641 cacgttggaa ggagaactac tgggtacaac ccagttagtg accccgaaca tctgcgcgct 5701 acgtggggag atcagggggc atgaaggcag tggtgacaac cacaaatggc attttatggt 5761 gaggagcccc aatggggcag cttttgaccc aactgaggat gtacccgccc ccctaggcac 5821 ccctgatttc ataggtgatg tgtttggagt cctctcacaa agaaacagaa acactgacag 5881 tggtcagtct ggtcctgcaa acagatcaca tgatgctgtt gtttccacaa gggacaacag 5941 attcactcca aaactaggat ctgtgatgat agccacctgg gagaccgatg acatccaaga 6001 ccagcccacc agattcactc cagtaggcct tgaaaaccct gatcattaca accaatggca 6061 attaccaaat tattcagggg cactaactct aaacatgggg ctggccccat ctgtgtttcc 6121 aacctacccc ggagaacaaa tcctcttctt ccgctcgtac atcccactca agggcggata 6181 tggagattcc cacattgatt gcctggtacc acaggaatgg atccaacatt tctaccaaga 6241 atcagccccc tcacaaactg atgtggcatt aatcaggtat gtgaaccccg aaacaggacg 6301 tgtcctgttc gaggccaaat tgcataggca aggctacata acagttgcaa ggagtggcag 6361 cagccccatc aatgtcccgg ccaatggcta ttttagattc gactcctggg tcaaccaatt 6421 ctattcactc gcccccatgg gaactggaaa cgggcgcaga agaatccaat aatggcagga 6481 gctttcttag caggattggc aggcgatatc gccactaaca ccatggggtc tttggtcaat 6541 gcaggggcta atgcaatcaa tcagaaagtt gattttgaga ataataaatt tctccaaggt 6601 gaatctttta agcatgataa ggaaatgttg aatgcacagg ttgaagccac aaagaaactc 6661 cagatggaca tgattaacat caaacagggg gtcttgactg ctgggggatt ttcccccact 6721 gatgcagccc ggggggccat caacgcaccc atgactaagg tgctggattg gaatgggaca 6781 aggtactggg caccgaatgc caccaccaca acctcaatgt ctggtggctt cactagtcag 6841 gtcgtgcaca ggccaacacc aaattttgga aacaagcaag cccccaggcc tgcgcctagc 6901 agtgcttcat ctgtgagatc aaattctacc caactcacca gtctgggctc ccactcctct 6961 ggatcttcga ggtccagtgg atccaccgtg gtcagctcac tgccctcttc gagtaggact 7021 agggagtggg taaacagtca aaatctcaat ttggaacccc atttgcctgg gtcgctgaag 7081 acagcctttg tcaccccacc atcaagtgct gcttcaagct caggaacagt ctcaactgtg 7141 cctaaaggtg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctcttc 7201 gcac //