Typing tool
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Typing tool
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Complete norovirus genomes
| MG495084 | GII.24 | |
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| GII.P24 |
ORF1: 1..4868
ORF2: 4849..6477
ORF3: 6477..7241
LOCUS MG495084 7249 bp ss-RNA linear VRL 17-DEC-2017
DEFINITION Norovirus GII strain Hu/US/2013/GII.P24-GII.24/EdenPrairie5457
nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes,
complete cds.
ACCESSION MG495084
VERSION MG495084.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7249)
AUTHORS Chhabra,P., Cebelinski,E., Castro,C.J., Marine,R., Ng,T. and
Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7249
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/US/2013/GII.P24-GII.24/EdenPrairie5457"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA"
/collection_date="12-Nov-2013"
/note="genotype: GII.P24-GII.24"
CDS <1..4868
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AUD54986.1"
/translation="NGEDIVIKYTKQEDTVSGVPSVSTVDISPPHDTAYSVPPLDQRE
KVDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAMSIARIELTPLSLYWRT
VYTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYR
PYQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDIIGKLKPLNLLNIVANCDW
TFPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIGM
VLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTIE
DAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVG
LVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKV
FDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDA
FKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQG
PELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKDIRIKPC
RIIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNKLRGARIRYYVKCFQEMI
YSLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPTPPIEDWTITPADTVQEG
KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAI
AKATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLW
ADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFGV
PINQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLASR
MGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHT
AAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNV
LEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLMF
EQGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARAFGGLMEEMKAN
CVRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRYVLGAALEIMVRFSA
EPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMAEVS
GLSPDVIQSNSCFSFYGDDEIVSTDIKLDSQKLTDKLKEYGLIPTRPDKTEGPLIIKE
SLEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRPVQLM
SLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APEGVNEDGVE"
CDS 4849..6477
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54987.1"
/translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ
TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG
VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTLEPILLPLPD
VRNNFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP
TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT
QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF
GVLSQRNRNTDSGQSGPANRSHDAVVSTRDNRFTPKLGSVMIATWETDDIQDQPTRFT
PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH
IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP
INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6477..7241
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54988.1"
/translation="MAGAFLAGLAGDIATNTMGSLVNAGANAINQKVDFENNKFLQGE
SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSSASSVRSNSTQLTSLGS
HSSGSSRSSGSTVVSSLPSSSRTREWVNSQNLNLEPHLPGSLKTAFVTPPSSAASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 7241..7249
ORIGIN
1 caaatggtga ggacatagta atcaagtata ccaaacaaga ggacacggtc agtggggtgc
61 ctagcgtttc caccgtagac atatcccctc cacatgacac tgcatacagt gtcccccccc
121 tggaccaaag ggagaaggtg gatgcaaaag aacccctgac tggttcaata atagagatgt
181 gggatggtga gatctatcat tatgggctct acgtagagaa ggggctagtt cttggcgtgc
241 acaaacctcc agctgccatg agcattgcgc gcatcgagct aacccctctc tctctgtact
301 ggagaacagt atacacaccc ccttacctgg ttgcccctga cacccttagg aaacttcatg
361 gtgaaacctt tccctataca gcatttgaca acaactgtta ctcattctgt tgctgggttt
421 tggacctgaa cgattcctgg ctcaacagaa agtttgtgtc tcgaaccacg ggcttctaca
481 gaccctacca agattggaac agaaaaccaa tgccaaccat ggacgaggga aaacttaaga
541 aagtggccaa tgtgtttctg tgcggcctga ctgggctgtt caccaggccc atcaaagaca
601 tcataggtaa gttgaaaccg ctgaatctcc ttaacatcgt tgccaattgc gactggacct
661 tccctggtgt tgtggaagca ataattctcc tctcagaact ttttggcatc ttttggacac
721 caccagatat atctgctttc gttgcctcct tactaggtga ctacgaaatg caaggccctg
781 aagacatcgc aaccgagatc gttccagtca tcctcggcgg tattggcatg gttctaggct
841 tcaccaaaga gaaaattggc cgactgctga gctctgcggc atcatccctt agagcatgca
901 gagagatcgg caactacggg atagaggtgg taaaactggt gatgaaatgg ttcttcccga
961 ccaaaagtga ggttaatgag atggaaatgg tcagaacaat agaggatgca gtgcttgact
1021 ttgaggcgat agagaacaac cacatgacag ctttgctcaa agacaagaat agtctggcca
1081 cctttctcag agcattagac atggaagagg aaaaggcgcg gaaactgtca accaaatccg
1141 cctcacctga catagtcggc accataaacg cactcttggc gaggatcgcc gctgccagat
1201 ccctagttca cagggccaag gaagagatgt catctaggat gcgtccagtc gtcatcatga
1261 tttctgggcg acctgggatt gggaaaacac acctggcacg cgacctggcc aaaaagatgg
1321 cggccacctt atcgggtgac cagagagtgg gccttgtccc aagaaacggt gtcgatcact
1381 gggatgcata caaaggggag aggatcgtcc tctgggatga ttatggcatg agcaaccctg
1441 tggcagatgc tctccggctc caggaacttg ccgacacctg ccccttgaca ctcaactgtg
1501 acaggataga gaacaaaggg aaggtctttg acagtgacac cctgattatc accaccaatc
1561 tggccaatcc agctcctctc gactatgtaa actttgaggc ctgttcacgc cgcatagact
1621 tccttgtcta cgcagattcc ccctcagttg acaaagcaaa aagagacttc ccaggccaac
1681 cggacatgtg gaaggacgcc ttcaagccag atttctcaca cataaagcta caattagcac
1741 cacaaggagg atttgacaag aatggaaaca ccccccatgg gaagggcgtc atgaaaacac
1801 tgactacaca ctccctcata gcacgcgcca ctggcttgct tcatgagagg ttggatgaat
1861 ttgacctgca aggtccagag ttaccagtgt acaattttga tcaaaacaag gtggccgcgt
1921 tccgaaaact cgcagctgac aacaagtatg gtttcatgga caccttgaga gcaggtaaca
1981 aactgaagga agtcaaaacc ctggaccagt ttaaagaagc agtgaaggac atacgcataa
2041 aaccatgcag gataatctac aactcactag cctatgattt ggactcaaat gggtcaggaa
2101 aggtcaatgt caaaaaggtg ggggaccaac ggatccaggc caacaatgag ctcaactctg
2161 cactcaataa actgcgcggg gccagaatca gatactatgt gaaatgtttc caagaaatga
2221 tctactcact tctccaaatt gctggtgcgg ccttcgtcac gtctagaatg gcgcagagga
2281 tgaatgtcaa caaactgtgg gccaagccag aaaaacagtc agagaccctc acggaaccac
2341 ctacccctcc aattgaagat tggaccataa caccagcaga cacagtccaa gagggtaaga
2401 aaggtaaaaa caagagtggc agaggcaaga agcacactgc gttctccagc aagggtctca
2461 gtgatgagga gtatgatgaa tacaaaagga tcagggaaga acgtcaagga aagtactcta
2521 tagaggaata cctccaagac agggaccggt actatgaaga attggctata gccaaagcaa
2581 cagaagagaa tttctgtgaa gaggaagaaa tcaaaattag gcagaggatc ttccgcccaa
2641 ccaggaagca acgtaaggag gagagggcca ccctaggtct tgttacaggt agtgagataa
2701 ggaagaggaa ccccgatgac ttcaagccaa aaggtaagct gtgggccgat gatgaccgca
2761 gtgtcaacta caatgaaaga atagactttg aagccccccc tagtctttgg tccaggatag
2821 tcaacttcgg gtcaggatgg ggtttttggg tttcctctaa cctgttcatc acttccacac
2881 atgtcatccc acaaaacatg tctgaagcct ttggagtgcc aataaatcag atacaaatac
2941 acaggagtgg ggaattctgc aaaatgagat tcccgaaagc catcagaccc gacgtttctg
3001 gcatgatcct tgaggagggt gcccctgaag ggacagttgt gaccatattg atcaaaagaa
3061 caactggtga actcatgcca ttagcatccc gcatgggcac ccatgccacc atgaagatac
3121 aaggtagaat gattggaggc cagatgggga tgcttctcac aggatccaac gccaaaaaca
3181 tggaccttgg caccgtccct ggtgactgtg gctgtcccta tgtctacaag aggggcaatg
3241 actgggtcgt cattggggtg cacactgccg ccgctagagg cggcaacaca gtgatctgtg
3301 ccacccaggg gccagatggt gaagccaccc tcgagggagg tgacaaccat gggacgtact
3361 gtggtgcacc catactaggg cctggaaacg ccccaaaact cagtaccaag accaaattct
3421 ggagatcatc caacacccca ctcccccctg gcacatacga acctgcctac ctcggaggta
3481 aagacccaag ggtcaaagga ggcccgtcac tacaacaagt catgagggaa cagcttaagc
3541 ccttcacagc cccaagagga aaaccgccaa gaccagcgat cttggaggcc gcaaaggaaa
3601 ccatctgtaa tgtactagaa cagaccattg aaccacccca aaagtggtcc tacgcgcaag
3661 cctgcgcgtc cctagacaag acaacttcaa gcggacaccc acaccataaa aagaaaaatg
3721 acaattggaa tggtgaatct ttcactggtg ttctggctga tcaggcgtca aaggccaacc
3781 tcatgtttga gcagggaaaa cacatgcaac ctgtgtacac aggagccctc aaagatgaac
3841 ttgtcaaaac cagtaaaatc tatgagaaca ttaagaagag gcttttatgg ggatcagact
3901 tgggcacgat gatacgctgt gctagagcat ttggtggtct catggaggag atgaaggcaa
3961 actgtgtgag gttaccagtc agggttggta tgaacatgaa tgaggatggg cccataatct
4021 ttgagaaaca ttcaaaatac agataccatt atgatgctga ctattctagg tgggactcaa
4081 cacaacagag atatgtctta ggtgctgccc ttgaaataat ggttaggttc tcagccgagc
4141 cagaattggc acaaattgtg gctgaagatc tcttgtcgcc cagcgtcatg gacgtcggtg
4201 acttcaagat tactataaat gaaggcttgc cctccggggt cccatgcacg tcccagtgga
4261 attcaattgc ccattggttg ttgacattat gtgccatggc agaggtctca ggattgtcac
4321 cagatgtgat acagtcaaat tcctgcttct ccttttacgg agacgatgag atagttagca
4381 cagatatcaa attggactct caaaagttga cagacaagct aaaagagtac ggcttgatcc
4441 caaccagacc tgacaagaca gagggccccc taataatcaa agaaagtttg gagggtttaa
4501 cctttctgag aagggatgtg tgtagagatc cagttgggtg gtttggtaag cttgatcagt
4561 cttcaatcat gagacaactg tattggacca aaggacccaa tcatgaagac cctaatgaaa
4621 caatgatacc acattctcaa aggcctgtgc agctgatgtc cctacttggt gaagcagccc
4681 tacatggacc agctttctac aaaaaggtca gcaaattggt tatcactgaa ctcaaagaag
4741 gtggaatgga tttctatgtg cccaggcaag agcctatgtt tagatggatg aggttctccg
4801 atctgagcac gtgggagggt gatcgcaatc tagctcccga gggtgtgaat gaagatggcg
4861 tcgaatgacg ctgctccatc taatgatggt gctgccaacc tcgtaccaga ggccaacaaa
4921 gaggttatgg cattggaacc agtggcaggc ggggcaatcg ccgcacccct cactggtcaa
4981 acaaatataa ttgacccctg gatcatgaat aattttgtgc aagcaccaaa tggtgaattt
5041 acaatatctc ccagaaattc cccaggagag gtgttgttga acctagagtt gggaccagac
5101 ctcaaccctt tccttgccca tttgtctaga atgtataatg gatatgcggg gggagtggag
5161 gtgcaagtga ttatggctgg caacgctttc accgcgggaa aagtcatctt cgcagctgta
5221 ccaccgcact tcccagttga caacctcagc ccccctcagg tgactatgtt tccacatgtt
5281 atagttgatg ttaggactct tgagccaatc ctacttcccc ttccagatgt gagaaataac
5341 ttctatcatt ataatcaggt gaatgattca aggatgaggt tgattgctat gttgtatacc
5401 ccattgagat caaatggttc ttctgatgat gttttcactg tatcatgtag agttttgact
5461 aggcccaccc cagactttga gttcaactac ctggtcccac ctactgttga atcaagaaca
5521 aaacccttca gtgtgcccat cctaactatt ggagaaatga caaattcaag gttcccactg
5581 cccatagaca tgctgtacac cagcccaact gaaaacatag tagttcagcc ccaaaatggt
5641 aggtgcacgt tggaaggaga actactgggt acaacccagt tagtgacccc gaacatctgc
5701 gcgctacgtg gggagatcag ggggcatgaa ggcagtggtg acaaccacaa atggcatttt
5761 atggtgagga gccccaatgg ggcagctttt gacccaactg aggatgtacc cgccccccta
5821 ggcacccctg atttcatagg tgatgtgttt ggagtcctct cacaaagaaa cagaaacact
5881 gacagtggtc agtctggtcc tgcaaacaga tcacatgatg ctgttgtttc cacaagggac
5941 aacagattca ctccaaaact aggatctgtg atgatagcca cctgggagac cgatgacatc
6001 caagaccagc ccaccagatt cactccagta ggccttgaaa accctgatca ttacaaccaa
6061 tggcaattac caaattattc aggggcacta actctaaaca tggggctggc cccatctgtg
6121 tttccaacct accccggaga acaaatcctc ttcttccgct cgtacatccc actcaagggc
6181 ggatatggag attcccacat tgattgcctg gtaccacagg aatggatcca acatttctac
6241 caagaatcag ccccctcaca aactgatgtg gcattaatca ggtatgtgaa ccccgaaaca
6301 ggacgtgtcc tgttcgaggc caaattgcat aggcaaggct acataacagt tgcaaggagt
6361 ggcagcagcc ccatcaatgt cccggccaat ggctatttta gattcgactc ctgggtcaac
6421 caattctatt cactcgcccc catgggaact ggaaacgggc gcagaagaat ccaataatgg
6481 caggagcttt cttagcagga ttggcaggcg atatcgccac taacaccatg gggtctttgg
6541 tcaatgcagg ggctaatgca atcaatcaga aagttgattt tgagaataat aaatttctcc
6601 aaggtgaatc ttttaagcat gataaggaaa tgttgaatgc acaggttgaa gccacaaaga
6661 aactccagat ggacatgatt aacatcaaac agggggtctt gactgctggg ggattttccc
6721 ccactgatgc agcccggggg gccatcaacg cacccatgac taaggtgctg gattggaatg
6781 ggacaaggta ctgggcaccg aatgccacca ccacaacctc aatgtctggt ggcttcacta
6841 gtcaggtcgt gcacaggcca acaccaaatt ttggaaacaa gcaagccccc aggcctgcgc
6901 ctagcagtgc ttcatctgtg agatcaaatt ctacccaact caccagtctg ggctcccact
6961 cctctggatc ttcgaggtcc agtggatcca ccgtggtcag ctcactgccc tcttcgagta
7021 ggactaggga gtgggtaaac agtcaaaatc tcaatttgga accccatttg cctgggtcgc
7081 tgaagacagc ctttgtcacc ccaccatcaa gtgctgcttc aagctcagga acagtctcaa
7141 ctgtgcctaa aggtgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
7201 tcttcgcaca ccttcgtaga aggggggagt caaatgtcta gtgaaaaga
//