Typing tool
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Typing tool
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Complete norovirus genomes
| MG495083 | GII.25 | |
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| GII.P25 |
ORF1: 1..4861
ORF2: 4842..6467
ORF3: 6467..7200
LOCUS MG495083 7200 bp ss-RNA linear VRL 17-DEC-2017
DEFINITION Norovirus GII strain Hu/BD/2012/GII.P22-GII.25/Dhaka1928
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MG495083
VERSION MG495083.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7200)
AUTHORS Chhabra,P., Ahmed,T., Castro,C.J., Marine,R., Ng,T. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v.8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7200
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/BD/2012/GII.P22-GII.25/Dhaka1928"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Bangladesh"
/collection_date="03-Apr-2012"
/note="genotype: GII.P22-GII.25"
CDS <1..4861
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AUD54983.1"
/translation="GDIIIKYTKQDDVVVGVPTVATVDVPPTHNTAYSVPPLDQREKV
EAKEPLTGSIIEMWDGEIYHYGLYVERGLVLGVHKPPAAISFARIELTPLSLYWRTVY
TPPYLVAPETLRRLHGESFPYNAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPY
QEWNRKPLPTMDEGKLKKVANVLLCGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTF
PGVVEALILLAELFGVFWTPPDISTFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVL
GFTKERIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKDEANEMDMVRAIEDA
VLDFEAIQNNHMTALLKDKNSLATFLRELDMEEEKARKLSTKSASPDIIGTINALLAR
IAAARSLVHKAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGLV
PRNGVDHWDAYKGERIVLWDDYGMSNPVTDALRLQELADTCPLTLNCDRIENKGKVFD
SDTIIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFK
PDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGPE
LPVYNFDQNRVTAFRKLAADNKYGLMETIKVGNKLKGVKTLEQLKDALRDISIKPCRI
IYNSMAYDLDSNGSGRVNVKKVVDHKVQTNNELNSALNNLRGARVRYYVKCVQEMVYS
LLQIAGAAFVTSRMTRRLNVSGIWARPEKQVEAVEEPPAPPPEDWTITPSDAIQEGKK
GKNKSGRGKKHTAFSSKGLSDEEYDEFKRIREERQGKYSIEEYLQDRDRYYEELAIAK
ATEENFCEEEEIKIRQRVFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPRGKLWAD
DDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPI
SQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAARMG
THATMKIQGKMLGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAA
ARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLP
PGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTAPRGKPPRPATLEAAKETICNVLE
QVIEPPQKWSYAQACASLDKTTSSGHPHHMKKNDNWNGESFTGALADQASKANLMFEQ
GKHMQPVYTAALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCV
NLPIRVGMNMNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEP
ELAQIVSEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEVSGL
SPDVVQTNSCFSFYGDDEIVSTDIKLDPLKLTNKLKEYGLIPTRPDKTEGPLIIKESL
EGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGTNHDDPNETMIPHSQRPIQLMSL
LGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAP
EGVNEDGVE"
CDS 4842..6467
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54984.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMALEPVAGGAIAAPLTGQ
TNVIDPWIRTNFVQAPNGEFTISPRNSPGEVLLNMELGPELNPFLGHLSRMYNGYAGG
IEVQVLMAGNAFTAGKVIFAAVPPHFPVENLSPPQVTMFPHIIVDVRTLEPILLPLPD
VRNQFFHYSQVDEPKMRLVAMLYTPLRSNGSAEDVFTVSCRVLTRPSPDFEFNYLVPP
TVESRTKPFTVPILTIGEMSNSRFPAPIDMLYTSPNDNQNVQPQNGRCTLDGELQGTT
QLVPSGVCAFRGRITGHEGSEQNQWHMQLTNLNGTPFDPTEDIPAPLGTPDFKGEIFG
FISQRNAQNDPGQSQPANRAHDAVVSTRAPKFTPKLGSVMIGTWVNSDIENQPSKFTP
VGLNSNENFRQWELPDYSGVLTLNMGLAPVVHPTYPGEQILFFRSYIPLKGGHGNPAI
DCLLPQEWIQHFYQESAPSQTDVALLRYVNPDTGRVLFEAKLHRQGYITIAKSGDGPI
VVPPNGYFRFDSWVNQFYSLAPMGNGNGRRRVQ"
CDS 6467..>7200
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54985.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANSINQKVDFENNKQLQSA
SFAHDKEMLQAQVAATKQLQSDMIAIKYGVLSAGGFSPTDAARGAVNAPMTKVLDWSG
TRYWAPNAATTTMYSGGFIGQPVHRPTPNFTVKDKSAPSSASSTYKSNSTATTRLNSS
SSGSSVSTATTSLPSTTRTAEWVRQQNRSLEPHLPGSLRTAFVTPPSSSASSTGTVST
VPKGVLDSWTPMFNTHRQPLFAYLYK"
ORIGIN
1 tggggacata atcatcaaat acaccaaaca agatgatgtg gttgtagggg tgcccactgt
61 cgctacggtg gatgtccccc caacacacaa caccgcctac agtgtccccc ccttggacca
121 gagggagaag gttgaggcaa aggaacctct gacaggctcg ataattgaga tgtgggatgg
181 tgaaatttat cactatgggc tctatgttga gaggggcttg gttcttggag tgcacaaacc
241 cccagctgcc ataagcttcg cgcgcataga actcaccccc ctctctttat actggagaac
301 agtctacaca ccaccttacc tagtagcccc agaaaccctt agaagactcc acggagagtc
361 gttcccatac aatgcatttg acaacaattg ctactccttc tgttgttggg tcttggactt
421 gaatgattcc tggcttaaca gaaagtttgt ttcgaggacc acaggtttct acagacccta
481 ccaagagtgg aacagaaagc ctctaccaac catggatgag gggaaactca agaaagtggc
541 caatgtgcta ctgtgcggtc tctctggtct tttcactaga ccaatcaagg acctcatagg
601 gaaactaaga ccattaaaca ttctcaacat catcaccaat tgtgattgga ctttccccgg
661 agttgtggaa gctctcatat tacttgcaga actcttcgga gtcttctgga caccaccaga
721 catttccact tttatagcat cacttttggg tgattatgaa atgcagggcc ctgaggacat
781 cgcagttgaa gttgtgccag taattctcgg tggcataggc atggtactcg ggttcaccaa
841 agagagaatc ggccggttgc tgagctctgc cgcttcttca cttagggcgt gcagagagat
901 cggtaattac ggaatagaag tggtgaagtt ggtgatgaaa tggtttttcc ccaccaaaga
961 tgaggcaaac gagatggaca tggtgagggc aatagaggat gccgtgctcg actttgaggc
1021 catacaaaat aatcacatga cagcattact caaagacaaa aacagcctgg caaccttcct
1081 tagggagttg gacatggaag aggagaaagc gcggaagtta tcaacaaagt ccgcgtcccc
1141 agacatcatt ggcaccataa acgcccttct agccaggatt gccgccgcca ggtccctagt
1201 ccacaaggcc aaagaagaaa tgtcatctag gatgcgtcct gttgtcatca tgatctctgg
1261 ccgacccggg ataggaaaga cacatctggc ccgcgacctg gccaagaaga tggcggcgac
1321 cctctcaggt gaccagaggg taggactcgt gccgaggaac ggtgttgatc actgggatgc
1381 atacaaaggg gagagaattg tgctctggga tgactatgga atgagcaatc ctgtgaccga
1441 cgcgttgcgg ctccaagaac ttgccgacac gtgtcccttg acgctcaact gtgataggat
1501 agaaaacaag gggaaagtgt ttgacagtga caccataatt atcaccacca atttggccaa
1561 tcctgcccct ctagattatg ttaattttga agcttgctct cgtcgaatcg atttccttgt
1621 ctatgcagac tccccctcgg tggacaaggc gaagagggac ttccccggcc aaccagacat
1681 gtggaaggat gcctttaaac cagatttctc ccacataaaa cttcaactgg caccacaagg
1741 gggctttgat aagaacggaa atacccccca tgggaagggt gtcatgaaaa cactgaccac
1801 acattccctt attgcccgcg ccacgggtct gttgcatgag aggttggatg agttcgacct
1861 acagggacct gaactgcctg tgtacaattt tgaccaaaac agggtgaccg ctttcagaaa
1921 gcttgcagct gataacaagt acgggctcat ggagaccata aaagtgggca acaaactgaa
1981 aggtgtcaag actctggaac aactcaagga tgccttaaga gacataagca tcaagccttg
2041 cagaataatc tacaactcta tggcttatga tcttgactcg aacgggtcag ggagggttaa
2101 cgtcaaaaag gttgtagatc ataaggtcca aactaacaat gaactcaact ccgcgctcaa
2161 caacctgcgc ggcgctaggg taagatacta tgtcaagtgt gttcaagaga tggtgtactc
2221 tctcctccag atcgctggcg cggccttcgt cacttcaagg atgacgcgaa ggttaaacgt
2281 cagtggtatc tgggccaggc cagaaaaaca ggtggaggcc gttgaagaac ccccagcccc
2341 cccacctgaa gattggacta taaccccatc agatgcaatt caagaaggta aaaagggcaa
2401 gaacaaaagt ggcaggggta agaaacacac tgccttctcc agcaaaggcc tgagtgatga
2461 ggagtatgat gagtttaaaa ggatcaggga agagaggcaa ggaaaatact ccatagaaga
2521 atacctccaa gacagagacc ggtactatga ggaattggcc atagccaaag caacagaaga
2581 gaatttctgt gaggaggaag aaataaaaat tagacagagg gtctttcgcc caaccagaaa
2641 acagcgcagg gaggaaaggg caaccctggg attggtcacg ggtagtgaaa tcaggaaaag
2701 gaacccagac gacttcaaac caagaggaaa attgtgggct gatgatgacc gcagtgtaaa
2761 ttacaatgag aaaatagatt ttgaggcccc tcctagcctt tggtcccgaa tagtgaactt
2821 tgggtcaggc tggggtttct gggtgtcttc taacctgtta atcacatcaa cacacgtcat
2881 ccccccgaac atgactgagg cttttggtgt accaataagc cagatacaaa tacacagaag
2941 tggagagttc tgcaaaatga ggtttcccaa ggctataaga cctgatgtct cgggcatgat
3001 cctagaggaa ggagcccctg aagggacggt ggtgaccata ctgattaaga gaaccactgg
3061 tgagctcatg ccgttggccg ctcgaatggg cacccacgcc accatgaaga tacaagggaa
3121 aatgcttgga ggccaaatgg gcatgctcct cacggggtcc aacgccaaga acatggacct
3181 cggcaccatc cctggggact gtggttgtcc ctatgtgtac aagaggggta atgattgggt
3241 ggtcataggt gtgcacaccg cagctgccag aggtggcaac accgtaatct gcgccaccca
3301 ggggccagat ggtgaggcca cactcgaggg aggggacaac cacgggacct actgtggtgc
3361 accaatactt ggaccaggaa atgcaccaaa actcagcacc aaaaccaagt tctggaggtc
3421 atccaatgcc ccactcccgc ctggcactta tgagcctgcc tacctaggag gaaaagatcc
3481 aagggtcaag gggggtccgt cattacaaca ggttatgagg gatcagctca aacctttcac
3541 cgccccccga gggaaaccac cgcggccagc aaccttagag gctgccaaag agaccatttg
3601 caatgtgctt gagcaggtca ttgaaccacc ccaaaaatgg tcttacgctc aggcctgtgc
3661 ctcattggat aagacaacat ctagtggtca cccccaccac atgaaaaaga atgacaattg
3721 gaacggagag tcttttactg gtgcactagc tgatcaggcc tctaaggcaa accttatgtt
3781 tgaacaagga aaacacatgc aacccgtgta tactgctgct ctcaaagatg aactcgttaa
3841 gactagtaag atctatgaaa acattaagaa aagacttcta tggggatcag atctgggcac
3901 gatgatccgt tgtgctaggg catttggtgg cctcatggat gagatgaagg caaattgtgt
3961 gaatttacca attagagttg gcatgaacat gaatgaagat gggcccatca tatttgagaa
4021 acattcaaaa tataagtatc actatgatgc cgactattcc aggtgggact caacccaaca
4081 gagacacatt cttggggctg cccttgaaat aatggtcaga ttctcagctg aacctgaatt
4141 ggcacaaatc gtgtctgaag atctcttagc ccctagtgtg gtggatgttg gcgacttcaa
4201 aattaccata aatgaaggat tgccctctgg agtgccgtgc acatcacaat ggaattcaat
4261 ttcccactgg ctcataacac tatgtgccat atcagaagtt tcagggctgt cgccagacgt
4321 ggtacagaca aactcctgct tctccttcta cggggatgat gagatagtca gcactgatat
4381 caagttggac cccttgaagc tgaccaacaa gttaaaagag tatggactga ttccaacaag
4441 accagataag acagagggac cgctcataat taaagagagc cttgagggtc taactttcct
4501 gaggagggac gtgtgtcgag acccagctgg ttggtacgga aagcttgatc aatcttcaat
4561 tatgagacaa ctgtattgga ctaagggaac caaccatgat gatcccaatg agacaatgat
4621 cccacactct cagagaccca tacaattaat gtcattgctg ggggaggcgg cactgcatgg
4681 tccagctttt tacaagaaag tcagcaaact agtcatcact gagctcaagg agggtgggat
4741 ggatttctat gtaccaagac aggaacctat gttcagatgg atgagattct cagacctcag
4801 tacttgggag ggcgatcgca atcttgctcc cgagggtgtg aatgaagatg gcgtcgaatg
4861 acgctgctcc atctaatgat ggtgccgccg gcctcgtacc agagatcaac aatgaggtca
4921 tggcattgga accagtagct gggggagcta tcgcagcccc gctcactgga caaacaaatg
4981 taattgatcc ctggataaga actaattttg tacaagcccc aaatggtgag ttcaccattt
5041 ctcccagaaa ttccccagga gaagttttat tgaacatgga attgggccct gagttaaacc
5101 ccttcttagg acatttatct agaatgtata atggttatgc tggtgggatt gaagtccaag
5161 ttttgatggc gggaaacgcc ttcacggcag gtaaggtcat ctttgcagct gttccacctc
5221 atttccctgt tgaaaatttg agtcccccac aagtgactat gttccctcat ataattgtag
5281 atgttaggac cttggaacca atcctgttgc cccttcccga tgtgagaaac caattctttc
5341 actacagtca ggtggacgaa cccaagatgc ggttggtggc catgctctac acaccgttga
5401 gatctaacgg gtctgcagaa gatgtcttca cagtgtcttg cagagtgttg accaggccat
5461 caccagattt tgaattcaat tatttggtac caccaactgt agaatcaaga accaagcctt
5521 ttactgtacc catcctaacc attggggaaa tgtcaaattc acgcttccct gcccctatag
5581 atatgctcta cacaagcccc aatgataacc agaatgtgca gccacaaaat ggcagatgca
5641 ccctagatgg ggaactgcaa ggcaccaccc aactggtccc atcaggtgta tgtgcgttca
5701 ggggcagaat cacgggccac gagggatcag agcaaaacca gtggcacatg caactgacca
5761 acctcaacgg gacaccattt gacccaacgg aagacatccc cgcacccctt ggcacccctg
5821 acttcaaagg agaaatattt ggattcatat cacaaagaaa tgcacaaaat gacccagggc
5881 aaagccaacc agccaacagg gcacacgatg cggtggtatc tactagggca ccaaaattca
5941 ctccaaaatt ggggtcggtg atgattggca catgggtgaa ctctgacatt gagaaccaac
6001 cctcaaaatt caccccagtt gggctaaata gcaatgaaaa tttcagacag tgggaactac
6061 cagattactc aggagtgcta acccttaaca tgggattggc gcccgttgtc cacccaacct
6121 accccggtga gcaaatccta ttctttaggt catatatccc actaaaaggt ggtcatggca
6181 accccgccat agactgtctc ctcccccagg agtggatcca gcacttctac caggagtctg
6241 cgccctccca gactgatgtt gccttactta ggtatgtgaa ccccgataca ggacgagtcc
6301 tgttcgaggc caaattgcac agacagggat acatcaccat tgcaaaatca ggggatggac
6361 caattgttgt gcccccaaat ggatatttta ggtttgattc ttgggtgaac cagttctatt
6421 ctcttgcccc catgggaaac ggaaatgggc gtagaagggt tcaataatgg caggagcatt
6481 catagcagga ttggcaggtg acatagtcac aaatgggata gggtctttgg tcaatgcagg
6541 ggctaattca attaatcaga aagttgattt tgaaaacaat aagcaacttc aatcagcttc
6601 ttttgctcat gacaaagaga tgctccaggc acaagtggct gcgaccaagc agctccaatc
6661 tgacatgatt gccatcaagt acggtgtgct atccgctggc gggttctcac ccactgatgc
6721 agcaagaggc gcggtcaacg cacccatgac aaaagtcttg gactggagtg gaaccagata
6781 ctgggcacct aatgcggcca caacgaccat gtactccggc gggttcattg gtcagccggt
6841 gcataggcca acaccaaatt ttacagtgaa ggataaatct gcacccagtt ctgcttcatc
6901 cacgtacaag tccaactcca cagcaacgac cagactaaat tccagctctt cagggtccag
6961 tgtctccaca gccaccacct cactcccatc caccaccagg acggccgagt gggtgagaca
7021 acaaaacagg tcactggaac cccacctacc tggttcgctg aggacagctt ttgtcactcc
7081 accatcaagt tcagcttcta gtacaggcac agtctcaacc gtgcctaaag gtgttttgga
7141 ctcctggacg cctatgttca acacgcatag gcagccgctc tttgcatacc tctataagag
//