Typing tool
|
Complete norovirus genomes
MG495083 | GII.25 | ||
---|---|---|---|
GII.P25 |
ORF1: 1..4861 ORF2: 4842..6467 ORF3: 6467..7200LOCUS MG495083 7200 bp ss-RNA linear VRL 17-DEC-2017 DEFINITION Norovirus GII strain Hu/BD/2012/GII.P22-GII.25/Dhaka1928 nonstructural polyprotein gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION MG495083 VERSION MG495083.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7200) AUTHORS Chhabra,P., Ahmed,T., Castro,C.J., Marine,R., Ng,T. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7200 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/BD/2012/GII.P22-GII.25/Dhaka1928" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Bangladesh" /collection_date="03-Apr-2012" /note="genotype: GII.P22-GII.25" CDS <1..4861 /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AUD54983.1" /translation="GDIIIKYTKQDDVVVGVPTVATVDVPPTHNTAYSVPPLDQREKV EAKEPLTGSIIEMWDGEIYHYGLYVERGLVLGVHKPPAAISFARIELTPLSLYWRTVY TPPYLVAPETLRRLHGESFPYNAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPY QEWNRKPLPTMDEGKLKKVANVLLCGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTF PGVVEALILLAELFGVFWTPPDISTFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVL GFTKERIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKDEANEMDMVRAIEDA VLDFEAIQNNHMTALLKDKNSLATFLRELDMEEEKARKLSTKSASPDIIGTINALLAR IAAARSLVHKAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGLV PRNGVDHWDAYKGERIVLWDDYGMSNPVTDALRLQELADTCPLTLNCDRIENKGKVFD SDTIIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFK PDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGPE LPVYNFDQNRVTAFRKLAADNKYGLMETIKVGNKLKGVKTLEQLKDALRDISIKPCRI IYNSMAYDLDSNGSGRVNVKKVVDHKVQTNNELNSALNNLRGARVRYYVKCVQEMVYS LLQIAGAAFVTSRMTRRLNVSGIWARPEKQVEAVEEPPAPPPEDWTITPSDAIQEGKK GKNKSGRGKKHTAFSSKGLSDEEYDEFKRIREERQGKYSIEEYLQDRDRYYEELAIAK ATEENFCEEEEIKIRQRVFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPRGKLWAD DDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPI SQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAARMG THATMKIQGKMLGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAA ARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLP PGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTAPRGKPPRPATLEAAKETICNVLE QVIEPPQKWSYAQACASLDKTTSSGHPHHMKKNDNWNGESFTGALADQASKANLMFEQ GKHMQPVYTAALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCV NLPIRVGMNMNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEP ELAQIVSEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEVSGL SPDVVQTNSCFSFYGDDEIVSTDIKLDPLKLTNKLKEYGLIPTRPDKTEGPLIIKESL EGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGTNHDDPNETMIPHSQRPIQLMSL LGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAP EGVNEDGVE" CDS 4842..6467 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUD54984.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMALEPVAGGAIAAPLTGQ TNVIDPWIRTNFVQAPNGEFTISPRNSPGEVLLNMELGPELNPFLGHLSRMYNGYAGG IEVQVLMAGNAFTAGKVIFAAVPPHFPVENLSPPQVTMFPHIIVDVRTLEPILLPLPD VRNQFFHYSQVDEPKMRLVAMLYTPLRSNGSAEDVFTVSCRVLTRPSPDFEFNYLVPP TVESRTKPFTVPILTIGEMSNSRFPAPIDMLYTSPNDNQNVQPQNGRCTLDGELQGTT QLVPSGVCAFRGRITGHEGSEQNQWHMQLTNLNGTPFDPTEDIPAPLGTPDFKGEIFG FISQRNAQNDPGQSQPANRAHDAVVSTRAPKFTPKLGSVMIGTWVNSDIENQPSKFTP VGLNSNENFRQWELPDYSGVLTLNMGLAPVVHPTYPGEQILFFRSYIPLKGGHGNPAI DCLLPQEWIQHFYQESAPSQTDVALLRYVNPDTGRVLFEAKLHRQGYITIAKSGDGPI VVPPNGYFRFDSWVNQFYSLAPMGNGNGRRRVQ" CDS 6467..>7200 /note="ORF3; minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUD54985.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANSINQKVDFENNKQLQSA SFAHDKEMLQAQVAATKQLQSDMIAIKYGVLSAGGFSPTDAARGAVNAPMTKVLDWSG TRYWAPNAATTTMYSGGFIGQPVHRPTPNFTVKDKSAPSSASSTYKSNSTATTRLNSS SSGSSVSTATTSLPSTTRTAEWVRQQNRSLEPHLPGSLRTAFVTPPSSSASSTGTVST VPKGVLDSWTPMFNTHRQPLFAYLYK" ORIGIN 1 tggggacata atcatcaaat acaccaaaca agatgatgtg gttgtagggg tgcccactgt 61 cgctacggtg gatgtccccc caacacacaa caccgcctac agtgtccccc ccttggacca 121 gagggagaag gttgaggcaa aggaacctct gacaggctcg ataattgaga tgtgggatgg 181 tgaaatttat cactatgggc tctatgttga gaggggcttg gttcttggag tgcacaaacc 241 cccagctgcc ataagcttcg cgcgcataga actcaccccc ctctctttat actggagaac 301 agtctacaca ccaccttacc tagtagcccc agaaaccctt agaagactcc acggagagtc 361 gttcccatac aatgcatttg acaacaattg ctactccttc tgttgttggg tcttggactt 421 gaatgattcc tggcttaaca gaaagtttgt ttcgaggacc acaggtttct acagacccta 481 ccaagagtgg aacagaaagc ctctaccaac catggatgag gggaaactca agaaagtggc 541 caatgtgcta ctgtgcggtc tctctggtct tttcactaga ccaatcaagg acctcatagg 601 gaaactaaga ccattaaaca ttctcaacat catcaccaat tgtgattgga ctttccccgg 661 agttgtggaa gctctcatat tacttgcaga actcttcgga gtcttctgga caccaccaga 721 catttccact tttatagcat cacttttggg tgattatgaa atgcagggcc ctgaggacat 781 cgcagttgaa gttgtgccag taattctcgg tggcataggc atggtactcg ggttcaccaa 841 agagagaatc ggccggttgc tgagctctgc cgcttcttca cttagggcgt gcagagagat 901 cggtaattac ggaatagaag tggtgaagtt ggtgatgaaa tggtttttcc ccaccaaaga 961 tgaggcaaac gagatggaca tggtgagggc aatagaggat gccgtgctcg actttgaggc 1021 catacaaaat aatcacatga cagcattact caaagacaaa aacagcctgg caaccttcct 1081 tagggagttg gacatggaag aggagaaagc gcggaagtta tcaacaaagt ccgcgtcccc 1141 agacatcatt ggcaccataa acgcccttct agccaggatt gccgccgcca ggtccctagt 1201 ccacaaggcc aaagaagaaa tgtcatctag gatgcgtcct gttgtcatca tgatctctgg 1261 ccgacccggg ataggaaaga cacatctggc ccgcgacctg gccaagaaga tggcggcgac 1321 cctctcaggt gaccagaggg taggactcgt gccgaggaac ggtgttgatc actgggatgc 1381 atacaaaggg gagagaattg tgctctggga tgactatgga atgagcaatc ctgtgaccga 1441 cgcgttgcgg ctccaagaac ttgccgacac gtgtcccttg acgctcaact gtgataggat 1501 agaaaacaag gggaaagtgt ttgacagtga caccataatt atcaccacca atttggccaa 1561 tcctgcccct ctagattatg ttaattttga agcttgctct cgtcgaatcg atttccttgt 1621 ctatgcagac tccccctcgg tggacaaggc gaagagggac ttccccggcc aaccagacat 1681 gtggaaggat gcctttaaac cagatttctc ccacataaaa cttcaactgg caccacaagg 1741 gggctttgat aagaacggaa atacccccca tgggaagggt gtcatgaaaa cactgaccac 1801 acattccctt attgcccgcg ccacgggtct gttgcatgag aggttggatg agttcgacct 1861 acagggacct gaactgcctg tgtacaattt tgaccaaaac agggtgaccg ctttcagaaa 1921 gcttgcagct gataacaagt acgggctcat ggagaccata aaagtgggca acaaactgaa 1981 aggtgtcaag actctggaac aactcaagga tgccttaaga gacataagca tcaagccttg 2041 cagaataatc tacaactcta tggcttatga tcttgactcg aacgggtcag ggagggttaa 2101 cgtcaaaaag gttgtagatc ataaggtcca aactaacaat gaactcaact ccgcgctcaa 2161 caacctgcgc ggcgctaggg taagatacta tgtcaagtgt gttcaagaga tggtgtactc 2221 tctcctccag atcgctggcg cggccttcgt cacttcaagg atgacgcgaa ggttaaacgt 2281 cagtggtatc tgggccaggc cagaaaaaca ggtggaggcc gttgaagaac ccccagcccc 2341 cccacctgaa gattggacta taaccccatc agatgcaatt caagaaggta aaaagggcaa 2401 gaacaaaagt ggcaggggta agaaacacac tgccttctcc agcaaaggcc tgagtgatga 2461 ggagtatgat gagtttaaaa ggatcaggga agagaggcaa ggaaaatact ccatagaaga 2521 atacctccaa gacagagacc ggtactatga ggaattggcc atagccaaag caacagaaga 2581 gaatttctgt gaggaggaag aaataaaaat tagacagagg gtctttcgcc caaccagaaa 2641 acagcgcagg gaggaaaggg caaccctggg attggtcacg ggtagtgaaa tcaggaaaag 2701 gaacccagac gacttcaaac caagaggaaa attgtgggct gatgatgacc gcagtgtaaa 2761 ttacaatgag aaaatagatt ttgaggcccc tcctagcctt tggtcccgaa tagtgaactt 2821 tgggtcaggc tggggtttct gggtgtcttc taacctgtta atcacatcaa cacacgtcat 2881 ccccccgaac atgactgagg cttttggtgt accaataagc cagatacaaa tacacagaag 2941 tggagagttc tgcaaaatga ggtttcccaa ggctataaga cctgatgtct cgggcatgat 3001 cctagaggaa ggagcccctg aagggacggt ggtgaccata ctgattaaga gaaccactgg 3061 tgagctcatg ccgttggccg ctcgaatggg cacccacgcc accatgaaga tacaagggaa 3121 aatgcttgga ggccaaatgg gcatgctcct cacggggtcc aacgccaaga acatggacct 3181 cggcaccatc cctggggact gtggttgtcc ctatgtgtac aagaggggta atgattgggt 3241 ggtcataggt gtgcacaccg cagctgccag aggtggcaac accgtaatct gcgccaccca 3301 ggggccagat ggtgaggcca cactcgaggg aggggacaac cacgggacct actgtggtgc 3361 accaatactt ggaccaggaa atgcaccaaa actcagcacc aaaaccaagt tctggaggtc 3421 atccaatgcc ccactcccgc ctggcactta tgagcctgcc tacctaggag gaaaagatcc 3481 aagggtcaag gggggtccgt cattacaaca ggttatgagg gatcagctca aacctttcac 3541 cgccccccga gggaaaccac cgcggccagc aaccttagag gctgccaaag agaccatttg 3601 caatgtgctt gagcaggtca ttgaaccacc ccaaaaatgg tcttacgctc aggcctgtgc 3661 ctcattggat aagacaacat ctagtggtca cccccaccac atgaaaaaga atgacaattg 3721 gaacggagag tcttttactg gtgcactagc tgatcaggcc tctaaggcaa accttatgtt 3781 tgaacaagga aaacacatgc aacccgtgta tactgctgct ctcaaagatg aactcgttaa 3841 gactagtaag atctatgaaa acattaagaa aagacttcta tggggatcag atctgggcac 3901 gatgatccgt tgtgctaggg catttggtgg cctcatggat gagatgaagg caaattgtgt 3961 gaatttacca attagagttg gcatgaacat gaatgaagat gggcccatca tatttgagaa 4021 acattcaaaa tataagtatc actatgatgc cgactattcc aggtgggact caacccaaca 4081 gagacacatt cttggggctg cccttgaaat aatggtcaga ttctcagctg aacctgaatt 4141 ggcacaaatc gtgtctgaag atctcttagc ccctagtgtg gtggatgttg gcgacttcaa 4201 aattaccata aatgaaggat tgccctctgg agtgccgtgc acatcacaat ggaattcaat 4261 ttcccactgg ctcataacac tatgtgccat atcagaagtt tcagggctgt cgccagacgt 4321 ggtacagaca aactcctgct tctccttcta cggggatgat gagatagtca gcactgatat 4381 caagttggac cccttgaagc tgaccaacaa gttaaaagag tatggactga ttccaacaag 4441 accagataag acagagggac cgctcataat taaagagagc cttgagggtc taactttcct 4501 gaggagggac gtgtgtcgag acccagctgg ttggtacgga aagcttgatc aatcttcaat 4561 tatgagacaa ctgtattgga ctaagggaac caaccatgat gatcccaatg agacaatgat 4621 cccacactct cagagaccca tacaattaat gtcattgctg ggggaggcgg cactgcatgg 4681 tccagctttt tacaagaaag tcagcaaact agtcatcact gagctcaagg agggtgggat 4741 ggatttctat gtaccaagac aggaacctat gttcagatgg atgagattct cagacctcag 4801 tacttgggag ggcgatcgca atcttgctcc cgagggtgtg aatgaagatg gcgtcgaatg 4861 acgctgctcc atctaatgat ggtgccgccg gcctcgtacc agagatcaac aatgaggtca 4921 tggcattgga accagtagct gggggagcta tcgcagcccc gctcactgga caaacaaatg 4981 taattgatcc ctggataaga actaattttg tacaagcccc aaatggtgag ttcaccattt 5041 ctcccagaaa ttccccagga gaagttttat tgaacatgga attgggccct gagttaaacc 5101 ccttcttagg acatttatct agaatgtata atggttatgc tggtgggatt gaagtccaag 5161 ttttgatggc gggaaacgcc ttcacggcag gtaaggtcat ctttgcagct gttccacctc 5221 atttccctgt tgaaaatttg agtcccccac aagtgactat gttccctcat ataattgtag 5281 atgttaggac cttggaacca atcctgttgc cccttcccga tgtgagaaac caattctttc 5341 actacagtca ggtggacgaa cccaagatgc ggttggtggc catgctctac acaccgttga 5401 gatctaacgg gtctgcagaa gatgtcttca cagtgtcttg cagagtgttg accaggccat 5461 caccagattt tgaattcaat tatttggtac caccaactgt agaatcaaga accaagcctt 5521 ttactgtacc catcctaacc attggggaaa tgtcaaattc acgcttccct gcccctatag 5581 atatgctcta cacaagcccc aatgataacc agaatgtgca gccacaaaat ggcagatgca 5641 ccctagatgg ggaactgcaa ggcaccaccc aactggtccc atcaggtgta tgtgcgttca 5701 ggggcagaat cacgggccac gagggatcag agcaaaacca gtggcacatg caactgacca 5761 acctcaacgg gacaccattt gacccaacgg aagacatccc cgcacccctt ggcacccctg 5821 acttcaaagg agaaatattt ggattcatat cacaaagaaa tgcacaaaat gacccagggc 5881 aaagccaacc agccaacagg gcacacgatg cggtggtatc tactagggca ccaaaattca 5941 ctccaaaatt ggggtcggtg atgattggca catgggtgaa ctctgacatt gagaaccaac 6001 cctcaaaatt caccccagtt gggctaaata gcaatgaaaa tttcagacag tgggaactac 6061 cagattactc aggagtgcta acccttaaca tgggattggc gcccgttgtc cacccaacct 6121 accccggtga gcaaatccta ttctttaggt catatatccc actaaaaggt ggtcatggca 6181 accccgccat agactgtctc ctcccccagg agtggatcca gcacttctac caggagtctg 6241 cgccctccca gactgatgtt gccttactta ggtatgtgaa ccccgataca ggacgagtcc 6301 tgttcgaggc caaattgcac agacagggat acatcaccat tgcaaaatca ggggatggac 6361 caattgttgt gcccccaaat ggatatttta ggtttgattc ttgggtgaac cagttctatt 6421 ctcttgcccc catgggaaac ggaaatgggc gtagaagggt tcaataatgg caggagcatt 6481 catagcagga ttggcaggtg acatagtcac aaatgggata gggtctttgg tcaatgcagg 6541 ggctaattca attaatcaga aagttgattt tgaaaacaat aagcaacttc aatcagcttc 6601 ttttgctcat gacaaagaga tgctccaggc acaagtggct gcgaccaagc agctccaatc 6661 tgacatgatt gccatcaagt acggtgtgct atccgctggc gggttctcac ccactgatgc 6721 agcaagaggc gcggtcaacg cacccatgac aaaagtcttg gactggagtg gaaccagata 6781 ctgggcacct aatgcggcca caacgaccat gtactccggc gggttcattg gtcagccggt 6841 gcataggcca acaccaaatt ttacagtgaa ggataaatct gcacccagtt ctgcttcatc 6901 cacgtacaag tccaactcca cagcaacgac cagactaaat tccagctctt cagggtccag 6961 tgtctccaca gccaccacct cactcccatc caccaccagg acggccgagt gggtgagaca 7021 acaaaacagg tcactggaac cccacctacc tggttcgctg aggacagctt ttgtcactcc 7081 accatcaagt tcagcttcta gtacaggcac agtctcaacc gtgcctaaag gtgttttgga 7141 ctcctggacg cctatgttca acacgcatag gcagccgctc tttgcatacc tctataagag //