Typing tool
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Typing tool
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Complete norovirus genomes
| MG495082 | GII.22 | |
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| GII.PNA5 |
ORF1: 1..4806
ORF2: 4787..6412
ORF3: 6412..7139
LOCUS MG495082 7139 bp ss-RNA linear VRL 17-DEC-2017
DEFINITION Norovirus GII strain Hu/BD/2012/GII.P22-GII.22/Dhaka1940
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MG495082
VERSION MG495082.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7139)
AUTHORS Chhabra,P., Ahmed,T., Castro,C.J., Marine,R., Ng,T. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v.8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7139
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/BD/2012/GII.P22-GII.22/Dhaka1940"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Bangladesh"
/collection_date="31-Oct-2012"
/note="genotype: GII.P22-GII.22"
CDS <1..4806
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUD54980.1"
/translation="TVATVDVPPTHNTAYSVPPLDQREKVEAKEPLTGSIIEMWDGEI
YHYGLYVEKGLVLGVHKPPAAVSFARIELTPLSLYWRTVYTPPYLVAPETLRKLHGES
FPYNAFDNNCYTFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKK
VANVLLCGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGVVEALILLAELFGVFW
TPPDISTFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSL
RACREIGNYGIEVVKLVMKWFFPTKDEANEMDMVRAIEDAVLDFEAIQNNHMTALLKD
KNSLATFLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSR
MRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVL
WDDYGMSNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDY
VNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDK
NGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDQNRVAAFRKLA
ADNKYGLMETIKVGNKLKGVKTLEQLKDALKDISIKPCRIVYNSMAYDLDSNGSGRVN
VKKVVDHKIQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRL
NVSGIWARPEKQVEAIEEPPTPPTEDWTIAPANTVQEGKKGKNKSGRGKKHTAFSSKG
LSDEEYDEFKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRV
FRPTRKQRREERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPS
LWSRIVNFGSGWGFWVSSNLLITSTHVIPPNMAEAFGVPINQIQIHRSGEFCKMRFPK
AIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGM
LLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEA
TLEGGDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRIKG
GPSLQQVMRDQLKPFTAPRGKPPRPAILEAAKETICNVLEQTIEPPQKWSYAQACASL
DKTTSSGYPHHMRKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVK
TSKIYENIKKRLLWGSDLGTMVRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIF
EKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDV
GDFKIVINEGLPSGVPCTSQWNSISHWLITLCAISEVSGLSPDVVQTNSCFSFYGDDE
IVSTDIKLDPMELTNKLKEYGLIPTRPDKTEGPLIVKESLEGLTFLRRDVCRDPAGWY
GKLDQSSIMRQLFWTKGPNHEDPNETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKL
VITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 4787..6412
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54981.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTEVMALEPVAGGAIAAPLTGQ
TNIIDPWIRNNFVQAPNGEFTISPRNSPGEILLNMELGPELNPFLAHLSRMYNGFAGG
MEVQVLMAGNAFTAGKVIFAAIPPHFPVENLSPPQITMFPHIIIDVRTLEPVLLPMPD
VRNQFFHYNQVNEPRMRLVAMLYTPLRSNGSTEDVFTVSCRVLTRPSPDFEFNYLVPP
TVESRTKPFTLPILTIGEMTNSRFPAPIDMLYTSPNDNVVVQPQNGRCTLDGELQGST
QLVPANVCAFKGKITARIVDQAAHQWHMQIDNPNGTLFDPTEDVPAPLGTPDFKAKIF
GVISQRNDYNDGSQGPANRAHDAVVPTTSAKFTPKLGSILVGTWENNDIETQPSKFTP
VGLLEMNDFNQWSLPNYSGALTLNMGLAPAVFPTFPGEQILFFRSFIPLKGGHGNPAI
DCLLPQEWIQHFYQESAPSQTSVALIRYVNPDTGRVLFEGKLHRQGFITIAKSGDGPI
VVPPNGYFRFDSWVNQFYSLAPMGNGNGRRRIQ"
CDS 6412..>7139
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54982.1"
/translation="MAGAFIAGLAGDIVTNGLGSLVNAGANAINQKVDFENNKYLQSA
SFAHDKEMLKAQIEATKQLQSDMIAIKQSVLSAGGFAPADAARGSVNAPMTKVLDWGG
TRYWAPNSTSTTMYSGGFTGQPVHRPTPNFSVKSKPAPSAVPSSYKSNSTVSTQLSSV
SSGSSRSSASTATSSIPSTTRTMEWVRQQNRELEPHMPGSLRTAFVTPPPSTASSSGT
VSTVPKGVLDSWTPMFNTHRQPLFA"
ORIGIN
1 accgttgcta cagtggacgt cccccccaca cacaataccg cctacagtgt cccccccttg
61 gatcagagag agaaggttga ggcaaaggaa ccactaacag gctcaataat tgagatgtgg
121 gatggtgaga tctaccacta tgggctctat gttgagaaag gcttggtcct tggcgtgcac
181 aaacctccag ctgccgtgag cttcgcacgc atagagctca cccccctttc tctatactgg
241 agaacagtct atacaccacc ctacctggtt gctccagaaa ctctcagaaa actccacggg
301 gagtcattcc catacaacgc atttgacaac aattgctaca ccttctgctg ttgggtcttg
361 gacctgaatg attcttggct caacagaaaa tttgtatcaa ggaccacggg tttctacagg
421 ccctaccaag agtggaacag aaagcctcta ccaaccatgg atgagggaaa acttaagaaa
481 gtggctaatg tgctcctatg cggcctatct gggcttttca ctagaccaat caaggacctc
541 atagggaagc tgagaccact aaacatactc aacatcatca ccaactgtga ttggaccttc
601 cccggagttg tggaagctct catattgctt gcagaactct ttggagtttt ctggacacca
661 ccagacattt ccacctttat agcatcactc ctgggcgatt atgaaatgca gggccctgag
721 gacattgcgg ttgaagttgt gccagtgatc ttgggtggta taggtatggt gcttggattc
781 accaaggaga ggatcggccg gttgctgagc tccgccgcat cctcacttag ggcatgcagg
841 gagatcggca attatgggat agaagtagtg aagctagtga tgaaatggtt tttccccacc
901 aaagatgagg caaatgaaat ggacatggtg agggcaatag aggatgctgt gcttgacttt
961 gaagccatac agaacaacca catgacagca ttactcaaag acaaaaacag cctggctact
1021 ttcctcaggg agttggacat ggaagaggag aaggcgcgta agttatcaac aaagtctgcg
1081 tccccagaca tcattggcac cataaacgcc cttctagcca ggattgccgc cgctagatcc
1141 ctagtccaca aggccaaaga ggaaatgtca tctaggatgc gtcctgttgt catcatgatc
1201 tctggccggc ccgggatagg aaagacgcac ctggcccgtg acttggccaa gaagatggcg
1261 gcaaccctct caggtgatca gagggtgggc ctcgtaccga ggaatggtgt tgatcattgg
1321 gatgcatata aaggtgagag aattgtgctt tgggatgatt atggaatgag caaccctgtg
1381 accgacgcgc tgcggctcca agaacttgcc gacacatgtc ccttaacact caactgtgat
1441 agaatagaaa acaaggggaa agtgtttgac agtgatacca taattattac cactaatttg
1501 gccaatcctg cccctctaga ttatgttaat tttgaagcct gctctcgccg gatcgacttc
1561 cttgtctatg cagactctcc ttcggtggac aaggcgaaga gagacttccc cggtcaacca
1621 gacatgtgga aggacgcctt taaaccagat ttctcacaca taaaactcca actggcacca
1681 caagggggat ttgacaagaa cgggaacacc ccccatggga agggtgtcat gaaaacactg
1741 accacacatt cccttatcgc ccgtgctacg ggtctactgc atgagaggtt agatgagttc
1801 gacttgcagg gacccgagtt gcccgtgtac aactttgatc aaaacagagt cgctgctttc
1861 agaaaacttg cagctgacaa taagtacggg ctcatggaga ccataaaagt gggcaacaaa
1921 ctgaaaggtg tcaagactct agaacaactc aaggacgcct taaaagacat aagtatcaag
1981 ccttgcagaa tagtctacaa ttcgatggct tatgaccttg actcgaacgg gtcagggaga
2041 gtcaacgtca agaaggttgt agaccataag atccagacta acaatgagct caactccgcg
2101 ctcaacaacc tgcgtggcgc tagggtgaga tactatgtca aatgtgttca agagatggtg
2161 tactcacttc tccagatcgc tggcgcagcc ttcgtcactt caagaatgac acggaggcta
2221 aacgtcagtg gtatttgggc caggccagag aaacaggtgg aggccattga agaaccccca
2281 acccccccaa ctgaagattg gactatagcc ccagcaaata cagtccagga gggtaaaaag
2341 ggcaagaaca aaagtggcag aggtaagaaa cacactgcct tctccagcaa aggtctaagt
2401 gatgaggaat atgatgagtt taaaaggatc agggaagaaa ggcaaggaaa atactccata
2461 gaagagtacc tccaggacag ggatcggtac tatgaggaac tagccatagc caaagcaaca
2521 gaagaaaact tctgtgagga ggaagaaata aaaatcagac agagagtctt ccgcccaacc
2581 agaaaacagc gcagggagga aagggcaacc ctagggctgg tcacaggcag tgaaattagg
2641 aagaggaacc cagacgactt caaaccaaga ggaaaattgt gggctgatga tgaccgcagt
2701 gtaaattaca atgagaaaat agattttgaa gcccctccta gcctctggtc ccgaatagtg
2761 aacttcggat cgggttgggg tttctgggtg tcttctaatc tgctgatcac atcaacacat
2821 gtcatccctc cgaacatggc tgaggctttt ggcgtgccaa taaatcagat acaaatacac
2881 agaagtggag aattctgtaa aatgaggttc cccaaggcta taagacctga tgtttcaggc
2941 atgatcctcg aggaaggggc tcctgaagga acagtggtga ccatactgat caaaagaacc
3001 actggtgaac tcatgccact ggccgcccga atgggcaccc atgccaccat gaaaatacaa
3061 ggaaaaatgc ttggaggcca aatgggcatg ctcctcactg gttccaatgc caaaaacatg
3121 gatctcggca ccatccctgg agactgtggt tgtccttatg tgtacaagag gggtaatgat
3181 tgggtggtca taggagtaca caccgcagct gccagaggtg gcaacaccgt gatctgtgcc
3241 acccaggggc cagatggtga ggccaccctc gagggaggag acaaccatgg gacctactgt
3301 ggtgcaccaa tacttggacc aggaagtgca ccaaaactca gcaccaaaac caagttctgg
3361 aggtcatcca acgccccact cccgcctggc acttatgagc ccgcttacct gggaggaaag
3421 gacccaagga tcaagggggg cccgtcatta cagcaggtta tgagggatca actcaaacct
3481 ttcaccgctc cccgagggaa accaccacga ccagcgatcc tagaggctgc taaagaaacc
3541 atttgcaatg tgcttgagca gaccattgaa ccaccccaaa aatggtccta cgctcaagcc
3601 tgcgcctcgt tggataagac aacatcgagt ggttatcccc atcacatgag gaagaatgac
3661 aactggaatg gggaatcctt cactggtgta ctggctgacc aggcctctaa agcaaacctc
3721 atgtttgaac aaggaaaaca catgcaacct gtgtacactg ctgcccttaa agatgagctg
3781 gtcaagacca gcaagatata tgaaaacatc aagaaaaggc tcctatgggg ttcagacctg
3841 ggcacgatgg tccgttgcgc tagggctttt ggcggcctca tggatgaaat gaaagcaaat
3901 tgtgtgaact taccaattag ggttggcatg aacatgaatg aagatggacc catcattttt
3961 gagaaacatt caaaatataa ataccactat gatgctgact actctaggtg ggattcgacc
4021 cagcagagac acatcctagg agctgccctt gaaataatgg ttagattctc agctgagccc
4081 gaattagcac aaatagtgtc tgaggacctc ttggccccca gcgtggtgga cgttggtgat
4141 ttcaaaattg tcataaatga gggcttgccc tctggggtgc catgcacatc acaatggaac
4201 tcaatttctc actggctgat aacattgtgc gccatatcag aagtttctgg gctatcgcca
4261 gatgtggtgc aaacaaattc ctgtttttct ttttatgggg atgatgagat agtcagtacc
4321 gacatcaagt tggatcccat ggagctaact aataagctaa aagagtatgg gctgatccca
4381 acaaggccag ataaaacaga gggacctctc atagtcaaag agagcctgga gggcttgacc
4441 ttcctcagga gggatgtgtg ccgggaccca gctggttggt atggaaaact tgaccaatca
4501 tcaattatga gacagttgtt ctggactaaa ggacccaacc acgaagatcc caatgagaca
4561 atgatcccac actcccaaag acccatacaa ctaatgtcat tgttgggaga ggcagcattg
4621 catgggccaa ctttttataa gaaagtcagc aaactggtca ttactgagct caaagagggt
4681 gggatggatt tctatgtgcc aaggcaggaa cctatgttca ggtggatgag attctctgac
4741 ctcagcactt gggagggcga tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc
4801 gaatgacgct gctccatcta atgatggcgc tgccggcctc gtaccagaga tcaacacaga
4861 ggttatggca cttgaaccag ttgctggggg agcaatcgca gctcctctca ctggacaaac
4921 aaatataatt gatccctgga ttagaaataa ttttgtgcag gccccaaatg gtgaatttac
4981 catatctcct agaaattccc caggagaaat tctattaaat atggaattag gacctgagtt
5041 gaaccccttc ttggctcatc tttccagaat gtataatggt tttgcaggtg gtatggaagt
5101 gcaggtgctg atggcgggga acgctttcac cgctgggaaa gttatcttcg ctgcaatccc
5161 accccatttc ccagtggaga acctaagccc cccacaaata actatgtttc cccatataat
5221 catagatgtt aggaccctag aaccagtctt gttgcccatg cccgatgtga ggaatcaatt
5281 ctttcactac aaccaggtga acgagcccag gatgcgctta gtggccatgc tctatacacc
5341 cctgaggtca aatggatcca ccgaagacgt tttcacagtg tcttgtagag tgttgaccag
5401 gccttcaccg gattttgagt tcaattatct ggtaccccca actgtagagt caagaacaaa
5461 accctttacc ttacctatcc ttacaattgg agaaatgaca aattcacgtt ttcccgcacc
5521 catagatatg ctttatacca gtcccaatga taatgtggtt gtacaaccac agaatggcag
5581 gtgcactctt gatggtgagc ttcaaggatc cacacagcta gtcccagcaa atgtgtgtgc
5641 gtttaaaggc aaaatcacag caaggattgt tgaccaggca gcacaccaat ggcatatgca
5701 aattgacaac cccaatggaa cactgtttga cccaactgag gatgtgcctg cacctctcgg
5761 aacccctgat ttcaaagcta aaatatttgg tgttatatct caaaggaatg attacaatga
5821 tggtagtcaa gggcctgcaa acagggcgca tgatgccgtg gtacctacca catcagccaa
5881 attcacccca aaattgggtt ccatattggt gggaacttgg gagaacaacg acatagaaac
5941 tcagccctcc aaattcactc cagtcggtct gcttgagatg aatgatttta atcagtggtc
6001 actaccaaat tattcagggg ccctaactct caacatgggt cttgcaccag cggtcttccc
6061 aactttccct ggtgaacaaa tccttttctt taggtctttt atcccgctta aaggcggcca
6121 cggcaatcca gccattgact gcctcctccc gcaagagtgg atacagcact tctatcaaga
6181 gtctgcccct tcccaaacca gtgttgcttt gattaggtat gtaaaccctg atacaggacg
6241 agtcctgttt gagggaaaac tgcataggca gggatttata accattgcaa agtcaggaga
6301 tggaccaatt gttgtgcccc caaatggata tttcaggttt gattcttggg taaaccagtt
6361 ttactcactt gcccccatgg gaaatggaaa cgggcgtaga aggattcagt aatggcagga
6421 gcatttatag caggattggc aggggacatt gtcacaaatg gattggggtc attagttaat
6481 gcaggggcta atgctattaa tcaaaaagtt gattttgaaa ataataaata tcttcaatca
6541 gcatcatttg ctcatgataa ggagatgctt aaagcacaaa ttgaggccac taaacaactt
6601 cagtctgata tgattgccat caagcaaagt gtgttatccg ctggcggatt tgcacctgcg
6661 gacgcggcaa ggggatcagt caatgcgccc atgacaaagg tccttgactg gggcggcact
6721 aggtactggg caccaaattc gacctccacg accatgtatt ctggcggttt cacaggacaa
6781 ccagtgcata ggccaacacc aaatttctca gtgaagagca agcccgcgcc aagtgctgta
6841 ccatcatcct ataagtccaa ttccacagtg tcaactcaac tgagctctgt gtcttctggc
6901 tcgtccagat ccagcgcctc cactgcaact agctcaattc catccacaac aagaacaatg
6961 gagtgggtca ggcagcagaa cagagagctg gaaccacaca tgcccggatc gctgaggacg
7021 gcttttgtca caccgccacc cagcacggca tctagctcgg gtacagtctc aaccgtgccc
7081 aagggtgttt tggactcctg gacgcctatg tttaacacac ataggcagcc gcttttcgc
//