Typing tool
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Typing tool
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Complete norovirus genomes
| MG495081 | GII.24 | |
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| GII.P24 |
ORF1: 1..4868
ORF2: 4849..6477
ORF3: 6477..7241
LOCUS MG495081 7241 bp ss-RNA linear VRL 16-JAN-2018
DEFINITION Norovirus GII strain Hu/PE/2014/GII.P24-GII.24/Loreto6424
nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes,
complete cds.
ACCESSION MG495081
VERSION MG495081.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7241)
AUTHORS Chhabra,P., Olortegu,M.P., Aswath,K., Kosek,M., Castro,C.J.,
Marine,R., Ng,T. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7241
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/PE/2014/GII.P24-GII.24/Loreto6424"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Peru"
/collection_date="23-Apr-2014"
/note="genotype: GII.P24-GII.24"
CDS <1..4868
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AUD54977.1"
/translation="NGEDIVIKYTKQEDTVSGVPSVSTVDISPPHDTAYSVPPLDQRE
KVDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAMSIARIELTPLSLYWRT
VYTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYR
PYQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDIIGKLKPLNFLNIVANCDW
TFPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIGM
VLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTIE
DAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVG
LVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKV
FDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDA
FKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQG
PELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKDIRIKPC
RIIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNKLRGARIRYYVKCFQEMI
YSLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPTPPIEDWTITPADTVQEG
KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAI
AKATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLW
ADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFGV
PINQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAAR
MGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHT
AAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNV
LEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLMF
EQGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARSFGGLMDEMKAN
CVRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRYVLGAALEIMVRFSA
EPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMAEVS
GLSPDVIQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTRPDKTEGPLIIKE
SLEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHEDPSETMIPHSQRPVQLM
SLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APEGVNEDGVE"
CDS 4849..6477
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54978.1"
/translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ
TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG
VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTFEPILLPLPD
VRNSFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP
TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT
QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF
GVLSQRNRNTDSGQSGPANRSHDAVVSTRDSRFTPKLGSVMIATWETSDIQDQPTRFT
PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH
IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP
INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6477..7241
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54979.1"
/translation="MAGAFLAGLAGDIATNTMGSLVSAGANAINQKVDFENNKFLQGE
SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSIASSERSNSTQLTSLSS
HSSGSSRSSGSTVVSSLPSSSRTREWVDSQNFNLEPHLPGSLKTAFVTPPSSVASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 caaatggtga ggacatagta atcaagtata ccaaacaaga ggacacggtc agtggggtgc
61 ctagcgtctc caccgtagac atatcccctc cacatgacac tgcatacagt gtcccccccc
121 tggaccaaag ggagaaggtg gatgcaaaag agcccctgac tggttcaata atagagatgt
181 gggacggtga gatctatcat tatgggctct acgtagagaa ggggctagtt cttggcgtgc
241 acaaaccccc agctgccatg agcattgcgc gcatcgagct aacccctctc tctctgtact
301 ggagaacagt atacacaccc ccttacctgg ttgcccctga cacccttagg aaactccatg
361 gtgaaacctt tccctataca gcatttgaca acaattgtta ctcattctgt tgctgggttt
421 tggacctgaa cgattcctgg ctcaacagaa agtttgtgtc tcgaaccacg ggcttctaca
481 gaccctacca agattggaac agaaaaccaa tgccaaccat ggacgaggga aaactcaaga
541 aagtggccaa tgtgttcctg tgcggcctga ctgggctgtt caccaggccc atcaaagaca
601 ttataggtaa gttgaagccg ctgaatttcc ttaacatcgt tgccaactgc gactggacct
661 tccctggcgt tgtggaagca ataattctcc tctcagaact ttttggcatc ttttggacac
721 caccagatat atctgctttc gttgcctcct tactaggtga ctacgaaatg caaggccctg
781 aagacatcgc aaccgagatc gttccagtca tcctcggcgg tattggtatg gttctaggct
841 tcaccaaaga gaaaattggc cgactgctgg gctctgcggc atcatccctt agagcatgca
901 gagagatcgg caactatggg atagaggtgg tgaaactggt aatgaagtgg ttcttcccga
961 ccaaaagtga ggttaatgag atggaaatgg tcagaacaat agaggatgca gtgcttgact
1021 ttgaggcgat agagaacaac cacatgacag ctttactcaa agacaagaac agtctggcca
1081 cctttctcag agcactagac atggaagagg aaaaggcgcg gaaactgtcg accaaatccg
1141 cctcacctga catagtcggc accataaacg cactcttggc gagaatcgcc gctgccagat
1201 ccctagttca cagggccaag gaagagatgt catctaggat gcgtccagtc gtcatcatga
1261 tttctgggcg acctgggatt gggaaaacac acctggcacg cgacctggcc aaaaagatgg
1321 cggccacctt atcgggtgac cagagagtgg gccttgtccc aagaaacggt gtcgatcact
1381 gggatgcata caaaggggag aggatcgtcc tctgggatga ttatggcatg agtaaccctg
1441 tggcagatgc tctccggctc caggaactcg ccgacacctg ccccttgaca ctcaactgtg
1501 acaggataga gaacaaaggg aaggtctttg acagtgacac cctgatcatc accaccaatc
1561 tggccaatcc agctcctctc gactatgtaa actttgaggc ttgttcacgc cgcatagact
1621 tccttgtcta cgcggattcc ccctcagttg acaaagcaaa aagagatttc ccgggccaac
1681 cggacatgtg gaaggacgcc ttcaagtcag atttctcaca cataaagcta caattagcac
1741 cacaaggagg atttgacaag aatggaaaca cccctcatgg gaagggcgtc atgaaaacac
1801 tgaccacaca ctccctcata gcacgcgcca ctggcttgct tcatgagagg ttggatgaat
1861 ttgacctgca aggtccagag ctaccagtgt acaattttga tcaaaacaag gtggccgcgt
1921 tccgaaaact cgcagctgac aacaagtatg gtttcatgga caccttgaga gcaggtaaca
1981 aattgaagga agtcaaaacc ctggaccagt ttaaagaagc agtgaaggac atacgcataa
2041 aaccctgcag gataatttac aactcactag cctatgattt ggattcaaat gggtcaggaa
2101 aggtcaatgt caaaaaggtg ggggaccaac gaatccaggc caacaatgag ctcaactctg
2161 cactcaacaa actgcgcggg gccagaatca gatactatgt gaaatgtttc caagaaatga
2221 tctactcact tctccaaatt gctggtgcgg ccttcgtcac gtctagaatg gcgcagagga
2281 tgaatgtcaa caaactgtgg gccaagccag aaaaacagtc agagaccctc acggaaccac
2341 ctacccctcc aattgaagat tggaccataa caccagcaga cacagtccaa gagggtaaga
2401 aaggtaaaaa caagagtggc aggggcaaga agcacactgc gttctccagc aagggcctca
2461 gtgatgagga gtatgatgaa tacaaaagga tcagggaaga acgtcaagga aagtactcta
2521 tagaggaata cctccaagac agggaccggt actatgaaga attggctata gccaaagcaa
2581 cagaagagaa tttctgtgaa gaggaagaaa tcaaaatcag gcagaggatc ttccgcccaa
2641 ccaggaagca acgtaaggag gagagggcca ccctaggtct tgttacaggt agtgagataa
2701 ggaagaggaa ccccgatgac ttcaagccaa aaggcaagct gtgggccgat gatgaccgca
2761 gtgtcaacta caatgagaga atagactttg aagccccccc tagtctttgg tccaggatag
2821 tcaacttcgg ttcaggatgg ggtttttggg tctcctctaa cctgttcatc acttccacac
2881 atgtcatccc acaaaacatg tctgaagcct ttggagtgcc aataaatcag atacaaatac
2941 acaggagtgg ggaattctgc aaaatgagat tcccgaaagc catcagaccc gacgtttctg
3001 gcatgatcct tgaggagggt gcccctgaag ggacagttgt gaccatattg atcaaaagaa
3061 caactggtga actcatgcca ttagcagccc gcatgggcac ccacgccacc atgaagatac
3121 aaggtagaat gattggaggc cagatgggga tgcttctcac aggatccaac gccaaaaaca
3181 tggaccttgg caccgtccct ggtgactgtg gctgtcccta tgtctacaag aggggcaatg
3241 actgggtcgt cattggggta cacaccgccg ccgctagagg cggcaacaca gtgatctgtg
3301 ccacccaggg gccagatggt gaagccaccc tcgagggagg tgacaaccat gggacgtact
3361 gtggtgcacc catactaggg cctggaaacg ccccaaaact cagtaccaag accaaatttt
3421 ggagatcatc caacacccca cttccccctg gcacatacga acctgcctac ctcggaggta
3481 aagacccaag ggtcaaaggt ggcccgtcac tacaacaagt catgagggaa cagcttaagc
3541 ccttcacagc cccaagagga aaaccgccaa gaccagcgat cttggaggcc gcaaaggaaa
3601 ccatctgtaa tgtactagaa cagaccattg aaccacccca aaagtggtcc tacgcgcaag
3661 cctgcgcgtc cctagacaag acaacttcaa gcggacaccc acaccataaa aagaaaaatg
3721 acaattggaa tggtgaatct ttcactggtg ttctggctga tcaggcgtca aaggccaacc
3781 tcatgtttga gcagggaaaa cacatgcaac ctgtgtacac aggagccctc aaagatgaac
3841 ttgtcaaaac cagcaaaatc tatgagaaca ttaagaagag gcttttatgg ggatcagact
3901 tgggcacgat gatacgctgt gctagatcat ttggtggtct catggacgag atgaaggcaa
3961 actgtgtgag gttaccagtc agggttggta tgaacatgaa tgaggatggg cccataatct
4021 ttgagaaaca ttcaaaatac agataccatt atgatgctga ctattctagg tgggactcaa
4081 cacaacagag atatgtctta ggtgctgccc ttgaaataat ggttaggttc tcagccgagc
4141 cagaattggc acaaattgtg gctgaagatc tcttgtcgcc cagcgtcatg gacgtcggtg
4201 acttcaaaat tactataaat gaaggcttgc cctctggggt cccatgcacg tcccagtgga
4261 attcaattgc tcattggttg ttgacattat gtgccatggc agaggtctca ggattgtcac
4321 cagatgtgat acagtcaaat tcctgcttct ccttttacgg agacgatgag atagtcagca
4381 cagatatcaa attggaccct caaaaattaa cagacaagct aaaagagtac ggcttgatcc
4441 caaccagacc tgacaagaca gaaggccctc tgataatcaa agaaagtttg gagggtttaa
4501 cctttctgag aagagatgtg tgtagagatc cagttgggtg gtttggtaaa cttgatcagt
4561 cttcaatcat gagacaactg tattggacta aaggacccaa tcatgaagac cctagtgaaa
4621 caatgatacc acattcccag aggcctgtgc agctgatgtc cctactaggt gaagcagccc
4681 tacatggacc agctttctac aaaaaggtca gcaaattggt tatcactgaa ctcaaagaag
4741 gtggaatgga tttctatgtg cccaggcaag agcctatgtt tagatggatg aggttctccg
4801 atctgagcac gtgggagggt gatcgcaatc tagctcccga gggtgtgaat gaagatggcg
4861 tcgaatgacg ctgctccatc taatgatggt gctgccaacc tcgtaccaga ggccaacaaa
4921 gaggttatgg cattggaacc agtggcgggc ggggcaatcg ccgcacccct cactggtcaa
4981 acaaatataa ttgacccctg gatcatgaat aattttgtgc aagcaccaaa tggtgaattt
5041 acaatatctc ccagaaattc cccaggagaa gtgttgttaa atctagagtt aggaccagac
5101 ctcaaccctt tccttgccca tttgtctaga atgtataatg gatatgcggg gggagtggag
5161 gtgcaagtga ttatggctgg caacgctttc accgcgggaa aagtcatctt cgcagctgta
5221 ccaccgcact tcccagttga caacctcagc ccccctcagg tgactatgtt tccacatgtt
5281 atagttgatg ttaggacctt tgagccaatc ctacttcccc ttccagatgt gagaaatagc
5341 ttctatcatt ataatcaggt gaatgattca aggatgaggt tgattgctat gctgtatacc
5401 ccactgagat caaatggttc ttccgatgat gttttcactg tatcctgtag agttttgact
5461 aggcccaccc cagattttga gttcaactac ctggtcccac ctactgtcga atcaagaaca
5521 aaacccttca gtgtgcccat cctaactatt ggagaaatga caaattcaag gtttccactg
5581 cccatagaca tgctgtacac cagcccaact gaaaacatag tagttcagcc ccaaaatggt
5641 aggtgcacgt tggaaggaga actactgggc acaacccagt tagtgacccc gaacatctgc
5701 gcgctacgtg gggagatcag ggggcatgaa ggcagtggtg acaaccacaa atggcatttt
5761 atggtgagga gccccaatgg ggcagctttt gacccaactg aggatgtgcc cgccccccta
5821 ggcacccctg atttcatagg tgatgtgttt ggagtcctct cacaaagaaa cagaaacact
5881 gacagtggtc agtctggtcc tgcaaacaga tcacatgatg ctgttgtttc cacaagggac
5941 agcagattca ctccaaaact aggatctgtg atgatagcca cctgggagac cagtgacatc
6001 caagaccagc ccaccagatt cactccagta ggccttgaaa accctgatca ttacaaccaa
6061 tggcaattac caaattattc aggggcatta actctaaaca tggggctggc cccatctgtg
6121 tttccaacct accccggaga gcaaatcctc ttcttccgct cgtacatccc acttaagggc
6181 ggatatggag attcccacat tgattgcctg gtaccacagg aatggatcca acatttctac
6241 caagaatcag ccccctcaca aactgatgtg gcattaatca ggtatgtgaa ccccgaaaca
6301 ggacgtgtcc tgttcgaggc caagttgcat aggcaaggtt acataacagt tgcaaggagt
6361 ggcagcagtc ccatcaatgt cccggccaat ggctatttca gattcgactc ctgggtcaac
6421 caattctact cactcgcccc catgggaact ggaaacgggc gcagaaggat ccaataatgg
6481 caggagcttt cttagcagga ttggcaggcg atatcgccac taacaccatg gggtctttgg
6541 tcagtgcagg ggctaatgca atcaatcaga aagttgattt tgagaataat aaatttcttc
6601 aaggtgaatc ttttaagcat gataaggaaa tgttgaatgc acaggttgaa gccacaaaga
6661 aactccagat ggacatgatt aacatcaaac aaggggtctt gactgctggg ggattttccc
6721 ccactgatgc agcccggggg gccatcaacg cacccatgac taaggtgctg gattggaatg
6781 ggacaaggta ctgggcaccg aatgccacca ccacaacctc aatgtctggt ggcttcacta
6841 gtcaggtcgt gcacaggcca acaccaaatt ttgggaacaa gcaagccccc aggcccgcgc
6901 ctagcattgc ttcatctgag agatcaaatt ctacccaact caccagtctg agctcccact
6961 cctctggatc ttcgaggtcc agtggatcca ccgtggtcag ctcactgccc tcttcgagta
7021 ggactaggga gtgggtagac agtcaaaatt tcaatttgga accccatttg cctgggtcgc
7081 tgaagacagc ctttgtcacc ccaccatcaa gtgttgcttc aagctcagga acagtctcaa
7141 ctgtgcctaa aggtgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
7201 tcttcgcaca ccttcgtaga aggggggagt caaatgtcta g
//