Typing tool
|
Complete norovirus genomes
MG495081 | GII.24 | ||
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GII.P24 |
ORF1: 1..4868 ORF2: 4849..6477 ORF3: 6477..7241LOCUS MG495081 7241 bp ss-RNA linear VRL 16-JAN-2018 DEFINITION Norovirus GII strain Hu/PE/2014/GII.P24-GII.24/Loreto6424 nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION MG495081 VERSION MG495081.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7241) AUTHORS Chhabra,P., Olortegu,M.P., Aswath,K., Kosek,M., Castro,C.J., Marine,R., Ng,T. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7241 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/PE/2014/GII.P24-GII.24/Loreto6424" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="23-Apr-2014" /note="genotype: GII.P24-GII.24" CDS <1..4868 /note="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="AUD54977.1" /translation="NGEDIVIKYTKQEDTVSGVPSVSTVDISPPHDTAYSVPPLDQRE KVDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAMSIARIELTPLSLYWRT VYTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYR PYQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDIIGKLKPLNFLNIVANCDW TFPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIGM VLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTIE DAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINALL ARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVG LVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKV FDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDA FKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQG PELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKDIRIKPC RIIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNKLRGARIRYYVKCFQEMI YSLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPTPPIEDWTITPADTVQEG KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAI AKATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLW ADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFGV PINQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAAR MGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHT AAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNTP LPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNV LEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLMF EQGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARSFGGLMDEMKAN CVRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRYVLGAALEIMVRFSA EPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMAEVS GLSPDVIQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTRPDKTEGPLIIKE SLEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHEDPSETMIPHSQRPVQLM SLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL APEGVNEDGVE" CDS 4849..6477 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUD54978.1" /translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTFEPILLPLPD VRNSFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF GVLSQRNRNTDSGQSGPANRSHDAVVSTRDSRFTPKLGSVMIATWETSDIQDQPTRFT PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" CDS 6477..7241 /note="ORF3; minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUD54979.1" /translation="MAGAFLAGLAGDIATNTMGSLVSAGANAINQKVDFENNKFLQGE SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSIASSERSNSTQLTSLSS HSSGSSRSSGSTVVSSLPSSSRTREWVDSQNFNLEPHLPGSLKTAFVTPPSSVASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 caaatggtga ggacatagta atcaagtata ccaaacaaga ggacacggtc agtggggtgc 61 ctagcgtctc caccgtagac atatcccctc cacatgacac tgcatacagt gtcccccccc 121 tggaccaaag ggagaaggtg gatgcaaaag agcccctgac tggttcaata atagagatgt 181 gggacggtga gatctatcat tatgggctct acgtagagaa ggggctagtt cttggcgtgc 241 acaaaccccc agctgccatg agcattgcgc gcatcgagct aacccctctc tctctgtact 301 ggagaacagt atacacaccc ccttacctgg ttgcccctga cacccttagg aaactccatg 361 gtgaaacctt tccctataca gcatttgaca acaattgtta ctcattctgt tgctgggttt 421 tggacctgaa cgattcctgg ctcaacagaa agtttgtgtc tcgaaccacg ggcttctaca 481 gaccctacca agattggaac agaaaaccaa tgccaaccat ggacgaggga aaactcaaga 541 aagtggccaa tgtgttcctg tgcggcctga ctgggctgtt caccaggccc atcaaagaca 601 ttataggtaa gttgaagccg ctgaatttcc ttaacatcgt tgccaactgc gactggacct 661 tccctggcgt tgtggaagca ataattctcc tctcagaact ttttggcatc ttttggacac 721 caccagatat atctgctttc gttgcctcct tactaggtga ctacgaaatg caaggccctg 781 aagacatcgc aaccgagatc gttccagtca tcctcggcgg tattggtatg gttctaggct 841 tcaccaaaga gaaaattggc cgactgctgg gctctgcggc atcatccctt agagcatgca 901 gagagatcgg caactatggg atagaggtgg tgaaactggt aatgaagtgg ttcttcccga 961 ccaaaagtga ggttaatgag atggaaatgg tcagaacaat agaggatgca gtgcttgact 1021 ttgaggcgat agagaacaac cacatgacag ctttactcaa agacaagaac agtctggcca 1081 cctttctcag agcactagac atggaagagg aaaaggcgcg gaaactgtcg accaaatccg 1141 cctcacctga catagtcggc accataaacg cactcttggc gagaatcgcc gctgccagat 1201 ccctagttca cagggccaag gaagagatgt catctaggat gcgtccagtc gtcatcatga 1261 tttctgggcg acctgggatt gggaaaacac acctggcacg cgacctggcc aaaaagatgg 1321 cggccacctt atcgggtgac cagagagtgg gccttgtccc aagaaacggt gtcgatcact 1381 gggatgcata caaaggggag aggatcgtcc tctgggatga ttatggcatg agtaaccctg 1441 tggcagatgc tctccggctc caggaactcg ccgacacctg ccccttgaca ctcaactgtg 1501 acaggataga gaacaaaggg aaggtctttg acagtgacac cctgatcatc accaccaatc 1561 tggccaatcc agctcctctc gactatgtaa actttgaggc ttgttcacgc cgcatagact 1621 tccttgtcta cgcggattcc ccctcagttg acaaagcaaa aagagatttc ccgggccaac 1681 cggacatgtg gaaggacgcc ttcaagtcag atttctcaca cataaagcta caattagcac 1741 cacaaggagg atttgacaag aatggaaaca cccctcatgg gaagggcgtc atgaaaacac 1801 tgaccacaca ctccctcata gcacgcgcca ctggcttgct tcatgagagg ttggatgaat 1861 ttgacctgca aggtccagag ctaccagtgt acaattttga tcaaaacaag gtggccgcgt 1921 tccgaaaact cgcagctgac aacaagtatg gtttcatgga caccttgaga gcaggtaaca 1981 aattgaagga agtcaaaacc ctggaccagt ttaaagaagc agtgaaggac atacgcataa 2041 aaccctgcag gataatttac aactcactag cctatgattt ggattcaaat gggtcaggaa 2101 aggtcaatgt caaaaaggtg ggggaccaac gaatccaggc caacaatgag ctcaactctg 2161 cactcaacaa actgcgcggg gccagaatca gatactatgt gaaatgtttc caagaaatga 2221 tctactcact tctccaaatt gctggtgcgg ccttcgtcac gtctagaatg gcgcagagga 2281 tgaatgtcaa caaactgtgg gccaagccag aaaaacagtc agagaccctc acggaaccac 2341 ctacccctcc aattgaagat tggaccataa caccagcaga cacagtccaa gagggtaaga 2401 aaggtaaaaa caagagtggc aggggcaaga agcacactgc gttctccagc aagggcctca 2461 gtgatgagga gtatgatgaa tacaaaagga tcagggaaga acgtcaagga aagtactcta 2521 tagaggaata cctccaagac agggaccggt actatgaaga attggctata gccaaagcaa 2581 cagaagagaa tttctgtgaa gaggaagaaa tcaaaatcag gcagaggatc ttccgcccaa 2641 ccaggaagca acgtaaggag gagagggcca ccctaggtct tgttacaggt agtgagataa 2701 ggaagaggaa ccccgatgac ttcaagccaa aaggcaagct gtgggccgat gatgaccgca 2761 gtgtcaacta caatgagaga atagactttg aagccccccc tagtctttgg tccaggatag 2821 tcaacttcgg ttcaggatgg ggtttttggg tctcctctaa cctgttcatc acttccacac 2881 atgtcatccc acaaaacatg tctgaagcct ttggagtgcc aataaatcag atacaaatac 2941 acaggagtgg ggaattctgc aaaatgagat tcccgaaagc catcagaccc gacgtttctg 3001 gcatgatcct tgaggagggt gcccctgaag ggacagttgt gaccatattg atcaaaagaa 3061 caactggtga actcatgcca ttagcagccc gcatgggcac ccacgccacc atgaagatac 3121 aaggtagaat gattggaggc cagatgggga tgcttctcac aggatccaac gccaaaaaca 3181 tggaccttgg caccgtccct ggtgactgtg gctgtcccta tgtctacaag aggggcaatg 3241 actgggtcgt cattggggta cacaccgccg ccgctagagg cggcaacaca gtgatctgtg 3301 ccacccaggg gccagatggt gaagccaccc tcgagggagg tgacaaccat gggacgtact 3361 gtggtgcacc catactaggg cctggaaacg ccccaaaact cagtaccaag accaaatttt 3421 ggagatcatc caacacccca cttccccctg gcacatacga acctgcctac ctcggaggta 3481 aagacccaag ggtcaaaggt ggcccgtcac tacaacaagt catgagggaa cagcttaagc 3541 ccttcacagc cccaagagga aaaccgccaa gaccagcgat cttggaggcc gcaaaggaaa 3601 ccatctgtaa tgtactagaa cagaccattg aaccacccca aaagtggtcc tacgcgcaag 3661 cctgcgcgtc cctagacaag acaacttcaa gcggacaccc acaccataaa aagaaaaatg 3721 acaattggaa tggtgaatct ttcactggtg ttctggctga tcaggcgtca aaggccaacc 3781 tcatgtttga gcagggaaaa cacatgcaac ctgtgtacac aggagccctc aaagatgaac 3841 ttgtcaaaac cagcaaaatc tatgagaaca ttaagaagag gcttttatgg ggatcagact 3901 tgggcacgat gatacgctgt gctagatcat ttggtggtct catggacgag atgaaggcaa 3961 actgtgtgag gttaccagtc agggttggta tgaacatgaa tgaggatggg cccataatct 4021 ttgagaaaca ttcaaaatac agataccatt atgatgctga ctattctagg tgggactcaa 4081 cacaacagag atatgtctta ggtgctgccc ttgaaataat ggttaggttc tcagccgagc 4141 cagaattggc acaaattgtg gctgaagatc tcttgtcgcc cagcgtcatg gacgtcggtg 4201 acttcaaaat tactataaat gaaggcttgc cctctggggt cccatgcacg tcccagtgga 4261 attcaattgc tcattggttg ttgacattat gtgccatggc agaggtctca ggattgtcac 4321 cagatgtgat acagtcaaat tcctgcttct ccttttacgg agacgatgag atagtcagca 4381 cagatatcaa attggaccct caaaaattaa cagacaagct aaaagagtac ggcttgatcc 4441 caaccagacc tgacaagaca gaaggccctc tgataatcaa agaaagtttg gagggtttaa 4501 cctttctgag aagagatgtg tgtagagatc cagttgggtg gtttggtaaa cttgatcagt 4561 cttcaatcat gagacaactg tattggacta aaggacccaa tcatgaagac cctagtgaaa 4621 caatgatacc acattcccag aggcctgtgc agctgatgtc cctactaggt gaagcagccc 4681 tacatggacc agctttctac aaaaaggtca gcaaattggt tatcactgaa ctcaaagaag 4741 gtggaatgga tttctatgtg cccaggcaag agcctatgtt tagatggatg aggttctccg 4801 atctgagcac gtgggagggt gatcgcaatc tagctcccga gggtgtgaat gaagatggcg 4861 tcgaatgacg ctgctccatc taatgatggt gctgccaacc tcgtaccaga ggccaacaaa 4921 gaggttatgg cattggaacc agtggcgggc ggggcaatcg ccgcacccct cactggtcaa 4981 acaaatataa ttgacccctg gatcatgaat aattttgtgc aagcaccaaa tggtgaattt 5041 acaatatctc ccagaaattc cccaggagaa gtgttgttaa atctagagtt aggaccagac 5101 ctcaaccctt tccttgccca tttgtctaga atgtataatg gatatgcggg gggagtggag 5161 gtgcaagtga ttatggctgg caacgctttc accgcgggaa aagtcatctt cgcagctgta 5221 ccaccgcact tcccagttga caacctcagc ccccctcagg tgactatgtt tccacatgtt 5281 atagttgatg ttaggacctt tgagccaatc ctacttcccc ttccagatgt gagaaatagc 5341 ttctatcatt ataatcaggt gaatgattca aggatgaggt tgattgctat gctgtatacc 5401 ccactgagat caaatggttc ttccgatgat gttttcactg tatcctgtag agttttgact 5461 aggcccaccc cagattttga gttcaactac ctggtcccac ctactgtcga atcaagaaca 5521 aaacccttca gtgtgcccat cctaactatt ggagaaatga caaattcaag gtttccactg 5581 cccatagaca tgctgtacac cagcccaact gaaaacatag tagttcagcc ccaaaatggt 5641 aggtgcacgt tggaaggaga actactgggc acaacccagt tagtgacccc gaacatctgc 5701 gcgctacgtg gggagatcag ggggcatgaa ggcagtggtg acaaccacaa atggcatttt 5761 atggtgagga gccccaatgg ggcagctttt gacccaactg aggatgtgcc cgccccccta 5821 ggcacccctg atttcatagg tgatgtgttt ggagtcctct cacaaagaaa cagaaacact 5881 gacagtggtc agtctggtcc tgcaaacaga tcacatgatg ctgttgtttc cacaagggac 5941 agcagattca ctccaaaact aggatctgtg atgatagcca cctgggagac cagtgacatc 6001 caagaccagc ccaccagatt cactccagta ggccttgaaa accctgatca ttacaaccaa 6061 tggcaattac caaattattc aggggcatta actctaaaca tggggctggc cccatctgtg 6121 tttccaacct accccggaga gcaaatcctc ttcttccgct cgtacatccc acttaagggc 6181 ggatatggag attcccacat tgattgcctg gtaccacagg aatggatcca acatttctac 6241 caagaatcag ccccctcaca aactgatgtg gcattaatca ggtatgtgaa ccccgaaaca 6301 ggacgtgtcc tgttcgaggc caagttgcat aggcaaggtt acataacagt tgcaaggagt 6361 ggcagcagtc ccatcaatgt cccggccaat ggctatttca gattcgactc ctgggtcaac 6421 caattctact cactcgcccc catgggaact ggaaacgggc gcagaaggat ccaataatgg 6481 caggagcttt cttagcagga ttggcaggcg atatcgccac taacaccatg gggtctttgg 6541 tcagtgcagg ggctaatgca atcaatcaga aagttgattt tgagaataat aaatttcttc 6601 aaggtgaatc ttttaagcat gataaggaaa tgttgaatgc acaggttgaa gccacaaaga 6661 aactccagat ggacatgatt aacatcaaac aaggggtctt gactgctggg ggattttccc 6721 ccactgatgc agcccggggg gccatcaacg cacccatgac taaggtgctg gattggaatg 6781 ggacaaggta ctgggcaccg aatgccacca ccacaacctc aatgtctggt ggcttcacta 6841 gtcaggtcgt gcacaggcca acaccaaatt ttgggaacaa gcaagccccc aggcccgcgc 6901 ctagcattgc ttcatctgag agatcaaatt ctacccaact caccagtctg agctcccact 6961 cctctggatc ttcgaggtcc agtggatcca ccgtggtcag ctcactgccc tcttcgagta 7021 ggactaggga gtgggtagac agtcaaaatt tcaatttgga accccatttg cctgggtcgc 7081 tgaagacagc ctttgtcacc ccaccatcaa gtgttgcttc aagctcagga acagtctcaa 7141 ctgtgcctaa aggtgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc 7201 tcttcgcaca ccttcgtaga aggggggagt caaatgtcta g //