Typing tool
|
Complete norovirus genomes
MG495080 | GII.23 | ||
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GII.P23 |
ORF1: 1..5044 ORF2: 5025..6656 ORF3: 6656..7395LOCUS MG495080 7395 bp ss-RNA linear VRL 16-JAN-2018 DEFINITION Norovirus GII strain Hu/PE/2011/GII.P23-GII.23/Loreto6422 nonstructural polyprotein gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION MG495080 VERSION MG495080.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7395) AUTHORS Chhabra,P., Olortegu,M.P., Aswath,K., Kosek,M., Castro,C.J., Marine,R., Ng,T. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7395 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/PE/2011/GII.P23-GII.23/Loreto6422" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="05-Nov-2011" /note="genotype: GII.P23-GII.23" CDS <1..5044 /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AUD54974.1" /translation="STNSEIHNKDENTTSNLFANMTVGIKRALGARPKQSALGAQTAN KNGRTTIPPIPPPPPNGEDIVIKYTKQGDTVSGVPTVSTADISPLHDTAYSVPPLDQR EKVDAKEPLTGSILEMWDGEIYHYGLYVERGQVLGVHKPPAAMSIARIELTPLSLYWR TVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFY RPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNILNIVTNCD WTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIG MVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTI EDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINAL LARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRV GLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGK VFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKD AFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQ GQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKDIRIKP CRIIYNSMAYDLDSNGSGRVNVKKVGDQKIQANNELNSALNKLRGARIRYYVKCFQEM VYSLLQIAGAAFVTSRMAQRMNVNKLWTKPEKQLEASVGPPTPPTEEWTITPMDTIQE GKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELA IAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPKGKL WADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFG VPISQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRPTGELMPLAA RMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVH TAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNT PLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAKETICN VLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLM YEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLMDEMKA NCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGAALDIMVRYS AEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMSEV SGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEGPLIIR ESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRPVQL MSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRN LAPESVNEDGVE" CDS 5025..6656 /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="AUD54975.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG IDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT QLITSNICSFRGSISGHEGNDGQHLWHFNITNPNGTPFDPTEDVPAPLGTPDFRGQLY GVISQRDREGIPSENNQKANRSHEGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPMKGGYGSP FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" CDS 6656..>7395 /note="ORF3; minor structural protein; minor capsid protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AUD54976.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA SFAHDKDMLNAQVEATKKLQADMIAIKQGVLVAGGFSPTDAARGAINAPMTKALDWNG TRYWAPNATSTTSMSGGFTGQVSHRTTPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTVASSLPSSGRTRDWVNQQNLNLEPHLPGSLRTAFVTPPSSSASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLR" ORIGIN 1 cagcacaaac agtgaaattc acaacaaaga tgaaaataca acatcaaacc tatttgccaa 61 catgactgtt ggcataaaga gggctctagg ggcgagacca aaacagtccg cccttggagc 121 ccaaacagct aacaagaatg ggagaaccac tatccctccc ataccccccc cacctccaaa 181 tggtgaggac atagtcatca agtataccaa acaaggggat acagtcagtg gagtgcccac 241 cgtctccact gcagacatat ccccattgca tgacaccgca tatagtgtcc cccccttgga 301 ccagagagaa aaggtggacg caaaagaacc cctaactggg tcaatacttg agatgtggga 361 tggtgagatc taccattacg ggctctatgt ggagagaggg caagttctcg gtgtgcacaa 421 accaccagct gctatgagca ttgcacgcat cgaactgacc cccctctctc tatactggag 481 aacagtttac acacctccct acctggtagc tcctgacacc cttaagaagc tccacggtga 541 gacattcccc tacacagcat ttgataacaa ctgctactca ttttgttgtt gggttctgga 601 cctgaacgac tcgtggctca atagaaaatt cgtgtcaagg accacaggct tctatagacc 661 ctaccaagag tggaacagga aaccattgcc aaccatggac gagggaaaac ttaagaaggt 721 ggccaacgtc ttcctgtgtg gcctgtctgg gcttttcacc aggcccatca aagatctcat 781 aggcaaactg aaaccactga acattcttaa cattgtcacc aattgtgatt ggacgttccc 841 gggagtcgta gaggcgatca tcctcctcgc agagctcttt gggatcttct ggacaccacc 901 agacatatct gccttcgtcg cctctctgtt aggtgactat gagatgcaag gccccgagga 961 cattgcgacc gagatagtcc cagtcattct aggtggcatt ggcatggtac ttggtttcac 1021 caaagagaag atcggccggt tgctgggttc cgcggcatca tcactcaggg cctgcaggga 1081 aatcggcaac tatgggatag aggtggtaaa attggtgatg aaatggttct ttccaaccaa 1141 aagtgaggtc aatgagatgg aaatggtcag aacgatagag gacgcagtgc tcgactttga 1201 ggcaattgaa aacaaccaca tgacagctct actcaaagac aaaaatagtc tggccacctt 1261 cctcagggca ttggatatgg aagaagagaa agcgcggaaa ctatcaacca agtccgcgtc 1321 ccccgacata gtcggtacta taaatgcact cctggcgaga attgccgctg ctaggtcact 1381 ggtgcacagg gctaaggaag agatgtcatc aaggatgcgt cctgttgtta tcatgatatc 1441 cgggcgacct gggataggga aaacccatct ggcccgcgac ctagctaaga agatggcagc 1501 cactctgtca ggtgatcaga gagtaggtct ggttccaagg aatggtgttg accattggga 1561 tgcatacaag ggagaaagga tcgtcctgtg ggatgattac ggtatgagca accccgtggc 1621 agacgccctc cgactccagg aactcgccga tacatgcccc ctgacactca actgtgatag 1681 gatagagaac aaaggaaagg tctttgacag tgacaccttg atcatcacta ctaatctggc 1741 caacccggcc cccctggact atgtgaactt tgaagcttgc tcacgccgca tagatttcct 1801 cgtttatgcg gactctcctt cagttgataa ggcaaagaga gacttcccag gtcaaccaga 1861 catgtggaaa gacgccttca aaccagactt ctcacacata aagctacaac tggcaccaca 1921 gggagggttt gacaagaatg ggaacacccc gcatgggaag ggcgtcatga aaacactaac 1981 cacacactcc ctcatagccc gtgccactgg tttactccat gagagattag atgaatttga 2041 cttacagggt caagaattgc cagtctacaa cttcgaccag aacaaggtgg ccgctttccg 2101 gaaactagcg gccgacaaca agtatggtct catggacact ttgagggcag gcaacaaact 2161 gaaggaggtt aagaacctag accaattcaa ggaagcggtg aaggacatcc gcataaagcc 2221 ttgcaggata atctacaact caatggctta tgatctggat tcaaatgggt caggcagagt 2281 caatgttaag aaagtgggag accaaaagat ccaggccaac aatgaactca actccgcact 2341 caacaaactg cgcggggcta gaatcagata ctatgtgaag tgcttccagg aaatggtcta 2401 ctcccttctc cagattgctg gtgcggcctt cgttacatca agaatggcac aaagaatgaa 2461 tgtcaacaaa ctgtggacaa aaccagaaaa acaactggag gcctctgtag ggccccccac 2521 ccccccaact gaagagtgga ccataacacc aatggacacg atccaggagg gtaagaaggg 2581 caagaacaaa agcggtaggg gcaagaaaca tactgcattc tctagtaagg gccttagtga 2641 tgaggagtat gatgagtaca agagaatcag ggaggagcgc caagggaagt actccataga 2701 agaatacctc caggacaggg accggtacta tgaagaattg gccatagcca aagcaacaga 2761 ggaggacttc tgtgaagagg aggagatcaa gataaggcaa agaatcttcc gcccaaccag 2821 gaaacagcgt agggaggaga gagccactct aggccttgtc acaggcagtg aaattagaaa 2881 gaggaacccc gatgatttca aaccaaaagg aaaactgtgg gctgatgatg accgtagtgt 2941 caactacaat gaaaggatag actttgaagc ccctcccagc ctctggtcca gaatagtcaa 3001 cttcggttcg ggttggggct tctgggtctc atcaaatttg ttcatcacct ccacacacgt 3061 catcccacaa aacatgtccg aggctttcgg ggtaccaata agccaaattc aaatacatag 3121 gagtggagag ttctgcaaaa tgaggttccc aaaggccatc aggcccgatg tctctggcat 3181 gattcttgag gaaggcgcgc ctgaaggcac ggtggtgacc atattgatca aaagaccaac 3241 tggtgaactc atgccattgg cagctcgcat gggcacccac gccaccatga aaatacaggg 3301 gaggatgatt ggaggtcaaa tggggatgct tctcacagga tccaacgcca aaaacatgga 3361 ccttggcacc gtgcctggtg actgtggctg cccttatgtc tacaaaagag gcaatgactg 3421 ggtagttatc ggggtgcaca ccgccgccgc caggggtggc aacacggtga tctgtgccac 3481 tcaggggcca gatggtgaag ccacacttga gggtggcgac aaccatggga cctattgtgg 3541 tgcgccaata ttaggaccag gaaacgcccc gaaactcagc accaagacca aattctggag 3601 gtcctccaac actccgctcc cccctggcac atacgaacca gcctacctcg gtggtaagga 3661 cccaagggtc aagggcggcc catcactaca acaagtcatg agggagcaac tcaagccctt 3721 cactgcccca cgtggaaaac caccaaggcc agcggttttg gaggccgcta aggaaaccat 3781 ctgcaacgtg ctggagcaaa ccattgaacc gccccagaag tggtcctatg cacaggcttg 3841 tgcttcccta gacaaaacaa cctcaagtgg ccacccccac cacaagaaga aaaatgacaa 3901 ttggaacggg gaatccttca ctggtgttct ggctgatcag gcttcaaaag caaacctcat 3961 gtatgagcaa gggaaacaca tgcagcctgt gtacacaggc gcactcaaag atgagcttgt 4021 caaaaccagc aagatctatg aaaccattaa gaagagactc ttgtggggtt cagacctcgg 4081 cacaatgata cgctgtgcca ggtcatttgg tggtctcatg gatgaaatga aggcaaactg 4141 tgtgaaccta ccagtcagag ttggcatgaa tatgaatgaa gatggtccca taatctttga 4201 aaagcattca aagtacagat atcactatga tgctgactat tccaggtggg actcaacaca 4261 acagagatgt gtcctgggtg ctgcacttga tataatggtt agatactcag ccgaaccaga 4321 attggcacaa atcgtggctg aggacttgct gtcgcctagc gtcatggacg ttggcgactt 4381 caaaatcacc ataaatgagg gcttaccatc aggagttccg tgcacatccc agtggaactc 4441 aatagctcat tggctgttaa cactctgtgc catgtcagaa gtctcaggac tgtcaccaga 4501 tgtggtacag tcaaattcat gcttctcctt ctacggggat gatgaaatag tcagcactga 4561 catcaaattg gacccccaaa aactgactga caagttgaga gagtatggct taattccaac 4621 tagacccgac aaaacagagg gaccacttat aatcagagag agtctagaag gcctaacatt 4681 cttaaggagg gatgtgtgca gagacccagc aggatggtat ggcaaacttg accaatcatc 4741 aatcatgaga cagttatact ggacaaaagg acccaaccac gaggacccca atgaaacaat 4801 gatcccacat tcccagaggc cagtgcaatt gatgtcccta cttggtgagg cggccctaca 4861 cggaccgaca ttctataaga gagttagcaa gttggtcatc actgaattaa aggaaggtgg 4921 aatggatttc tatgtgccca gacaagaacc tatgtttaga tggatgagat tctctgactt 4981 gagcacgtgg gagggcgatc gcaatctggc tcccgaaagt gtgaatgaag atggcgtcga 5041 atgacgccgc tccatctaat gatggtgcag ccggtctcgt accagagatc aacaacgaga 5101 caatggcttt ggaaccagtg gcgggaggag caattgcagc cccactaact ggacaaacaa 5161 atttcattga tccctggatt agaggtaatt atgtgcaagc accaaatggt gaatttacag 5221 tgtcccccag aaattcgccc ggtgaaattt tgcttaattt agaattaggt cctgaactca 5281 acccattctt gtcccatcta tctagaatgt acaatgggta tgctggcggt attgatgtcc 5341 aagtcatcat ggcaggcaat gccttcaccg ctggtaagat catctttgca gcaatacctc 5401 cccacttccc cgtggaaaat cttagtcccc ctcagatcac tatgttccct catattatag 5461 tggatgtcag gacccttgaa cccataaata tccctgtacc ggatgttagg aacaacttct 5521 tccattataa tcaaaataat gagtctcgca tgagactggt ggccatgttg tacacccctc 5581 ttaggtctaa tgggtctgct gaagatgttt tcacagtgtc atgtagggtc ttaacaaaac 5641 catctgcaga ctttgaattt aattatctag tccccccaac tgtagagtca aggactaaac 5701 ccttcacaat accaatactc acaattgggg aaatgacaaa ttcaagattc ccagtgccta 5761 ttgacatgct tcataccagc ccaacagaaa acattgttgt tcaaccacaa aatggcaggt 5821 gcaccataga tggtgagttg cttggcacca ctcaactgat cacttccaat atctgttcgt 5881 tcagaggatc catctcgggg catgaaggca atgatggcca acacctgtgg cacttcaaca 5941 tcacaaaccc caatggcact ccatttgacc ccactgaaga tgtgcctgcc cccctcggaa 6001 ccccagattt caggggtcaa ttgtatggtg tcatctccca gcgagataga gagggaatac 6061 cctcggaaaa caatcagaag gcaaacaggt cccacgaggg agtgatttca acaatctcac 6121 caaaatttgt ccccaagtta ggttcagtca tgattggcac atggactact gatgatatca 6181 agaatcagcc atccaagttc accccaattg gcctcaatga tgatgataat tttaaacaat 6241 gggaattgcc aaattattct ggggcgctca ccctcaacat ggggttggca cctagtgttt 6301 tccccaccta tcctggtgaa caaatccttt tcttccgctc ttatcttcca atgaagggag 6361 ggtacggtag tccatttatt gactgcctag tgcctcaaga atgggtcgct cacttctacc 6421 aggagtcagc acccgcacaa acagatgtgg ccctaatcag gtatgtaaac cccgaaacag 6481 gacgtgtcct tttcgaggcc aaattgcaca gacaggggtt catcaccgtt gccaagagcg 6541 gcgacagccc catcaatgtg cctgccaatg gttattttag gtttgattct tgggttaatc 6601 agttttactc tcttgccccc atgggaactg ggaacgggcg cagaaggatt cagtaatggc 6661 tggagctttt atagcaggat tggctggtga catgctcaca aacactgtag ggtctctagt 6721 taatgcagga gctaatgcta ttaatcagaa aattgatttt gagaataata aatatttcca 6781 aaatgcatca tttgcccatg ataaggatat gctgaatgca caggttgagg cgaccaagaa 6841 acttcaggct gacatgattg ccatcaagca aggggtatta gtcgcgggcg gcttttcccc 6901 tactgatgca gctcggggag caatcaacgc ccccatgaca aaagctctag attggaatgg 6961 aacaaggtac tgggcgccaa atgccacctc caccacttca atgtcaggtg gcttcacagg 7021 acaggtttcg cacaggacca caccaaattt taaaaccaac caggccccca agcccccacc 7081 tagtagtggg tcttcagtaa ggtccaactc aacccaactc actagtctga gctcccactc 7141 ctctgggtca tctcgatcca gcggatcaac agtggctagc tctttgccct cttctggcag 7201 gactagggat tgggtcaatc aacaaaatct caatttggaa ccacatttgc ctgggtctct 7261 cagaacagct tttgtcactc caccatctag ttcagcctct agttcaggca cagtctcaac 7321 cgtgcctaag ggtgttttgg actcctggac atctgcgttc aacacacgca gacagccgct 7381 ttttgcacac cttcg //