Typing tool
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Typing tool
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Complete norovirus genomes
| MG495080 | GII.23 | |
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| GII.P23 |
ORF1: 1..5044
ORF2: 5025..6656
ORF3: 6656..7395
LOCUS MG495080 7395 bp ss-RNA linear VRL 16-JAN-2018
DEFINITION Norovirus GII strain Hu/PE/2011/GII.P23-GII.23/Loreto6422
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MG495080
VERSION MG495080.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7395)
AUTHORS Chhabra,P., Olortegu,M.P., Aswath,K., Kosek,M., Castro,C.J.,
Marine,R., Ng,T. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7395
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/PE/2011/GII.P23-GII.23/Loreto6422"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Peru"
/collection_date="05-Nov-2011"
/note="genotype: GII.P23-GII.23"
CDS <1..5044
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AUD54974.1"
/translation="STNSEIHNKDENTTSNLFANMTVGIKRALGARPKQSALGAQTAN
KNGRTTIPPIPPPPPNGEDIVIKYTKQGDTVSGVPTVSTADISPLHDTAYSVPPLDQR
EKVDAKEPLTGSILEMWDGEIYHYGLYVERGQVLGVHKPPAAMSIARIELTPLSLYWR
TVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFY
RPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNILNIVTNCD
WTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILGGIG
MVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMVRTI
EDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTINAL
LARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRV
GLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGK
VFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKD
AFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQ
GQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKDIRIKP
CRIIYNSMAYDLDSNGSGRVNVKKVGDQKIQANNELNSALNKLRGARIRYYVKCFQEM
VYSLLQIAGAAFVTSRMAQRMNVNKLWTKPEKQLEASVGPPTPPTEEWTITPMDTIQE
GKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELA
IAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPKGKL
WADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSEAFG
VPISQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRPTGELMPLAA
RMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIGVH
TAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRSSNT
PLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAKETICN
VLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKANLM
YEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLMDEMKA
NCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGAALDIMVRYS
AEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMSEV
SGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEGPLIIR
ESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRPVQL
MSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRN
LAPESVNEDGVE"
CDS 5025..6656
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54975.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ
TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG
IDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD
VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP
TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT
QLITSNICSFRGSISGHEGNDGQHLWHFNITNPNGTPFDPTEDVPAPLGTPDFRGQLY
GVISQRDREGIPSENNQKANRSHEGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF
TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPMKGGYGSP
FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS
PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6656..>7395
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54976.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA
SFAHDKDMLNAQVEATKKLQADMIAIKQGVLVAGGFSPTDAARGAINAPMTKALDWNG
TRYWAPNATSTTSMSGGFTGQVSHRTTPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS
HSSGSSRSSGSTVASSLPSSGRTRDWVNQQNLNLEPHLPGSLRTAFVTPPSSSASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLR"
ORIGIN
1 cagcacaaac agtgaaattc acaacaaaga tgaaaataca acatcaaacc tatttgccaa
61 catgactgtt ggcataaaga gggctctagg ggcgagacca aaacagtccg cccttggagc
121 ccaaacagct aacaagaatg ggagaaccac tatccctccc ataccccccc cacctccaaa
181 tggtgaggac atagtcatca agtataccaa acaaggggat acagtcagtg gagtgcccac
241 cgtctccact gcagacatat ccccattgca tgacaccgca tatagtgtcc cccccttgga
301 ccagagagaa aaggtggacg caaaagaacc cctaactggg tcaatacttg agatgtggga
361 tggtgagatc taccattacg ggctctatgt ggagagaggg caagttctcg gtgtgcacaa
421 accaccagct gctatgagca ttgcacgcat cgaactgacc cccctctctc tatactggag
481 aacagtttac acacctccct acctggtagc tcctgacacc cttaagaagc tccacggtga
541 gacattcccc tacacagcat ttgataacaa ctgctactca ttttgttgtt gggttctgga
601 cctgaacgac tcgtggctca atagaaaatt cgtgtcaagg accacaggct tctatagacc
661 ctaccaagag tggaacagga aaccattgcc aaccatggac gagggaaaac ttaagaaggt
721 ggccaacgtc ttcctgtgtg gcctgtctgg gcttttcacc aggcccatca aagatctcat
781 aggcaaactg aaaccactga acattcttaa cattgtcacc aattgtgatt ggacgttccc
841 gggagtcgta gaggcgatca tcctcctcgc agagctcttt gggatcttct ggacaccacc
901 agacatatct gccttcgtcg cctctctgtt aggtgactat gagatgcaag gccccgagga
961 cattgcgacc gagatagtcc cagtcattct aggtggcatt ggcatggtac ttggtttcac
1021 caaagagaag atcggccggt tgctgggttc cgcggcatca tcactcaggg cctgcaggga
1081 aatcggcaac tatgggatag aggtggtaaa attggtgatg aaatggttct ttccaaccaa
1141 aagtgaggtc aatgagatgg aaatggtcag aacgatagag gacgcagtgc tcgactttga
1201 ggcaattgaa aacaaccaca tgacagctct actcaaagac aaaaatagtc tggccacctt
1261 cctcagggca ttggatatgg aagaagagaa agcgcggaaa ctatcaacca agtccgcgtc
1321 ccccgacata gtcggtacta taaatgcact cctggcgaga attgccgctg ctaggtcact
1381 ggtgcacagg gctaaggaag agatgtcatc aaggatgcgt cctgttgtta tcatgatatc
1441 cgggcgacct gggataggga aaacccatct ggcccgcgac ctagctaaga agatggcagc
1501 cactctgtca ggtgatcaga gagtaggtct ggttccaagg aatggtgttg accattggga
1561 tgcatacaag ggagaaagga tcgtcctgtg ggatgattac ggtatgagca accccgtggc
1621 agacgccctc cgactccagg aactcgccga tacatgcccc ctgacactca actgtgatag
1681 gatagagaac aaaggaaagg tctttgacag tgacaccttg atcatcacta ctaatctggc
1741 caacccggcc cccctggact atgtgaactt tgaagcttgc tcacgccgca tagatttcct
1801 cgtttatgcg gactctcctt cagttgataa ggcaaagaga gacttcccag gtcaaccaga
1861 catgtggaaa gacgccttca aaccagactt ctcacacata aagctacaac tggcaccaca
1921 gggagggttt gacaagaatg ggaacacccc gcatgggaag ggcgtcatga aaacactaac
1981 cacacactcc ctcatagccc gtgccactgg tttactccat gagagattag atgaatttga
2041 cttacagggt caagaattgc cagtctacaa cttcgaccag aacaaggtgg ccgctttccg
2101 gaaactagcg gccgacaaca agtatggtct catggacact ttgagggcag gcaacaaact
2161 gaaggaggtt aagaacctag accaattcaa ggaagcggtg aaggacatcc gcataaagcc
2221 ttgcaggata atctacaact caatggctta tgatctggat tcaaatgggt caggcagagt
2281 caatgttaag aaagtgggag accaaaagat ccaggccaac aatgaactca actccgcact
2341 caacaaactg cgcggggcta gaatcagata ctatgtgaag tgcttccagg aaatggtcta
2401 ctcccttctc cagattgctg gtgcggcctt cgttacatca agaatggcac aaagaatgaa
2461 tgtcaacaaa ctgtggacaa aaccagaaaa acaactggag gcctctgtag ggccccccac
2521 ccccccaact gaagagtgga ccataacacc aatggacacg atccaggagg gtaagaaggg
2581 caagaacaaa agcggtaggg gcaagaaaca tactgcattc tctagtaagg gccttagtga
2641 tgaggagtat gatgagtaca agagaatcag ggaggagcgc caagggaagt actccataga
2701 agaatacctc caggacaggg accggtacta tgaagaattg gccatagcca aagcaacaga
2761 ggaggacttc tgtgaagagg aggagatcaa gataaggcaa agaatcttcc gcccaaccag
2821 gaaacagcgt agggaggaga gagccactct aggccttgtc acaggcagtg aaattagaaa
2881 gaggaacccc gatgatttca aaccaaaagg aaaactgtgg gctgatgatg accgtagtgt
2941 caactacaat gaaaggatag actttgaagc ccctcccagc ctctggtcca gaatagtcaa
3001 cttcggttcg ggttggggct tctgggtctc atcaaatttg ttcatcacct ccacacacgt
3061 catcccacaa aacatgtccg aggctttcgg ggtaccaata agccaaattc aaatacatag
3121 gagtggagag ttctgcaaaa tgaggttccc aaaggccatc aggcccgatg tctctggcat
3181 gattcttgag gaaggcgcgc ctgaaggcac ggtggtgacc atattgatca aaagaccaac
3241 tggtgaactc atgccattgg cagctcgcat gggcacccac gccaccatga aaatacaggg
3301 gaggatgatt ggaggtcaaa tggggatgct tctcacagga tccaacgcca aaaacatgga
3361 ccttggcacc gtgcctggtg actgtggctg cccttatgtc tacaaaagag gcaatgactg
3421 ggtagttatc ggggtgcaca ccgccgccgc caggggtggc aacacggtga tctgtgccac
3481 tcaggggcca gatggtgaag ccacacttga gggtggcgac aaccatggga cctattgtgg
3541 tgcgccaata ttaggaccag gaaacgcccc gaaactcagc accaagacca aattctggag
3601 gtcctccaac actccgctcc cccctggcac atacgaacca gcctacctcg gtggtaagga
3661 cccaagggtc aagggcggcc catcactaca acaagtcatg agggagcaac tcaagccctt
3721 cactgcccca cgtggaaaac caccaaggcc agcggttttg gaggccgcta aggaaaccat
3781 ctgcaacgtg ctggagcaaa ccattgaacc gccccagaag tggtcctatg cacaggcttg
3841 tgcttcccta gacaaaacaa cctcaagtgg ccacccccac cacaagaaga aaaatgacaa
3901 ttggaacggg gaatccttca ctggtgttct ggctgatcag gcttcaaaag caaacctcat
3961 gtatgagcaa gggaaacaca tgcagcctgt gtacacaggc gcactcaaag atgagcttgt
4021 caaaaccagc aagatctatg aaaccattaa gaagagactc ttgtggggtt cagacctcgg
4081 cacaatgata cgctgtgcca ggtcatttgg tggtctcatg gatgaaatga aggcaaactg
4141 tgtgaaccta ccagtcagag ttggcatgaa tatgaatgaa gatggtccca taatctttga
4201 aaagcattca aagtacagat atcactatga tgctgactat tccaggtggg actcaacaca
4261 acagagatgt gtcctgggtg ctgcacttga tataatggtt agatactcag ccgaaccaga
4321 attggcacaa atcgtggctg aggacttgct gtcgcctagc gtcatggacg ttggcgactt
4381 caaaatcacc ataaatgagg gcttaccatc aggagttccg tgcacatccc agtggaactc
4441 aatagctcat tggctgttaa cactctgtgc catgtcagaa gtctcaggac tgtcaccaga
4501 tgtggtacag tcaaattcat gcttctcctt ctacggggat gatgaaatag tcagcactga
4561 catcaaattg gacccccaaa aactgactga caagttgaga gagtatggct taattccaac
4621 tagacccgac aaaacagagg gaccacttat aatcagagag agtctagaag gcctaacatt
4681 cttaaggagg gatgtgtgca gagacccagc aggatggtat ggcaaacttg accaatcatc
4741 aatcatgaga cagttatact ggacaaaagg acccaaccac gaggacccca atgaaacaat
4801 gatcccacat tcccagaggc cagtgcaatt gatgtcccta cttggtgagg cggccctaca
4861 cggaccgaca ttctataaga gagttagcaa gttggtcatc actgaattaa aggaaggtgg
4921 aatggatttc tatgtgccca gacaagaacc tatgtttaga tggatgagat tctctgactt
4981 gagcacgtgg gagggcgatc gcaatctggc tcccgaaagt gtgaatgaag atggcgtcga
5041 atgacgccgc tccatctaat gatggtgcag ccggtctcgt accagagatc aacaacgaga
5101 caatggcttt ggaaccagtg gcgggaggag caattgcagc cccactaact ggacaaacaa
5161 atttcattga tccctggatt agaggtaatt atgtgcaagc accaaatggt gaatttacag
5221 tgtcccccag aaattcgccc ggtgaaattt tgcttaattt agaattaggt cctgaactca
5281 acccattctt gtcccatcta tctagaatgt acaatgggta tgctggcggt attgatgtcc
5341 aagtcatcat ggcaggcaat gccttcaccg ctggtaagat catctttgca gcaatacctc
5401 cccacttccc cgtggaaaat cttagtcccc ctcagatcac tatgttccct catattatag
5461 tggatgtcag gacccttgaa cccataaata tccctgtacc ggatgttagg aacaacttct
5521 tccattataa tcaaaataat gagtctcgca tgagactggt ggccatgttg tacacccctc
5581 ttaggtctaa tgggtctgct gaagatgttt tcacagtgtc atgtagggtc ttaacaaaac
5641 catctgcaga ctttgaattt aattatctag tccccccaac tgtagagtca aggactaaac
5701 ccttcacaat accaatactc acaattgggg aaatgacaaa ttcaagattc ccagtgccta
5761 ttgacatgct tcataccagc ccaacagaaa acattgttgt tcaaccacaa aatggcaggt
5821 gcaccataga tggtgagttg cttggcacca ctcaactgat cacttccaat atctgttcgt
5881 tcagaggatc catctcgggg catgaaggca atgatggcca acacctgtgg cacttcaaca
5941 tcacaaaccc caatggcact ccatttgacc ccactgaaga tgtgcctgcc cccctcggaa
6001 ccccagattt caggggtcaa ttgtatggtg tcatctccca gcgagataga gagggaatac
6061 cctcggaaaa caatcagaag gcaaacaggt cccacgaggg agtgatttca acaatctcac
6121 caaaatttgt ccccaagtta ggttcagtca tgattggcac atggactact gatgatatca
6181 agaatcagcc atccaagttc accccaattg gcctcaatga tgatgataat tttaaacaat
6241 gggaattgcc aaattattct ggggcgctca ccctcaacat ggggttggca cctagtgttt
6301 tccccaccta tcctggtgaa caaatccttt tcttccgctc ttatcttcca atgaagggag
6361 ggtacggtag tccatttatt gactgcctag tgcctcaaga atgggtcgct cacttctacc
6421 aggagtcagc acccgcacaa acagatgtgg ccctaatcag gtatgtaaac cccgaaacag
6481 gacgtgtcct tttcgaggcc aaattgcaca gacaggggtt catcaccgtt gccaagagcg
6541 gcgacagccc catcaatgtg cctgccaatg gttattttag gtttgattct tgggttaatc
6601 agttttactc tcttgccccc atgggaactg ggaacgggcg cagaaggatt cagtaatggc
6661 tggagctttt atagcaggat tggctggtga catgctcaca aacactgtag ggtctctagt
6721 taatgcagga gctaatgcta ttaatcagaa aattgatttt gagaataata aatatttcca
6781 aaatgcatca tttgcccatg ataaggatat gctgaatgca caggttgagg cgaccaagaa
6841 acttcaggct gacatgattg ccatcaagca aggggtatta gtcgcgggcg gcttttcccc
6901 tactgatgca gctcggggag caatcaacgc ccccatgaca aaagctctag attggaatgg
6961 aacaaggtac tgggcgccaa atgccacctc caccacttca atgtcaggtg gcttcacagg
7021 acaggtttcg cacaggacca caccaaattt taaaaccaac caggccccca agcccccacc
7081 tagtagtggg tcttcagtaa ggtccaactc aacccaactc actagtctga gctcccactc
7141 ctctgggtca tctcgatcca gcggatcaac agtggctagc tctttgccct cttctggcag
7201 gactagggat tgggtcaatc aacaaaatct caatttggaa ccacatttgc ctgggtctct
7261 cagaacagct tttgtcactc caccatctag ttcagcctct agttcaggca cagtctcaac
7321 cgtgcctaag ggtgttttgg actcctggac atctgcgttc aacacacgca gacagccgct
7381 ttttgcacac cttcg
//