Typing tool
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Typing tool
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Complete norovirus genomes
| MG495079 | GII.NA1 | |
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| GII.PNA1 |
ORF1: 1..4866
ORF2: 4847..6475
ORF3: 6475..7224
LOCUS MG495079 7224 bp ss-RNA linear VRL 16-JAN-2018
DEFINITION Norovirus GII strain Hu/PE/2013/GII.PNA2-GII.NA2/Loreto1257
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MG495079
VERSION MG495079.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7224)
AUTHORS Chhabra,P., Olortegui,M.P., Kosek,M., Castro,C.J., Marine,R., Ng,T.
and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7224
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/PE/2013/GII.PNA2-GII.NA2/Loreto1257"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Peru"
/collection_date="06-May-2013"
/note="genotype: GII.PNA2-GII.NA2"
CDS <1..4866
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUD54971.1"
/translation="NGEDIVVKYTRQGDVIEGVPAVSTVDKSPVHDTAYSVPPLDQRE
KVDAKEPLTGSILEMWDGEIYHYGLYVEKGQVLGVHKPPAAISFARIELTTLSLYWRV
VYAPPYLVAPDTLKKLHGENFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYR
PYQDWNRRPLPTMDDGKLKKVANVLLCGLSGLFTRPIKDLIGKLRPLNILNILTNCDW
TFPGVVEALILLAELFGVFWTPPDISAFVASLLGDYEMQGPEDIASEVVPVILGGIGM
VLGFTKEKIGRLLSSAASSLRACKEIGNYGIEVVKLVMKWFFPTKNEASEMEMVRTIE
DAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEAKARKLSTKSASPDIVGTINALL
ARIAAARSLAHRAKEEMSSRMRPVVIMISGRPGIGKTHMARELAKRMATTLSGDQRVG
LVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIENKGKV
FDSDALIITTNLSGPAPLDYVNFEACSRRVDFLVYAESPDVDKAKRDFPGQPDMWKDA
FKSDFSHIKLQLAPQGGFDKNGNTPHGKGIMKSLTIHSLVARATGLLHERLDEFDLQG
PELPLYNFDQNKVAAFRQLAADNKYSFMDTIRAGNKLKEVKTLEQFKEAVKNIRIKPC
KIMYNHTLYVLDSNGSGKVTVNKVENHKIQTNSELNSALNNLRGARIRYYVKCFQEMI
YSLLQIAGAAFVTTRMAQRLNVNMLWTKPETQTSAPTEPPAPPERDWTIAPVDTMQEG
KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAI
AKATEEDFCEEEEVKIRQRIFRPTKKQRREERATLGLVSGSEIRKRNPDDFKPRGKLW
ADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPPGVKEFFGV
PINQIQIHRSGEFCKMRFPKAIRPDVSGMVLEEGAPEGTVVTALIKRTTGELMPLAVR
MGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNEWVVIGVHT
AAARGGNTVICATQGPDGEATLEGGENHGTYCGAPILGPGTAPKLSTKTKFWRSSTAP
LPPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTAPRGKPPRPAVLEAAKETICNV
LEQTIEPPQKWSYSQACASLDKTTSSGYPHHKKKNDNWNGESFTGALADQASKANLMF
EQGKHMQPVYTAALKDELVKTSKIYESIKKRLLWGSDLGTMIRCARSFGGLMDELKAN
CVNLPIRVGMNVNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRNILGVAIEIMVKFSA
EPELAQVVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCAMSEVT
GLSPDVIQSNSCFSFYGDDEIVSTDIKLDAQKLTDKLRQYGLVPTRPDKTEGPLVIRE
SLEGITFLRRDVCRDPAGWYGKLDQSSIMRQLYWTRGPNHEDPNETMIPHSQRPVQLM
SLLGEAALHGPTFYKKVSKLVITELKEGGMDFYVPRHEPMFRWMRFSDLSTWEGDRNL
APEGVNEDGVE"
CDS 4847..6475
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54972.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ
TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
IDVQVIMAGNAFTAGKIIFAAVPPHFPVENISPPQITMFPHIIVDVRTLEPINIPVPD
VRNNFFHYNQDRDSRMRLVAMLYTPLRSNGSTDDVFTVSCRVLTKPSADFEFNYLVPP
TVESRTKPFSIPILTIGEMTNSRFPLPIDMLYTSPTENLVVQPQNGRCTTEGELLGTT
QLVTPSICSLRGAITGHEGNDDDHKWHMTVTSPNGAAFDPTEDVPAPLGTPDFTGDIY
GVLSQRDRNINPGQTAPANRAHEAVVSTRSNKFTPKLGSVMIATWETTDVLQQPTKFT
PVGLESPNHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSFIPLKGGYGNSA
IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKTGDSP
INVPANGYFRFDSWVNPFYSLAPMGTGNGRRRNQ"
CDS 6475..>7224
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54973.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFAHDKEMLNAQVEATKKLQADMINIKQGVLTAGGFSPTDAARGAIGAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTGQTVHRAPPNFKTNQTPKSIPSSGSSVRSNSTQLTSLSS
HSSGSSRSSGSTVISSLPSSSRTGEWVRQQNRNLEPYLPGSLRTAYVTPPSSAASSSG
TVSTVPKGVLDSWRSAFNTRRQPLFAHLRRRG"
ORIGIN
1 aatggtgaag acatagtggt caaatacacc agacaaggtg atgtcataga gggggtacct
61 gctgtctcca cagtagacaa atctcccgtc cacgacaccg catatagcgt ccctccatta
121 gaccagaggg agaaggttga tgcaaaagaa ccactaactg gatcaatcct tgaaatgtgg
181 gatggtgaga tttatcacta tgggttgtat gtggagaaag gccaagttct tggcgtgcac
241 aaaccaccag ctgccataag ctttgcacgt atagaactga ccacactctc actttattgg
301 agagtagtct acgcgccacc atacctagtg gcaccagaca cacttaagaa actccatggg
361 gaaaatttcc cttatacagc cttcgacaac aactgctatt ctttttgctg ttgggtcctg
421 gatctcaacg attcatggct caatagaaaa tttgtatcaa gaaccactgg cttttacaga
481 ccataccagg actggaacag aaggccacta cccacaatgg atgatggcaa actcaagaag
541 gtggctaacg tgctcctgtg tggtttatca ggtctcttca ccagacctat taaagacctc
601 ataggtaaac ttagaccact caacatcctc aacatcctta ccaactgtga ctggaccttc
661 ccaggagtag tggaagccct cattctactt gcagagctgt tcggggtttt ctggacacca
721 ccagacatat ctgctttcgt tgcctccctg ttgggagact acgagatgca aggccccgaa
781 gacatcgcat ctgaagttgt tccagttatc ctgggaggta ttggtatggt tttagggttc
841 acaaaagaga aaattggccg actgctcagc tcagctgcat catcgctgag ggcttgcaag
901 gaaattggta attacggaat agaagtggtg aagttagtaa tgaaatggtt tttccctact
961 aaaaatgagg ctagtgagat ggaaatggtc agaactatag aggatgctgt gctcgacttt
1021 gaggcgatag agaacaacca catgacagca ttgctcaagg ataagaacag cctggccact
1081 ttcctcaggg cactggacat ggaggaagcg aaagcccgaa aactgtcaac caaatccgca
1141 tcaccagaca tagtcggcac cataaatgcc ctcttagcca gaatcgcagc tgccagatca
1201 ctcgcacacc gggctaaaga agagatgtca tccaggatgc gtccagttgt catcatgata
1261 tctggacgcc caggtatagg gaagactcac atggcacgtg aattggcaaa gaggatggca
1321 acaacactct caggtgacca gagagtgggt ttagtaccaa gaaatggggt tgaccactgg
1381 gatgcctaca agggagaaag aattgtcctg tgggatgatt atggcatgag caatcctgta
1441 gcggatgcat tgagactgca agaattggcc gacacatgtc ctttaaccct caattgtgat
1501 aggatagaga acaaagggaa agtgtttgat agtgatgctt taattattac caccaatctg
1561 tctggtcctg cccctcttga ctatgtcaat tttgaagcct gctcccggcg tgttgatttt
1621 cttgtctatg cagagtcccc tgatgtagat aaagcaaaga gagactttcc tggccaacca
1681 gacatgtgga aagatgcttt taaatcagac ttctcacaca taaaactgca actggctcca
1741 caggggggat ttgacaagaa tggaaacacc ccacatggaa aggggatcat gaagtccctg
1801 accatacact ctcttgtagc acgtgccact ggtctcctgc acgaaagact tgatgaattt
1861 gacctccagg gccctgaact cccactatat aattttgacc aaaacaaggt ggctgcattc
1921 agacaacttg cagctgataa caaatatagt ttcatggaca ccataagggc cggtaacaaa
1981 ctcaaggaag ttaagacctt agaacaattc aaggaagctg tgaaaaacat acgcataaaa
2041 ccttgtaaga taatgtataa ccacacttta tacgttctag actcaaatgg atcaggaaag
2101 gtcactgtaa acaaggttga aaatcacaaa atccaaacca atagtgaact caattcggcg
2161 ctaaacaatc tacgcggcgc tagaataagg tactatgtca agtgtttcca agaaatgatt
2221 tactcactac tacaaattgc aggagcagcc tttgtcacaa caaggatggc tcaacgactg
2281 aatgttaaca tgctttggac taagccggaa actcagacca gtgctcccac agagccacct
2341 gcccccccag aacgggactg gaccatagcg ccagtcgata ccatgcagga aggcaagaaa
2401 ggcaagaaca agagtggtag aggtaagaaa cacactgcat tctctagtaa aggcctgagt
2461 gatgaagagt acgatgagta caaaagaatc agggaagaac ggcaaggcaa atactccata
2521 gaagaatacc ttcaagatag ggacagatat tatgaagaat tggccatagc caaagcaaca
2581 gaggaagact tctgtgagga ggaagaggtc aagataagac aaagaatatt tagaccaacc
2641 aagaaacaga ggagagaaga gagggccacc ttggggctgg tctctggcag tgagataaga
2701 aagagaaatc cagatgactt caaaccaaga ggtaagttgt gggctgatga tgatcgtagc
2761 gtgaactaca atgaaagaat tgactttgag gcccccccaa gtctttggtc caggatcgtc
2821 aactttggat caggctgggg tttctgggtc tcatcaaatt tgttcatcac ttccacacat
2881 gtgatccctc cgggggtgaa agaattcttt ggagtaccaa taaaccaaat ccaaatacac
2941 aggagtggtg agttttgcaa aatgagattc cctaaggcaa ttaggcctga tgtatctggc
3001 atggttcttg aagaaggcgc ccctgaggga acagtggtga ctgcgctgat caaaaggaca
3061 actggtgaac tcatgccatt ggcagtacgc atggggactc atgccacaat gaaaatacag
3121 ggtagaatga ttggcggtca aatggggatg cttctcacag ggtccaatgc caaaaatatg
3181 gaccttggca cagtgcctgg agactgtggc tgcccttatg tctacaaaag gggcaatgag
3241 tgggttgtca taggagtgca caccgcagct gctagaggtg gcaacacagt gatctgcgcc
3301 acccaaggcc cagatggtga ggccactctc gagggtggtg aaaaccatgg gacatactgt
3361 ggggcaccca tccttggacc aggcaccgcc ccaaaactca gcacaaagac aaaattttgg
3421 agatcatcca ctgcccctct cccaccagga acttatgaac cagcctatct gggtgggaag
3481 gatccaagaa tcaaaggtgg gccatcactc caacaagtca tgagagacca attaaaaccc
3541 ttcaccgcgc cccgcggaaa accaccaagg ccagcggttc tagaagccgc aaaagagaca
3601 atttgcaatg tgcttgaaca aaccattgaa ccaccccaaa aatggtccta ctcccaggct
3661 tgtgcttcat tggacaagac aacgtctagt ggttatcccc atcataaaaa gaaaaatgac
3721 aattggaatg gtgagtcttt caccggtgct ctggcagacc aggcctcaaa agcaaacctc
3781 atgtttgaac aagggaaaca catgcagcct gtttatacag ctgcacttaa agatgagctt
3841 gtcaaaacta gcaagatcta tgaaagcata aagaagaggc ttctctgggg gtcggacttg
3901 ggcacaatga tccgttgtgc aaggtctttt ggtgggctca tggatgaatt aaaagcaaac
3961 tgtgtgaatc taccaattag agttggcatg aatgtgaatg aggatggacc cataatattt
4021 gagaaacatt caaaatataa atatcattat gacgctgatt attccagatg ggactcaaca
4081 caacaaagaa acatcttggg ggttgctatt gaaatcatgg tcaaattttc agcagaacct
4141 gaattagcac aagttgtggc tgaggacctt ctgtctccca gcgtcgttga cgttggtgat
4201 ttcaaaattg ccataaatga gggcctgcct tcaggggtcc catgtacatc ccaatggaac
4261 tcaattgctc attggctact aactctatgt gccatgtcag aagtgacagg actatcccca
4321 gatgtgatcc aatcaaactc atgcttttca ttttatgggg atgatgaaat agttagcact
4381 gatattaaat tagatgcaca aaaattgact gacaaattaa ggcaatatgg attggtgcca
4441 accagaccag acaaaacaga aggaccattg gtcatcaggg aaagcttaga gggcataacc
4501 ttcctcagga gggacgtgtg cagagaccca gcagggtggt atggcaagct tgaccaatcc
4561 tcaatcatga ggcaactgta ttggaccagg ggacctaatc atgaagaccc taatgaaact
4621 atgattccac attcccaaag acctgtgcaa cttatgtcac tccttggtga agcagctctt
4681 catgggccaa ctttctacaa aaaggttagc aaattggtca tcactgaact caaagaaggt
4741 ggaatggact tttatgtgcc tagacatgaa cccatgttca ggtggatgag attctctgat
4801 ctaagcactt gggagggcga tcgcaatctg gctcccgaag gtgtgaatga agatggcgtc
4861 gaatgacgcc gctccatcta acgatggtgc agccggtctc gtaccagaga tcaacaacga
4921 gacaatggct ttggaaccgg tggcgggagg agctatcgca gcccccttaa ccgggcagac
4981 aaatttcatt gatccctgga ttagaggtaa ttatgtgcaa gcacctaatg gtgaattcac
5041 agtatcccct agaaactcac ctggtgaaat cttacttaat ttggaattag gtcctgaact
5101 taacccattt ctggcccatt tatctagaat gtacaatggg tatgctggtg gcattgatgt
5161 ccaagtcatc atggcaggta atgccttcac tgctggcaag atcatctttg ctgcagtgcc
5221 gccccacttc ccagttgaaa atattagtcc ccctcaaatc accatgttcc ctcatattat
5281 agtagatgtg agaactcttg aaccaataaa tatccccgta cccgatgtca ggaacaactt
5341 ctttcattat aatcaggata gggattcccg tatgaggttg gtggctatgt tgtacactcc
5401 ccttagatca aacggttcca cagatgatgt gttcacagtg tcatgcagag tcctaacaaa
5461 accttcagca gattttgagt ttaattactt ggtcccccca acagttgagt caagaactaa
5521 gcccttttca ataccaatac tcacaattgg agaaatgaca aattcaaggt ttcccttgcc
5581 cattgacatg ttgtacacca gcccaactga aaatttggta gtccaacccc aaaatggcag
5641 gtgcacgact gaaggtgaac tgttgggcac tactcaattg gtaactccaa gcatttgctc
5701 acttcgtgga gcgatcactg gtcacgaagg caatgatgat gatcacaaat ggcacatgac
5761 agtcacaagc cccaatggtg ccgcttttga cccaacagag gatgttcctg ctccccttgg
5821 taccccagac ttcacaggtg atatatatgg agtgctctct caaagagaca gaaacattaa
5881 tcctggccaa actgcccccg caaacagagc ccatgaagct gttgtttcta caagaagtaa
5941 caagttcaca ccaaaattgg gctctgtaat gattgctacc tgggaaacta cagatgttct
6001 tcaacaacct accaaattca cccctgtagg cctagagagt cccaatcact acaaccagtg
6061 gcaactacca aattattcag gggcactgac actcaacatg gggctcgccc catctgtgtt
6121 cccaacatac cccggcgagc aaattctttt cttccgctcg ttcatcccac tcaaaggagg
6181 ttatggaaat tcagcaatag attgtcttgt gccacaggaa tggatccaac atttctatca
6241 agaatcagcc ccctcacaaa ctgatgtggc tttaatcagg tatgtcaacc ccgaaacagg
6301 acgcgtcctg ttcgaggcca aattgcacag acaaggattc atcaccgtcg ccaaaaccgg
6361 tgacagcccc atcaatgtac ctgctaatgg ttatttcaga tttgactctt gggtcaaccc
6421 attttactca cttgccccca tgggaactgg gaatgggcgc agaaggaatc agtaatggca
6481 ggagctttta tagcaggatt ggctggtgac atgctcacaa acactgtagg gtctttagtt
6541 aatgcaggtg ctaatgctat taatcagaaa gttgattttg aaaataataa atatttacaa
6601 aatgcatcat ttgctcatga taaagaaatg ctaaatgcac aagttgaggc aacaaagaag
6661 ctgcaggccg acatgataaa catcaagcaa ggagtcttga ccgctggcgg cttttctcct
6721 actgatgcgg cccgtggagc tataggagct cctatgacaa aagttttaga ctggaatggg
6781 acaaggtact gggcaccaaa tgccaccaca acaacttcaa tgtcaggtgg cttcacagga
6841 caaactgtgc acagagcccc accaaatttc aaaaccaatc agactcccaa aagtataccc
6901 agtagtggat catcagtgag atcaaattca acccaactca ccagtctgag ctctcactcc
6961 tctggttcat cacgatccag tggatccaca gtgatcagct ccttaccgtc ctccagtagg
7021 actggggagt gggtcaggca acaaaaccgc aatctggaac catacttacc tggatccctc
7081 agaacagctt atgtcacacc accatcaagt gcagcctcta gctcaggcac agtctcaacc
7141 gtgcccaaag gtgttttgga ctcctggaga tctgcgttta acacgcgcag acagccgcta
7201 tttgcacacc ttcgtagaag gggg
//