Typing tool
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Typing tool
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Complete norovirus genomes
| MG495077 | GII.27 | |
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| GII.P27 |
ORF1: 1..4875
ORF2: 4856..6487
ORF3: 6487..7251
LOCUS MG495077 7259 bp ss-RNA linear VRL 16-JAN-2018
DEFINITION Norovirus GII strain Hu/PE/2012/GII.PNA1-GII.NA1/Loreto0959
nonstructural polyprotein gene, partial cds; and VP1 and VP2 genes,
complete cds.
ACCESSION MG495077
VERSION MG495077.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7259)
AUTHORS Chhabra,P., Olortegui,M.P., Kosek,M., Castro,C.J., Marine,R., Ng,T.
and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2017) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7259
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/PE/2012/GII.PNA1-GII.NA1/Loreto0959"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Peru"
/collection_date="05-Nov-2012"
/note="genotype: GII.PNA1-GII.NA1"
CDS <1..4875
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AUD54965.1"
/translation="PPPNGEDIVIKYTKKEEKISGVPTVSTVDISPLHDTAYSVPPLD
QREKVDAKEPLTGSILEMWDGEIYHYGLYVERGMVLGVHKPPSALSLARIELTPLSLY
WRTVYTPPYLVAPDTLKKLHGESFPYTAFDNNCYMFCCWVLDLNDSWLNRKHVSRTTG
FYRPYQEWNRKPLPTMDEGKLKKVANVLLCGLSGLFTRPIKDLIGKLRPLNILNIISN
CDWTFPGVVEALILLAELFGIFWTPPDISAFVASLLGDYELQGPEDIATEIVPVVLGG
IGMVLGFTKERIGRLLSSAASSLRACKEIGNYGIEVVKLIMKWFFPTKNEVNEMEMVR
AIEDAVLDFEAIENNHMTTLLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTIN
SLLARIAAARSLVHRAKEEMSSRMRPVVIMLSGRPGIGKTHLARDLAKKMAATLTGDQ
RVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVQDALRLQELADTCPLTLNCDRIENK
GKVFDSDTIIITTNLQNPAPLDYVNFEACSRRVDFLVYADSPTVDKAKRDFPGQPDMW
KDAFKSDFSHIKLQLAPQGGFDRNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFD
LQGPELPLYNFDHNKVAAFRKLAADNKYGFMETIKAGNKLKEVKTLDQFKEAVKDIRI
KPCRIIYNSTAYDLESSGSGRVTVKRVGDHKVQAHNELHSALNNLRKARIRYYVKCFQ
EMIYSLLQIAGAAFVTSRMTQRMNINKLWAKPERHVETPVEPPTPPIEDWTINPIDTV
QEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEE
LAIAKATEENFCEEEEVKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKG
KLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPPGITEA
FGVPMNQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVTTILIKRTTGELMPL
AARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVIG
VHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGSAPKLSTKTKFWRSS
NEPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPATLEAAKETI
CNVLEQTIDPPQKWSYTQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKAN
LMFEQRKHMQPVYTAALKDELVKTSKIYDNIKKRLLWGSDLGTMIRCARSFGGLMDEM
KANCVRLPVRVGMNMNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRCILGVALEIMVR
FSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAMS
EVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEGPLV
IKESLEGLTFLRRDICRDPAGWYGKLDQSSIMRQMYWTKGPNHEDPNETMIPHSQRPI
QLMSLLGEAALHGPAFYKKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGD
RNLAPEGVNEDGVE"
CDS 4856..6487
/note="ORF2; major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AUD54966.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ
TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
IDVQVIMAGNAFTAGKIIFAAVPPHFPIDNISPPQITMFPHIIIDVRTLEPVNIPLPD
VRNSFFHYSQNNEPRMRLLAMLYTPLRSNGSADDVFTVSCRVLTKPSADFEFNYLVPP
TVESRTKPFTIPILTIGEMTNSRFPVAIDMLHTSPTDNFIVQPQNGRCTLDGELQGTT
QLVASNICAFRGSISGHENNGDQHQWHFSITNPNGTPFDPTEDVPAPLGTPDFKGQLY
GVISQRNREGSSGNGNQKANRSHEGVISTVAPRFTPKLGSVMIGTWTTDDIQDQPSRF
TPVGLNDDDNYKQWELPNYSGALTLNMGLAPSVFPTYPGEQLLFFRSYIPMKGGYGSP
YIDCLIPQEWISHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGYITVAKTGDS
PINVPANGYFRFDSWVSQFYSLAPMGTGNGRRRIQ"
CDS 6487..7251
/note="ORF3; minor structural protein; minor capsid
protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AUD54967.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANVINQKVDFENNKYLQNA
SFAHDKEMLNAQVEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTSQVMHRPTPNLKTNQAPKSIPSSGSSVRSNSTQLTSLSS
HSSGSSRTSGSTAISSLPSSSRTRDWVNQQNLNLEPHLPGSLKTAFVTPPSSTASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESSA"
3'UTR 7252..7259
ORIGIN
1 ccaccgccca atggagagga cattgtcatc aagtatacca aaaaggagga gaagatcagc
61 ggagtaccca ccgtctcaac tgtggacatt tcccccctgc atgacaccgc atatagtgtc
121 ccccctctag accagagaga gaaggtggac gcaaaggaac ccttaacagg ttcgatactt
181 gagatgtggg acggtgaaat ctaccactat ggcctttatg tggagagggg tatggttcta
241 ggcgtgcaca aaccaccatc cgctttgagc ttggcgcgta tcgaactaac tcctctctcc
301 ctctactgga ggactgttta cacaccaccc tacctagtcg ctccagacac cctcaagaag
361 ctccatggtg agtctttccc ctacacggcc tttgacaata attgctatat gttttgctgc
421 tgggtactag acttgaatga ctcatggctt aacaggaagc atgtgtcaag aaccacgggt
481 ttctacagac cctaccaaga atggaatagg aagcctttgc caaccatgga tgagggcaaa
541 ctcaagaaag tggccaacgt gttgttatgt ggcctctccg gtctgttcac caggcccatc
601 aaggatctca taggcaagtt gagaccgcta aacatactca acatcatatc taactgtgat
661 tggaccttcc ccggtgttgt tgaagccctc atcctgcttg cagagctctt tggcatcttc
721 tggacccctc cagacatatc agcttttgtc gcctccttgc tgggtgacta tgagttgcaa
781 ggccctgagg acatcgcaac cgagatcgtg cctgtcgtcc tcggtggtat tggcatggtt
841 cttggtttca ctaaggagag gattggccgg ctattgagct cagccgcatc atcgctacga
901 gcatgtaaag agattggcaa ctatgggata gaggtggtta aactaataat gaaatggttc
961 ttccccacca aaaatgaagt caatgagatg gagatggtga gggcaataga ggatgcagtg
1021 cttgattttg aggcaataga gaacaaccac atgacaaccc tgctcaaaga caagaacagc
1081 ttggccactt tccttagagc gctggatatg gaagaagaga aggcgcgaaa actgtcaacc
1141 aaatccgcgt ccccagacat agttggtacc ataaactccc tcctagccag aattgctgcc
1201 gccaggtccc tagtccacag ggccaaagaa gaaatgtcat ctaggatgcg tcctgttgtc
1261 atcatgttat ctggacgacc tgggataggg aagactcact tggcacgtga tctggccaag
1321 aagatggcgg cgactctcac aggtgaccag agagtagggc tcgtcccaag aaacggtgtt
1381 gaccactggg atgcgtacaa aggagagagg attgttcttt gggacgatta tggcatgagt
1441 aaccctgtac aggatgctct tcgccttcag gagcttgcgg acacctgccc tctgacactc
1501 aactgtgaca gaatagaaaa caagggaaaa gtgtttgaca gtgacaccat aatcatcaca
1561 accaacttgc aaaatccggc cccacttgat tatgtgaact ttgaggcatg ttcccgccga
1621 gtcgacttcc tcgtctatgc ggattcccca acagtcgaca aagcaaagag ggacttccct
1681 ggccaaccag acatgtggaa ggatgccttc aaatcagatt tctcacatat aaagttacaa
1741 ttggcaccac aggggggatt cgacaggaac gggaacaccc cgcacggtaa gggggtcatg
1801 aaaactctca ccacacactc cctaatagcc agagccaccg ggctgcttca tgaaagactg
1861 gatgaatttg acctgcaggg cccagaatta ccactgtaca attttgacca caacaaggtg
1921 gccgctttca ggaagcttgc agctgacaac aaatatggtt tcatggagac cataaaggca
1981 ggcaacaagt tgaaggaagt taagaccctt gaccagttca aagaggctgt gaaggacata
2041 cgcataaaac cttgcagaat aatctacaat tccacggcct atgatctaga atcaagtgga
2101 tctgggagag tcactgtgaa gagagtgggg gaccataaag tccaagccca caatgagctc
2161 cattctgccc ttaacaacct acgcaaggcc aggattaggt actatgttaa atgcttccaa
2221 gagatgatct attcgctcct ccaaattgct ggagcggctt ttgtcacctc gaggatgaca
2281 cagaggatga acatcaacaa gctgtgggcc aagcctgaga ggcacgtgga aactcccgta
2341 gaacccccaa ccccaccgat tgaggactgg actataaatc caattgacac agtccaggaa
2401 ggcaagaagg gtaaaaacaa gagtggcagg ggcaagaaac acactgcatt ctccagcaag
2461 ggtctcagtg atgaggagta tgatgaatac aagagaatca gagaagagag acaagggaaa
2521 tactccatag aagaatacct ccaggacagg gaccgatatt atgaagaatt ggccatagcc
2581 aaagccactg aagaaaattt ctgtgaagag gaagaggtta aaataaggca gagaatcttc
2641 aggccaacca gaaaacaacg caaagaggag agagcctcat tgggtctggt cacaggcagt
2701 gaaatccgga agaggaaccc agatgacttc aaaccgaaag gaaaactgtg ggctgacgat
2761 gaccgcagcg tcaactacaa tgagagaata gactttgagg cccctcccag cctgtggtcc
2821 agaatagtca actttggttc gggctggggc ttttgggttt cttccaacct gttcatcacc
2881 tccacacatg tcatcccacc gggcataacg gaggcctttg gagtgccaat gaaccaaatc
2941 caaatccaca gaagtgggga gttttgcaaa atgagattcc ctaaagccat caggcctgat
3001 gtgtctggaa tgatcctcga ggagggagca cctgaaggga cagtaacaac catactgatt
3061 aagagaacaa ctggagagct catgccattg gcagcccgca tgggtaccca cgccaccatg
3121 aaaatccagg gaaggatgat cggaggccag atggggatgc tcctcacagg atctaatgct
3181 aagaacatgg acctcggcac tgtccccggt gactgtggct gcccatatgt ctacaaaaga
3241 ggcaatgact gggtggtcat aggggtgcac accgctgctg ccagaggcgg caacacggta
3301 atatgtgcca cccagggtcc agatggtgaa gccacactcg aggggggaga caaccacggg
3361 acatactgtg gggcaccaat cctgggtcca gggagcgctc caaaactcag cactaaaacc
3421 aaattctgga ggtcctccaa tgaaccactc ccccccggca cgtatgaacc tgcctacctt
3481 ggtggaaaag atccaagagt caaaggtgga ccttcactac aacaagtcat gagggaacaa
3541 ctcaagcctt tcaccgctcc tcgggggaaa ccgccgagac cagcaaccct ggaagccgcc
3601 aaggaaacca tctgcaacgt gcttgagcag accattgacc caccccagaa gtggtcatac
3661 acacaagcat gtgcctctct ggacaagaca acatcaagtg gacaccccca ccacaaaaag
3721 aaaaatgaca actggaacgg tgaatccttt actggcgttc tggccgatca agcatcaaaa
3781 gcaaatctca tgtttgaaca aagaaaacac atgcaacctg tgtacacagc cgcgctcaag
3841 gatgaacttg ttaagaccag taaaatctat gacaacatca aaaagaggct cttgtggggg
3901 tctgatcttg gcacaatgat ccgctgtgca aggtcatttg gagggctcat ggatgaaatg
3961 aaggccaact gtgtgagact tcccgttagg gttggaatga acatgaatga agatggaccc
4021 attatctttg agaaacattc aaaatacaaa tatcattatg atgctgacta ctccagatgg
4081 gattcaaccc aacaaaggtg catcttgggt gtcgcattgg aaatcatggt taggttctca
4141 gccgaacctg aattggcaca aatagtggct gaggaccttt tgtcgcccag tgtggtggat
4201 gttggcgact tcaagatcac aataaatgaa ggtctaccct cgggtgtccc ctgcacatcc
4261 caatggaatt caattgctca ctggctatta acactgtgtg ccatgtcaga agtatcaggg
4321 ctatcccctg acgtggtgca atcaaattct tgtttctcct tctatgggga tgacgagata
4381 gtcagcacag atataaaatt ggacccacaa aaattaacag ataagttgag agagtatggg
4441 ctaattccaa cccgacctga caaaactgaa ggaccactcg tgattaaaga gagtttggag
4501 ggtttgacat ttctaaggag agacatatgt agggacccag ctggctggta tggcaagctc
4561 gaccagtcat caatcatgag gcaaatgtac tggaccaaag gacccaacca tgaggacccc
4621 aatgaaacaa tgatcccaca ctcccagaga ccaatacaac tgatgtccct tctcggtgag
4681 gctgcccttc atgggcccgc attctacaaa aagattagca aattagtcat caccgagctc
4741 aaagaaggtg ggatggattt ttatgtgccc aggcaagaac caatgttcag gtggatgaga
4801 ttctctgatt tgagcacgtg ggagggcgat cgcaatcttg ctcccgaagg tgtgaatgaa
4861 gatggcgtcg aatgacgccg ctccatctaa tgatggcgca gccggtctcg taccagagat
4921 caacaacgag acaatggctt tggaaccagt tgcaggagga gcgatcgccg cccccctaac
4981 tggacaaaca aatttcattg atccctggat tagaaataat tatgtacaag cgcccaatgg
5041 tgaattcact gtgtccccaa ggaattcccc tggtgaaatt ttgctcaatt tagaattagg
5101 ccctgaactt aatccattct tggcccattt atctagaatg tataatggat atgctggtgg
5161 cattgatgtc caagtcatca tggcgggcaa cgccttcacc gctggaaaga tcatcttcgc
5221 agcagtgcca cctcattttc ctattgataa catcagcccc ccacagataa ccatgtttcc
5281 ccatattata atagatgtga gaacccttga acctgtgaac attcccctgc ctgatgtcag
5341 aaatagcttc ttccattaca gccagaacaa cgagccccgc atgagattgt tggccatgtt
5401 gtatacccct ctcagatcaa atggctctgc agacgatgtc ttcacagtat cctgcagggt
5461 cctgaccaag ccttctgcag attttgaatt taattatttg gttcccccaa ctgttgagtc
5521 cagaactaaa cccttcacca taccaatact cacaattgga gaaatgacaa attcaagatt
5581 ccctgtggcc attgacatgc tgcacaccag ccccactgac aattttattg ttcagccaca
5641 aaatggcagg tgcaccctgg atggtgagct gcaaggcacc actcagttgg tcgcttcaaa
5701 catatgtgcc ttcagggggt ccatctcagg gcacgagaac aatggagatc aacatcagtg
5761 gcacttcagt atcaccaacc ccaatggcac tccatttgac ccaactgaag atgtgcccgc
5821 cccacttggg accccagatt tcaaaggtca actctacggg gtcatctccc aacggaatag
5881 agaaggaagc tctggtaatg gcaaccaaaa ggccaatagg tcccatgagg gagtgatttc
5941 aacagtcgca ccaagattca caccaaaatt agggtcggtc atgattggca cttggaccac
6001 tgatgatata caagaccaac catctagatt caccccagtt gggctgaatg atgatgacaa
6061 ttacaagcaa tgggaattgc caaattattc tggggctctc accctcaata tggggttggc
6121 accttctgtc ttccccacct accctggtga acaacttctt ttcttccgct cctacatacc
6181 aatgaaggga gggtacggca gtccttacat tgattgtctt ataccccaag agtggatttc
6241 ccacttttac caggaatcag ccccttcaca aacagatgtg gctttaatca ggtatgtgaa
6301 ccccgacaca ggacgcgtcc tgttcgaggc caaattgcac agacaaggat acatcaccgt
6361 cgccaagact ggtgacagcc ccattaatgt gcccgcaaat ggttacttca ggtttgattc
6421 ttgggttagt caattttact ctcttgcccc catgggaact gggaacgggc gcagaaggat
6481 tcagtaatgg ctggagcttt tatagcagga ttggctggtg acatgctcac aaacactgta
6541 gggtctttag ttaatgcagg agctaatgtt atcaatcaga aagttgattt tgagaataat
6601 aaatatttgc aaaatgcatc atttgctcat gataaagaaa tgttgaatgc acaagttgag
6661 gcaacaaaga aactgcaggc tgatatgatt gccattaaac aaggggtctt gaccgctggc
6721 ggtttttccc ccactgatgc agcccgcggg gctattaatg cccccatgac aaaagttttg
6781 gattggaacg gaacaaggta ctgggcacct aatgccacca ccacaacatc aatgtcaggt
6841 ggtttcacaa gccaggtcat gcacaggccc acaccaaatc ttaagacaaa ccaggccccc
6901 aaatccatac cgagtagtgg gtcttcggta agatccaact caacccaact caccagtctg
6961 agctcgcact catccggatc atctcggacc agcgggtcta cagctatcag ttccctaccg
7021 tcttccagca ggactaggga ttgggttaac cagcaaaacc ttaatttgga accacatttg
7081 cctgggtctc ttaaaacagc ttttgtcact ccaccatcta gtacagcctc tagctcgggc
7141 acagtctcaa ccgtgcctaa gggtgttttg gactcctgga catctgcgtt taacacacgc
7201 agacagccgc tattcgcaca ccttcgtaga aggggggagt caagtgcata gtgaaaaga
//