Typing tool
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Typing tool
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Complete norovirus genomes
| MG049693 | GI.4 | |
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| GI.P4 |
ORF1: 1..5358
ORF2: 5342..6976
ORF3: 6976..7602
LOCUS MG049693 7602 bp ss-RNA linear VRL 28-OCT-2017
DEFINITION Norovirus GI isolate CYY1, complete genome.
ACCESSION MG049693
VERSION MG049693.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7602)
AUTHORS Yen,J.-B., Wei,L.-H., Chen,L.-Y., Chen,L.-W., Hung,C.-H.,
Wang,S.-S. and Chang,P.-J.
TITLE Subcellular localization and functional characterization of GII.4
norovirus-encoded NTPase
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7602)
AUTHORS Yen,J.-B., Wei,L.-H., Chen,L.-Y., Chen,L.-W., Hung,C.-H.,
Wang,S.-S. and Chang,P.-J.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2017) Graduate Institute of Clinical Medical
Sciences, Chang-Gung University, 6 West, Chia-Pu Road, Puzi,
Chiayi, Taiwan 613, Taiwan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7602
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="CYY1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/geo_loc_name="Taiwan"
/collection_date="12-Jan-2009"
/collected_by="Chang-Gung Memorial Hospital at Chiayi"
CDS 1..5358
/note="ORF1; contains Nterm, NTPase, P22, VPg, Protease,
and RNA polymerase"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATN44701.1"
/translation="MMMASKDVVAATAASAENTSDNSESIKNRFFTRLKNLGSNNKPI
KIENTHMALDLISRGPSPAPQERPPKDQRDKPPRNVTETQQAMGWIDPPVDQNLPTWE
ELSQTEKQEILKNNSNWFDAGGLAPASIPSGYVKNTEQQPPDHQVKWSVNNGVDLGVD
SLTTVPGPTWNLCPMPPIDQRNNGPAKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVH
SPQAAFSIARITIHPIAAWWRVCYVPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFC
CRILNLQDTWLERRLVTSSRFNHPAQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVPK
PFKDLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPD
MHLQGPEDLAKDLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA
VLKKYFFGGDQTEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKA
RKLSVRHADPHVVSTTNALISRTSLARPALAKAQAEMTNRVKPVVIMMCGPPGIGKTK
AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA
IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA
PDVEQTRRTNPGDTGALKDCFKSDLSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR
LLIQAVALTMERQDEFQMQGQVYDFDADRVSAFTSLARANGLGLISMASLGKKLRGVD
SVHGLKNALSGYTITPCSIKWQARVYDIESDGTNVHIKENTSAQTQRQQSIDTAALAL
TRLKAARAAAYAACIQSAITTILQMAGSAIVINRAVKRMFGAHPSTIALEGPPREHRC
RAHLAKAAGGGPIGHDDVIDKYGLCETEEEGTSEEMNVELPTATSEGKNKGKTKKGRG
RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG
IGETEMEIRHKIFYKSKKGRQSERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVD
YNEKLSFEAPPTLWSRVVRFGSGWGFWVSPTVFITTTHVIPSGVREFFGEPIESIAIH
RAGEFTQFRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK
IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT
VVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPA
YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPT
PWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMYELGKSMKPL
YTAALKDELVKPEKVYQRIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVG
MNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVA
KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQS
QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLR
RTISKGAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH
GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG
V"
CDS 5342..6976
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ATN44702.1"
/translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA
TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ
PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE
MSKIPNSSTQSNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS
GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
LPQEYITHFISEHAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR"
CDS 6976..7602
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="ATN44703.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN
SFNHDKEMLGYQMEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG
VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPVQRTASWVQSQNSS
RSWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR"
ORIGIN
1 atgatgatgg cgtcgaaaga cgtcgttgca gctactgctg ctagtgctga aaacactagt
61 gacaatagtg aatctataaa gaaccgcttc ttcacaagat tgaagaattt aggttctaac
121 aataaaccta taaaaattga aaacacccat atggccctcg acttgattag tagagggcca
181 tctccagccc cacaagaaag gccccccaaa gatcagaggg acaaaccccc aaggaatgtg
241 actgaaactc aacaggcaat ggggtggatt gacccccccg tggatcagaa cctaccaacc
301 tgggaggaat tgagccaaac agaaaaacaa gagatactca agaacaattc aaactggttt
361 gatgctggtg gactggcacc agctagtatc ccttccggtt atgtgaaaaa cacagagcaa
421 caaccccctg accaccaggt caaatggagt gtaaacaacg gggttgatct gggggtggac
481 agtttaacta ctgtgccagg cccaacatgg aacctgtgcc ccatgccacc aattgaccaa
541 cggaacaatg gcccggcaaa agagccactt attggtgata tgatagaatt ctatgaggga
601 cacatttacc attatgcaat atatattggc caaggaaaaa ctgttggggt ccactcacct
661 caagcggcct tttcaatagc cagaataact atacacccca ttgctgcttg gtggagggtt
721 tgttatgtgc caacgcctga tcagagatta aattatgacc aactcaaaga gcttgagaat
781 gagccatggc catatgctgc agtcaccaat aattgctatg agttctgctg cagaatcctc
841 aacctgcagg atacttggtt ggagcgccgc ctagttacgt ccagtcgttt taaccatcca
901 gcacaagact ggtctaggga cacgcctgac ttccaacaag atagcaaact agaaatagtc
961 agggatgctg tgcttgctgc aattaatggc ttggtgccaa aaccctttaa agacctccta
1021 aataaactta agccactcaa cgtgcttaac ctactctcca actgcgattg gacatttatg
1081 ggagtagtgg agacaataat attacttatg gaactgtttg ggattttctg gaacccccct
1141 gatgtgtcca gtttcatagc ctcactacta cccgatatgc atctgcaagg accagaagat
1201 ctggctaaag atttgatacc actggtgttg gggggtgtag gacttgcaat tgggtttacc
1261 aaggacaagg ttacaaaggt catgaagagc gctgttgaag gacttagggc agccacacaa
1321 ttgggtcagt atggcttaga gatatttgca gtcttaaaga aatacttctt tggcggagac
1381 caaacagaga agactttaaa ggacattgag acagccgtaa ttgacatgga ggtcatttca
1441 acaactgctg tcactcaatt agtcagggac aagcaggctg cccgaaccta catgaacatc
1501 ttggatgccg aagaagaaaa ggcaagaaag ctttcagtca ggcatgcaga cccccatgtc
1561 gtgtccacga ctaatgcctt gatctcacgc acttctttgg ctcgccctgc acttgctaag
1621 gcacaagctg agatgactaa cagagttaaa ccagtagtaa taatgatgtg tggccctcca
1681 ggcataggca agacaaaggc agctgagtac cttgctaaga gattggctaa tgagatacgg
1741 cctggaggaa aagtgggtct cgtgccaaga gaggctgtgg atcactggga tggatatcac
1801 ggtgaagagg ttatgctatg ggatgattat ggtatgtcaa aaatagctga tgattgtaat
1861 aagttgcagg ccatagccga cacagctcca ctcaccttga attgtgaccg gattgagaag
1921 aaagggttac agttcgtctc tgatgccata gtgataacaa caaatgcccc aggcccagcc
1981 cctgttgact ttgtcaatct tggcccagtg tgccgacggg tagacttcct ggtttattgc
2041 actgcacctg acgttgaaca aacacgtcgc accaaccctg gagacactgg agcccttaag
2101 gattgcttca aaagtgacct ctcccatcta aaaatggagt tggccccaca gggcggattt
2161 gataatcaag ggaacactcc atttggcaaa gggaccatgc ggcccaccac gttaaaccgt
2221 cttctcatac aagctgtggc gctaaccatg gagcgtcagg atgaattcca gatgcaaggt
2281 caagtgtatg attttgatgc tgacagggta tccgctttca ccagtttagc gagagccaat
2341 ggtctgggcc tcattagtat ggcctctcta ggaaagaaat tgaggggtgt ggactcagtc
2401 catggcctca agaatgcatt atcaggctac accataaccc cttgtagtat aaaatggcaa
2461 gccagagtgt atgacattga atcggatggc actaatgtac acataaagga aaacacctca
2521 gcccagacac aacgccagca gtcaattgac acagcagctc tagcactcac tagactcaag
2581 gcagcacggg cagcagcgta tgcagcttgc atacaaagcg caataacaac tatcctacag
2641 atggctgggt cagccatcgt tataaatcgt gctgtcaaaa ggatgtttgg ggcacaccca
2701 agcaccatag cccttgaagg gccaccaagg gaacaccggt gtagagctca cctggccaaa
2761 gctgcaggtg gtggaccaat aggccatgat gatgtcattg ataagtatgg tctatgtgag
2821 actgaagaag agggcaccag tgaggagatg aatgtggagc ttcccaccgc cacttctgag
2881 ggtaaaaata aaggtaaaac caagaaagga agaggcagaa gagccaacta caatgctttt
2941 tcaaggcgag gtctgagtga tgaagaatac gaggagtata agaagatcag ggaagaaaag
3001 aatggtaact acagtattca ggagtacctt gaagacagac aacgctatga agaagaactc
3061 gcagaagtgc aagctggtgg tgatggaggc attggtgaga cagaaatgga gatccgacac
3121 aagatcttct ataaatccaa aaagggccgc caaagtgaac gccgccagtt aggattagtc
3181 actggtagtg acattagaaa gagaaaacca attgattgga ccccccccaa gaatgattgg
3241 gcagatgata atagggaagt ggattacaat gaaaaactca gttttgaagc cccaccaacc
3301 ctctggagcc gagttgtgag atttggctct gggtggggct tttgggtgag cccgactgtt
3361 tttatcacca ccacccacgt tataccatct ggagtgcgtg aattctttgg agaacccatc
3421 gaatccattg caatccaccg tgctggtgaa tttacacaat tcaggttttc acgtaaagtc
3481 cgcccggatt tgactggaat ggtcttggag gaaggctgcc ctgagggtgt cgtgtgttcc
3541 atcctcatta aacgcgactc tggtgagctg ctaccccttg ctgttcgaat gggcgctata
3601 gcgtccatga agatccaggg gaggttagtg catggtcaat ctgggatgct gcttactggg
3661 gccaacgcta aagggatgga cttaggtacc ctaccaggtg attgtggtgc cccttatgtg
3721 tacaagagga acaacgactg ggtggtttgt ggtgtacatg cagctgccac gaaatcaggc
3781 aacactgtag tgtgtgctgt ccaggctggg gagggtgaaa ccaccttaga gggaggtgat
3841 aaaggtcact atgctggtca tgagataatc aagcacagta agggcccagc tttatcaacc
3901 aagaccaagt tctggaggtc aacccctgaa ccactgccgc caggtgttta tgaaccagca
3961 taccttgggg gccgtgaccc aagggtaaaa ggtggacctt ccctacaaca agtcctgcgt
4021 gaccagctga aaccgtttgc tgagccacga ggtcgaatgc cagaacctgg tctacttgag
4081 gcagccgttg aaactgtcac atccatgctt gaacaaacaa tggatacacc aaccccttgg
4141 tctttctctg atgcatgtca gtcacttgac aaaaccacaa gttcggggca cccataccat
4201 aaaaggaaaa atgatgattg gaatggaact tcatttgttg gggagcttgg agaacaggcg
4261 gcacatgcca acaacatgta tgagttaggc aagtccatga aaccacttta cactgcagcc
4321 ctaaaagatg agttagtcaa gcctgagaaa gtctatcaga ggattaagaa aaggctcctc
4381 tggggtgctg atctctcaac agttataaga gctgccagag cctttggacc attttgtgat
4441 gccataaagc ctcatgtcat taaactccct atcaaagttg gtatgaactc catagaagat
4501 ggcccaatga tttacgcaga acatgcaaag tataagaatc attttgatgc agattattcg
4561 gcctgggatt ctacacaaaa tagacagatc atgactgagt cctttgcaat catgtgccgc
4621 ctcacggcat caccagaatt ggcctctgtt gtagccaaag atctacttgc gccttcagag
4681 atggatgttg gggactacat catccgtgta aaagaaggtt tgccatcagg atttccttgc
4741 acttcacagg tgaacagtat aaaccattgg ctaatcacac tgtgtgctat gtctgaagtc
4801 acaggcttat cacccgatgt catacaatcc cagtcttact tttctttcta tggtgatgat
4861 gaaatagtct caacagatat tgattttgac cccgcccgcc tcactcaggt gcttaaagaa
4921 tatgggttga gacccacccg accagacaag tcagaaggac ccatcatact tagaagacag
4981 gtggatggcc ttgttttctt aaggaggaca atctcaaaag gtgctgcggg cttccagggg
5041 aggctagaca ggggctcaat tgaaaggcag ctctggtgga ctcgaggtcc taaccatgat
5101 gaccccagtg agactctaat cccacacccc cagaggaaag ttcagcttat atccctcctt
5161 ggtgaggctt ccctccatgg tgagaaattt tacaggaaaa tctccagtaa agttatacag
5221 gagataaaga ctggtggttt ggaaatgtat gtaccaggct ggcaggccat gttccgctgg
5281 atgcgcttcc atgacctcgg attgtggaca ggagatcgca atctcctgcc cgaattcgta
5341 aatgatgatg gcgtctaagg acgctacacc aagcgcagat ggcgccactg gcgccggcca
5401 gctggtaccg gaggttaata cagctgaccc tatacccatt gaccctgtgg ctggctcctc
5461 tacagcactt gccactgcag gccaagttaa tttgattgat ccctggataa tcaataattt
5521 tgtgcaagcc ccccagggtg aattcacaat atccccaaac aatacccccg gtgatgtgct
5581 ttttgatttg cagttaggac ctcatttaaa ccctttcctc tcccatctct ctcagatgta
5641 taatggctgg gtgggcaaca tgcgagtgcg tgttgtcttg gctggtaatg ctttcacggc
5701 tgggaaggtt ataatttgtt gtgttccccc tggttttcaa tctcgtactc tttccatagc
5761 tcaggctact ttattccccc acgtcattgc tgatgttagg acccttgacc ctgtagaagt
5821 gcctcttgaa gatgtcagga acgtgttgta tcataataat gacacccaac ctaccatgcg
5881 cctcctttgc atgttgtaca ctcctctccg caccggggga gcgtctggtg ggactgattc
5941 cttcgtggta gctgggcgtg tacttacttg cccaggccct gactttaact tcttattctt
6001 ggtccctcct acagtcgagc aaaagactcg ccctttcact gtacccaata tccctttgaa
6061 gtatctgtct aactccagaa tcccaaaccc cattgaaggt atgtcattgt cacctgacca
6121 gactcaaaat gtccaatttc aaaatggcag gtgcacaatc gatggtcaac ccctcgggac
6181 tacacctgtc tcggttagcc agttatgtaa gtttaggggt aggattacat ctggacagaa
6241 ggtgctcaat ttgacagagt tggatggttc accttttatg gcctttgctg cccctgcccc
6301 tgcgggcttc ccagatcttg ggtcctgtga ttggcatatt gagatgagta aaatcccaaa
6361 ttctagcacc cagagtaatc caatagtggt caattctgtc aagcccaata gtcaacagtt
6421 tgtccctcac ttgtcaagca tcacccttga tgacaatgtt tctagtgggg gtgattatat
6481 cggtactata caatggacct ctcctccttc tgattctggc ggagccaata caaacttttg
6541 gaaaatccct gactatgggt ctagcttggc tgaagcttca cagctggccc ccgctgtcta
6601 tccacctggt ttcaatgaag tgattgtgta ttttatggca tctatacctg gccccaatca
6661 atctgggtcc cctaacttgg tgccatgcct actcccccag gaatatataa cacatttcat
6721 tagtgagcac gcccccattc agggtgaggc tgccttactc cattatgtgg acccagacac
6781 caatcgtaat ttgggtgagt ttaaattgta tcctggtggt tatttaacct gtgttcctaa
6841 tagttctagt actggacctc aacagcttcc tcttgatggt gtttttgtct ttgcttcttg
6901 ggtctctaga ttttatcaat taaagcctgt gggaacagcc ggaccggcta gaggtaggct
6961 tggtgtccgt agataatggc ccaagccatt ataggagcca ttgccgcctc cgcagccggt
7021 agcgcccttg gtgctggcat ccaggctggt gctgaagctg cgttgcaggc acagagatat
7081 caacaagatc tgactttgca gcaaaattct tttaatcatg ataaggaaat gttaggttat
7141 caaatggaaa tgtccaacaa gttgctagct aaaaatctta acacccgcta ttctcttctc
7201 caggcgggtg gcctctcatc ctctgatgcg gctagggctg tagccggggc ccccgtcact
7261 aggttggtcg actggggggg agtgcgtgtt gcggcacccc aatcatctgc caccacattg
7321 agatctggta attttatggc tgtgccactc ccagctcagc caaaacagaa gccccttgcc
7381 agtgaaggtt attctaaccc tgcttatgac cctgtgcaac gcacagcctc ttgggttcaa
7441 tctcagaact ccagccggtc ttggtctcca taccataggc aagcccttca gactgtgtgg
7501 gtgacccccc ctggttctac ctcttcttct tctgtttcta ctgcccctcg agggtatttc
7561 aatacagata gattgcctct attcgcaaac ttgaggcgtt aa
//