Typing tool
|
Complete norovirus genomes
MG049693 | GI.4 | ||
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GI.P4 |
ORF1: 1..5358 ORF2: 5342..6976 ORF3: 6976..7602LOCUS MG049693 7602 bp ss-RNA linear VRL 28-OCT-2017 DEFINITION Norovirus GI isolate CYY1, complete genome. ACCESSION MG049693 VERSION MG049693.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7602) AUTHORS Yen,J.-B., Wei,L.-H., Chen,L.-Y., Chen,L.-W., Hung,C.-H., Wang,S.-S. and Chang,P.-J. TITLE Subcellular localization and functional characterization of GII.4 norovirus-encoded NTPase JOURNAL Unpublished REFERENCE 2 (bases 1 to 7602) AUTHORS Yen,J.-B., Wei,L.-H., Chen,L.-Y., Chen,L.-W., Hung,C.-H., Wang,S.-S. and Chang,P.-J. TITLE Direct Submission JOURNAL Submitted (02-OCT-2017) Graduate Institute of Clinical Medical Sciences, Chang-Gung University, 6 West, Chia-Pu Road, Puzi, Chiayi, Taiwan 613, Taiwan COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7602 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="CYY1" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122928" /country="Taiwan" /collection_date="12-Jan-2009" /collected_by="Chang-Gung Memorial Hospital at Chiayi" CDS 1..5358 /note="ORF1; contains Nterm, NTPase, P22, VPg, Protease, and RNA polymerase" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ATN44701.1" /translation="MMMASKDVVAATAASAENTSDNSESIKNRFFTRLKNLGSNNKPI KIENTHMALDLISRGPSPAPQERPPKDQRDKPPRNVTETQQAMGWIDPPVDQNLPTWE ELSQTEKQEILKNNSNWFDAGGLAPASIPSGYVKNTEQQPPDHQVKWSVNNGVDLGVD SLTTVPGPTWNLCPMPPIDQRNNGPAKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVH SPQAAFSIARITIHPIAAWWRVCYVPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFC CRILNLQDTWLERRLVTSSRFNHPAQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVPK PFKDLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPD MHLQGPEDLAKDLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA VLKKYFFGGDQTEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKA RKLSVRHADPHVVSTTNALISRTSLARPALAKAQAEMTNRVKPVVIMMCGPPGIGKTK AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA PDVEQTRRTNPGDTGALKDCFKSDLSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR LLIQAVALTMERQDEFQMQGQVYDFDADRVSAFTSLARANGLGLISMASLGKKLRGVD SVHGLKNALSGYTITPCSIKWQARVYDIESDGTNVHIKENTSAQTQRQQSIDTAALAL TRLKAARAAAYAACIQSAITTILQMAGSAIVINRAVKRMFGAHPSTIALEGPPREHRC RAHLAKAAGGGPIGHDDVIDKYGLCETEEEGTSEEMNVELPTATSEGKNKGKTKKGRG RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG IGETEMEIRHKIFYKSKKGRQSERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVD YNEKLSFEAPPTLWSRVVRFGSGWGFWVSPTVFITTTHVIPSGVREFFGEPIESIAIH RAGEFTQFRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT VVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPA YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPT PWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMYELGKSMKPL YTAALKDELVKPEKVYQRIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVG MNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVA KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQS QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLR RTISKGAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG V" CDS 5342..6976 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="ATN44702.1" /translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE MSKIPNSSTQSNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL LPQEYITHFISEHAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR" CDS 6976..7602 /note="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="ATN44703.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN SFNHDKEMLGYQMEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPVQRTASWVQSQNSS RSWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR" ORIGIN 1 atgatgatgg cgtcgaaaga cgtcgttgca gctactgctg ctagtgctga aaacactagt 61 gacaatagtg aatctataaa gaaccgcttc ttcacaagat tgaagaattt aggttctaac 121 aataaaccta taaaaattga aaacacccat atggccctcg acttgattag tagagggcca 181 tctccagccc cacaagaaag gccccccaaa gatcagaggg acaaaccccc aaggaatgtg 241 actgaaactc aacaggcaat ggggtggatt gacccccccg tggatcagaa cctaccaacc 301 tgggaggaat tgagccaaac agaaaaacaa gagatactca agaacaattc aaactggttt 361 gatgctggtg gactggcacc agctagtatc ccttccggtt atgtgaaaaa cacagagcaa 421 caaccccctg accaccaggt caaatggagt gtaaacaacg gggttgatct gggggtggac 481 agtttaacta ctgtgccagg cccaacatgg aacctgtgcc ccatgccacc aattgaccaa 541 cggaacaatg gcccggcaaa agagccactt attggtgata tgatagaatt ctatgaggga 601 cacatttacc attatgcaat atatattggc caaggaaaaa ctgttggggt ccactcacct 661 caagcggcct tttcaatagc cagaataact atacacccca ttgctgcttg gtggagggtt 721 tgttatgtgc caacgcctga tcagagatta aattatgacc aactcaaaga gcttgagaat 781 gagccatggc catatgctgc agtcaccaat aattgctatg agttctgctg cagaatcctc 841 aacctgcagg atacttggtt ggagcgccgc ctagttacgt ccagtcgttt taaccatcca 901 gcacaagact ggtctaggga cacgcctgac ttccaacaag atagcaaact agaaatagtc 961 agggatgctg tgcttgctgc aattaatggc ttggtgccaa aaccctttaa agacctccta 1021 aataaactta agccactcaa cgtgcttaac ctactctcca actgcgattg gacatttatg 1081 ggagtagtgg agacaataat attacttatg gaactgtttg ggattttctg gaacccccct 1141 gatgtgtcca gtttcatagc ctcactacta cccgatatgc atctgcaagg accagaagat 1201 ctggctaaag atttgatacc actggtgttg gggggtgtag gacttgcaat tgggtttacc 1261 aaggacaagg ttacaaaggt catgaagagc gctgttgaag gacttagggc agccacacaa 1321 ttgggtcagt atggcttaga gatatttgca gtcttaaaga aatacttctt tggcggagac 1381 caaacagaga agactttaaa ggacattgag acagccgtaa ttgacatgga ggtcatttca 1441 acaactgctg tcactcaatt agtcagggac aagcaggctg cccgaaccta catgaacatc 1501 ttggatgccg aagaagaaaa ggcaagaaag ctttcagtca ggcatgcaga cccccatgtc 1561 gtgtccacga ctaatgcctt gatctcacgc acttctttgg ctcgccctgc acttgctaag 1621 gcacaagctg agatgactaa cagagttaaa ccagtagtaa taatgatgtg tggccctcca 1681 ggcataggca agacaaaggc agctgagtac cttgctaaga gattggctaa tgagatacgg 1741 cctggaggaa aagtgggtct cgtgccaaga gaggctgtgg atcactggga tggatatcac 1801 ggtgaagagg ttatgctatg ggatgattat ggtatgtcaa aaatagctga tgattgtaat 1861 aagttgcagg ccatagccga cacagctcca ctcaccttga attgtgaccg gattgagaag 1921 aaagggttac agttcgtctc tgatgccata gtgataacaa caaatgcccc aggcccagcc 1981 cctgttgact ttgtcaatct tggcccagtg tgccgacggg tagacttcct ggtttattgc 2041 actgcacctg acgttgaaca aacacgtcgc accaaccctg gagacactgg agcccttaag 2101 gattgcttca aaagtgacct ctcccatcta aaaatggagt tggccccaca gggcggattt 2161 gataatcaag ggaacactcc atttggcaaa gggaccatgc ggcccaccac gttaaaccgt 2221 cttctcatac aagctgtggc gctaaccatg gagcgtcagg atgaattcca gatgcaaggt 2281 caagtgtatg attttgatgc tgacagggta tccgctttca ccagtttagc gagagccaat 2341 ggtctgggcc tcattagtat ggcctctcta ggaaagaaat tgaggggtgt ggactcagtc 2401 catggcctca agaatgcatt atcaggctac accataaccc cttgtagtat aaaatggcaa 2461 gccagagtgt atgacattga atcggatggc actaatgtac acataaagga aaacacctca 2521 gcccagacac aacgccagca gtcaattgac acagcagctc tagcactcac tagactcaag 2581 gcagcacggg cagcagcgta tgcagcttgc atacaaagcg caataacaac tatcctacag 2641 atggctgggt cagccatcgt tataaatcgt gctgtcaaaa ggatgtttgg ggcacaccca 2701 agcaccatag cccttgaagg gccaccaagg gaacaccggt gtagagctca cctggccaaa 2761 gctgcaggtg gtggaccaat aggccatgat gatgtcattg ataagtatgg tctatgtgag 2821 actgaagaag agggcaccag tgaggagatg aatgtggagc ttcccaccgc cacttctgag 2881 ggtaaaaata aaggtaaaac caagaaagga agaggcagaa gagccaacta caatgctttt 2941 tcaaggcgag gtctgagtga tgaagaatac gaggagtata agaagatcag ggaagaaaag 3001 aatggtaact acagtattca ggagtacctt gaagacagac aacgctatga agaagaactc 3061 gcagaagtgc aagctggtgg tgatggaggc attggtgaga cagaaatgga gatccgacac 3121 aagatcttct ataaatccaa aaagggccgc caaagtgaac gccgccagtt aggattagtc 3181 actggtagtg acattagaaa gagaaaacca attgattgga ccccccccaa gaatgattgg 3241 gcagatgata atagggaagt ggattacaat gaaaaactca gttttgaagc cccaccaacc 3301 ctctggagcc gagttgtgag atttggctct gggtggggct tttgggtgag cccgactgtt 3361 tttatcacca ccacccacgt tataccatct ggagtgcgtg aattctttgg agaacccatc 3421 gaatccattg caatccaccg tgctggtgaa tttacacaat tcaggttttc acgtaaagtc 3481 cgcccggatt tgactggaat ggtcttggag gaaggctgcc ctgagggtgt cgtgtgttcc 3541 atcctcatta aacgcgactc tggtgagctg ctaccccttg ctgttcgaat gggcgctata 3601 gcgtccatga agatccaggg gaggttagtg catggtcaat ctgggatgct gcttactggg 3661 gccaacgcta aagggatgga cttaggtacc ctaccaggtg attgtggtgc cccttatgtg 3721 tacaagagga acaacgactg ggtggtttgt ggtgtacatg cagctgccac gaaatcaggc 3781 aacactgtag tgtgtgctgt ccaggctggg gagggtgaaa ccaccttaga gggaggtgat 3841 aaaggtcact atgctggtca tgagataatc aagcacagta agggcccagc tttatcaacc 3901 aagaccaagt tctggaggtc aacccctgaa ccactgccgc caggtgttta tgaaccagca 3961 taccttgggg gccgtgaccc aagggtaaaa ggtggacctt ccctacaaca agtcctgcgt 4021 gaccagctga aaccgtttgc tgagccacga ggtcgaatgc cagaacctgg tctacttgag 4081 gcagccgttg aaactgtcac atccatgctt gaacaaacaa tggatacacc aaccccttgg 4141 tctttctctg atgcatgtca gtcacttgac aaaaccacaa gttcggggca cccataccat 4201 aaaaggaaaa atgatgattg gaatggaact tcatttgttg gggagcttgg agaacaggcg 4261 gcacatgcca acaacatgta tgagttaggc aagtccatga aaccacttta cactgcagcc 4321 ctaaaagatg agttagtcaa gcctgagaaa gtctatcaga ggattaagaa aaggctcctc 4381 tggggtgctg atctctcaac agttataaga gctgccagag cctttggacc attttgtgat 4441 gccataaagc ctcatgtcat taaactccct atcaaagttg gtatgaactc catagaagat 4501 ggcccaatga tttacgcaga acatgcaaag tataagaatc attttgatgc agattattcg 4561 gcctgggatt ctacacaaaa tagacagatc atgactgagt cctttgcaat catgtgccgc 4621 ctcacggcat caccagaatt ggcctctgtt gtagccaaag atctacttgc gccttcagag 4681 atggatgttg gggactacat catccgtgta aaagaaggtt tgccatcagg atttccttgc 4741 acttcacagg tgaacagtat aaaccattgg ctaatcacac tgtgtgctat gtctgaagtc 4801 acaggcttat cacccgatgt catacaatcc cagtcttact tttctttcta tggtgatgat 4861 gaaatagtct caacagatat tgattttgac cccgcccgcc tcactcaggt gcttaaagaa 4921 tatgggttga gacccacccg accagacaag tcagaaggac ccatcatact tagaagacag 4981 gtggatggcc ttgttttctt aaggaggaca atctcaaaag gtgctgcggg cttccagggg 5041 aggctagaca ggggctcaat tgaaaggcag ctctggtgga ctcgaggtcc taaccatgat 5101 gaccccagtg agactctaat cccacacccc cagaggaaag ttcagcttat atccctcctt 5161 ggtgaggctt ccctccatgg tgagaaattt tacaggaaaa tctccagtaa agttatacag 5221 gagataaaga ctggtggttt ggaaatgtat gtaccaggct ggcaggccat gttccgctgg 5281 atgcgcttcc atgacctcgg attgtggaca ggagatcgca atctcctgcc cgaattcgta 5341 aatgatgatg gcgtctaagg acgctacacc aagcgcagat ggcgccactg gcgccggcca 5401 gctggtaccg gaggttaata cagctgaccc tatacccatt gaccctgtgg ctggctcctc 5461 tacagcactt gccactgcag gccaagttaa tttgattgat ccctggataa tcaataattt 5521 tgtgcaagcc ccccagggtg aattcacaat atccccaaac aatacccccg gtgatgtgct 5581 ttttgatttg cagttaggac ctcatttaaa ccctttcctc tcccatctct ctcagatgta 5641 taatggctgg gtgggcaaca tgcgagtgcg tgttgtcttg gctggtaatg ctttcacggc 5701 tgggaaggtt ataatttgtt gtgttccccc tggttttcaa tctcgtactc tttccatagc 5761 tcaggctact ttattccccc acgtcattgc tgatgttagg acccttgacc ctgtagaagt 5821 gcctcttgaa gatgtcagga acgtgttgta tcataataat gacacccaac ctaccatgcg 5881 cctcctttgc atgttgtaca ctcctctccg caccggggga gcgtctggtg ggactgattc 5941 cttcgtggta gctgggcgtg tacttacttg cccaggccct gactttaact tcttattctt 6001 ggtccctcct acagtcgagc aaaagactcg ccctttcact gtacccaata tccctttgaa 6061 gtatctgtct aactccagaa tcccaaaccc cattgaaggt atgtcattgt cacctgacca 6121 gactcaaaat gtccaatttc aaaatggcag gtgcacaatc gatggtcaac ccctcgggac 6181 tacacctgtc tcggttagcc agttatgtaa gtttaggggt aggattacat ctggacagaa 6241 ggtgctcaat ttgacagagt tggatggttc accttttatg gcctttgctg cccctgcccc 6301 tgcgggcttc ccagatcttg ggtcctgtga ttggcatatt gagatgagta aaatcccaaa 6361 ttctagcacc cagagtaatc caatagtggt caattctgtc aagcccaata gtcaacagtt 6421 tgtccctcac ttgtcaagca tcacccttga tgacaatgtt tctagtgggg gtgattatat 6481 cggtactata caatggacct ctcctccttc tgattctggc ggagccaata caaacttttg 6541 gaaaatccct gactatgggt ctagcttggc tgaagcttca cagctggccc ccgctgtcta 6601 tccacctggt ttcaatgaag tgattgtgta ttttatggca tctatacctg gccccaatca 6661 atctgggtcc cctaacttgg tgccatgcct actcccccag gaatatataa cacatttcat 6721 tagtgagcac gcccccattc agggtgaggc tgccttactc cattatgtgg acccagacac 6781 caatcgtaat ttgggtgagt ttaaattgta tcctggtggt tatttaacct gtgttcctaa 6841 tagttctagt actggacctc aacagcttcc tcttgatggt gtttttgtct ttgcttcttg 6901 ggtctctaga ttttatcaat taaagcctgt gggaacagcc ggaccggcta gaggtaggct 6961 tggtgtccgt agataatggc ccaagccatt ataggagcca ttgccgcctc cgcagccggt 7021 agcgcccttg gtgctggcat ccaggctggt gctgaagctg cgttgcaggc acagagatat 7081 caacaagatc tgactttgca gcaaaattct tttaatcatg ataaggaaat gttaggttat 7141 caaatggaaa tgtccaacaa gttgctagct aaaaatctta acacccgcta ttctcttctc 7201 caggcgggtg gcctctcatc ctctgatgcg gctagggctg tagccggggc ccccgtcact 7261 aggttggtcg actggggggg agtgcgtgtt gcggcacccc aatcatctgc caccacattg 7321 agatctggta attttatggc tgtgccactc ccagctcagc caaaacagaa gccccttgcc 7381 agtgaaggtt attctaaccc tgcttatgac cctgtgcaac gcacagcctc ttgggttcaa 7441 tctcagaact ccagccggtc ttggtctcca taccataggc aagcccttca gactgtgtgg 7501 gtgacccccc ctggttctac ctcttcttct tctgtttcta ctgcccctcg agggtatttc 7561 aatacagata gattgcctct attcgcaaac ttgaggcgtt aa //