Typing tool
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Typing tool
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Complete norovirus genomes
| MF918359 | GII.17 | |
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| GII.P17 |
ORF1: 10..5112
ORF2: 5093..6715
ORF3: 6715..7494
LOCUS MF918359 7565 bp RNA linear VRL 11-OCT-2017
DEFINITION Norovirus GII.17 strain GII.17/GX213/CHN/2015, complete genome.
ACCESSION MF918359
VERSION MF918359.2
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7565)
AUTHORS Xin,Y., Ao,Y., Li,L., Yu,J., Li,J., Lin,L. and Zhang,B.
TITLE The discovery and gene sequence analysis of GII.17 norovirus in
Rhesus Monkeys of Guangxi
JOURNAL Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi (2017) In press
REFERENCE 2 (bases 1 to 7565)
AUTHORS Xin,Y., Ao,Y., Li,L., Yu,J., Li,J., Lin,L. and Zhang,B.
TITLE Direct Submission
JOURNAL Submitted (06-SEP-2017) The First Affiliated Hospital of Hunan
Normal University, Pediatrics, Hunan People's Hospital, Jiefangxi
Street, Furong district, Changsha, Hunan 410005, China
REFERENCE 3 (bases 1 to 7565)
AUTHORS Xin,Y., Ao,Y., Li,L., Yu,J., Li,J., Lin,L. and Zhang,B.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2017) The First Affiliated Hospital of Hunan
Normal University, Pediatrics, Hunan People's Hospital, Jiefangxi
Street, Furong district, Changsha, Hunan 410005, China
REMARK Nucleotide and amino acid sequences updated by submitter
COMMENT On Oct 11, 2017 this sequence version replaced MF918359.1.
##Assembly-Data-START##
Assembly Method :: SeqMan v. 7
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7565
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/strain="GII.17/GX213/CHN/2015"
/isolate="GX213"
/host="Rhesus monkey"
/db_xref="taxon:552592"
/country="China"
/collection_date="2015"
/note="genotype: GII.17"
CDS 10..5112
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATE49950.2"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAADAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGTVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACRDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYIRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERKDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGVLHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPEGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSVLIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5093..6715
/codon_start=1
/product="capsid protein VP1"
/protein_id="ATE49951.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVSIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6715..7494
/codon_start=1
/product="capsid protein VP2"
/protein_id="ATE49952.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSPSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISQVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tctttgaaga tggcgtctaa cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac
61 gacaaggaaa aatcttcaag tgacagcttg tttgctaaca tgtctgtcac ttttaagaaa
121 gccctcgggg cgcggtctaa acaaccgccc ccgggagaaa caaaacaaat acaaaaacca
181 ccaaggccac cgacaccgga attggtgaag agaatacctc cacccccacc caatggcgag
241 gatgaaccag ggatagtgta caaggtggga gagggtgtgt ctgggctgcc cgacctaaca
301 actgtggtac aacctgacgc acaaaacaca gcttatagtg ttcccccact tagccagaga
361 gaagtcggcg aagctaaaga accgctgcct ggctccattc tggaaatgtg ggatggtgag
421 atctaccact atgggctgta tgttgagcgg gggcatgtgc tcggagtaca caaaccacct
481 gctgcaataa gccttgccaa aattgaaata acaccgctgt ctctctactg gagagtggtc
541 tacactcccc agtatttgat agatccagga actcttaaga acttgagtgg agagactttc
601 ccatacacgg cctttgacaa caactgttat gccttctgtt gttgggtcct agacctcaac
661 gactcctggc ttagcaggag aatgatccaa agaacaactg gattcttcaa accttatcag
721 gattggaaca gaaaaccctt accaaccatg gatgaaccga aaatcaagaa ggccgcggat
781 gctgtcctat gcgctctctc ctcactcttc actagaccca ttaaggacat cattggaaag
841 cttagaccac tgaacattct taatatactg gcaacctgcg attggacttt tgcaggcaca
901 gtggagtcct tgatccttct tgctgaactc tttggggtgt tctggacacc cccagatgtg
961 tctgcgatga ttgctccctt actcggtgac tacgagatgc aaggccccga agacctggcc
1021 gtggaacttg tgcccgtggt gatgggagga ataggtttgg tgttaggatt caccaaagaa
1081 aagatcggca agatgctttc atcggctgcg accacactta gggcctgcag ggatctagga
1141 tcttatggat tggagatact caaactggtc atgaagtggt tcttccccaa gaaggaggag
1201 gctaacgaac tagccatggt gagggccatt gaggatgcag tcctggattt ggaggcaata
1261 gaaaacaatc acatgaccac ccttctcaag gataaagaca gcctagccac atacattagg
1321 actcttgact tggaagaaga gaaagcaagg aaactgtcaa ccaaatcggc gtcacctgac
1381 atcgtgggta caataaacgc attattggct aggatagcag ccgccaggtc actggtccac
1441 aaggctaagg aggagctctc gagcagacag agacctgttg ttgtaatgat atcaggtaga
1501 ccaggtatag gaaagaccca tctggccaga gagctagcca agaaagttgc gtcaacactg
1561 tcaggcgacc aaaggattgg actggtacct agaaatggcg tcgaccattg ggacgcctac
1621 aagggagaaa gggtggttct gtgggatgat tatggtatga gcaaccctat acaggacgca
1681 ctgaggctcc aagaattggc tgacacctgt cctctgaccc taaattgtga taggattgaa
1741 aacaaaggaa aagtgttcga cagtgatgcc ataattataa caaccaacct tgcaaaccca
1801 gcaccactag actatgtcaa ctttgaggcc tgctctagac gcatagactt cttggtgtat
1861 gcagacgcac ctgacattga gaaggctaag cgtgacttcc ctggccaacc agatatgtgg
1921 aaagaccatt tcaagccaga cttctcacac attaaacttc agctggcacc acagggaggt
1981 tttgacaaaa atggcaacac cccacatggc aaaggtgtgg tgaagtccct gacgattggt
2041 tctctgatcg ccagggcctc cggcttgctc cacgagagaa aggatgaatt cgagctccaa
2101 ggctctgacc tgccaacctt caattttgac cgcaacaaag tcgccgcctt cagacaatta
2161 gcagctgaaa acaaatatgg tcttatggac acactgaggg tcggcaacca actgaaaagt
2221 gttaagaccc tggatgagct gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag
2281 atagtgtata atggatgcac ctataccatg gaatctgatg ggaggggcaa ggttgtggtt
2341 gaaaaggtac aaaacgcaac agttcaaacc aacaatgaac ttgtaggggt gctccaccac
2401 ctgagatctg caaggataag atactatgtt aaatgtttcc aagaagccat ttactctcta
2461 ctccaaattg ctggtgcagc cttcgtcacc tcacgcatcg tgaggcgcat gaacatatca
2521 aacctctggt cgaagccacc catcgaggag ggtgatgagc ctgaagacag aggaggatgc
2581 cccaagccca gggatgaaga tgacctcact attgactcta gagacattaa agtggaaggg
2641 aagaagggca agaacaagtc tggccggggc aagaaacaca cagccttctc ttccaagggc
2701 ctcagtgatg aagagtacga tgagtacaag agaatcagag aggagaggaa tggcaaatac
2761 tcaatagagg agtacctcca agatagggac agatactatg aagagcttgc cattgctaag
2821 gccactgagg aggacttctg tgaggaggag gagattaaaa tccgccagag aatcttccga
2881 cccaccagga agcagcggaa agaggaaagg gccacgcttg ggcttgtcac aggatcggaa
2941 atcagaaaga ggaatccaga tgactttaaa ccaaagggaa aattgtgggc tgatgacaac
3001 aggagcgtgg attacaatga gaggatagat tttgaggctc ccccgagtgt ttggtctagg
3061 atagtcaact ttggcacagg ctggggattc tgggtttctc caagtctctt tataacttca
3121 acacacgtca taccagaagg aatcactgag gcctttggag tgcccataaa ccaaatccaa
3181 attcacaaat ctggagaatt ttgccgcttg cggtttccaa agccaattag accagacgtg
3241 agtgggatga tcttggaaga gggcgcccct gaaggcactg ttgtgtctgt tctcatcaaa
3301 aggacaacag gggagctgat gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa
3361 atccaaggta gaacggtggg tggtcagatg ggtatgcttc tcactggctc aaatgctaaa
3421 agcatggatc taggcacaac gccaggtgac tgcgggtgtc catacatata caaaaggggc
3481 aatgaccttg tggtcattgg ggtgcacact gcagcagctc gtggaggcaa cacggtcata
3541 tgtgccacac agggaagtga aggtgaagcc actcttgaag gaggtgacaa caagggtacc
3601 tattgtggag cccccatttt gggacctggc aatgcaccaa aattgagcac aaagacaaaa
3661 ttctggagat cctctaacgc accgcttccc ccaggtactt atgaaccagc ataccttggt
3721 gggagagacc cgcgcgtgaa gggaggccca tctctgcaac aagttatgag agaccaactt
3781 aaacctttta cagagcccag agggaagcca ccaaacccaa atgtcttaga gtcagcaaag
3841 aagactatca tcaatgttct ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc
3901 caagcttgtg catccctcga caagacaacc tccagtggat acccgcacca cgtccggaag
3961 aatgactatt ggagtggtga atccttcaca ggaaaacttg cagatcaggc ttcaaaagca
4021 aatctcatgt atgaggaagg caagcacatg caaccagttt acaccgcagc actcaaagac
4081 gagctcgtga aaactgacaa aatttatggc aaaatcaaga aaagactcct gtggggttct
4141 gacctctcca caatgattcg atgcgccaga gcatttggtg gtctcatgga tgaattcaaa
4201 gcaaattgta ttacactccc tatcagagtt ggtatgaata tgaatgaaga tggtcccata
4261 atatttgaga gacactccag gtacaggtac cactatgatg ctgattactc ccgctgggac
4321 tccacacaac agcgggcagt gctggaagcg gcacttgaaa tcatggtgag attttctgct
4381 gagccacagc tggcacaaat agtggcagag gacctgctgt caccaagtgt ggttgatgtg
4441 ggtgatttca aaatcgctat caatgaaggc ctaccatctg gcgtgccttg cacctcacaa
4501 tggaattcta ttgcccactg gttacttacc ttgtgtgccc tttctgaagt gacaggatta
4561 ggtcctgaca tcatacaagc taactccatg tactctttct atggtgatga tgagattgtg
4621 agcacagaca taaaattgga cccagagaaa ttgaccgcaa agctcaaaga atatggcctt
4681 aaacccactc ggcccgacaa aactgagggg ccgttggtga ttagtgagga cctgaatggg
4741 ttgactttcc tccgccgaac agtcacccgt gatccagcag gttggtttgg aaagttggac
4801 caaaactcca tcctcaggca gttgtactgg acaagaggac ccaaccatga agaccccagt
4861 gagaccatga taccacacgc acaaagacct gtgcagctca tggcactact aggagaatcc
4921 tccctacatg gaccctcatt ttacagcaag gttagcaaat tagtcatatc tgaacttaaa
4981 gagggaggaa tggattttta tgtgcccaga caagagtcaa tgttcagatg gatgaggttc
5041 tcagatctaa gcacatggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat
5101 ggcgtcgaat gacgccgctc catctaatga tggtgctgct ggtctcgtac cagagggcaa
5161 caacgagacc cttcccctag aaccagttgc gggcgcagct atagccgcac ccgtcactgg
5221 ccaaaataac ataattgacc cctggattag aacaaacttt gtgcaagcac caaatggaga
5281 gttcacagtg tcacccagaa actctcctgg agaaatttta ttaaacttag agttgggccc
5341 tgatttgaac ccttatttgg ctcatttgtc aaggatgtat aatgggtatg ctggtggagt
5401 ggaagttcag gttctcctgg cagggaacgc gttcactgcc gggaagatcc tcttcgccgc
5461 cgtcccgcca aatttcccag tggaattctt aagcccagcc cagattacaa tgctcccaca
5521 tttaatagta gatgttagga ctcttgaacc aattatgatc ccactccctg atgttaggaa
5581 tacattcttc cattatagta accagcctaa cagccgcatg agattagtgg ctatgctcta
5641 taccccactc agatctaatg gctcaggtga tgatgtcttt actgtctctt gcagggtttt
5701 gactaggcct actcctgatt ttgagttcac ttatttagtg ccaccttctg ttgaatctaa
5761 aaccaagcct ttttccttgc ctattttaac cctttctgag ctcacaaatt cgaggttccc
5821 agtctccatc gattcgcttt tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa
5881 tggcaggtgc acacttgatg gtgagttaca aggcacaact cagttgctcc catctggcat
5941 ctgtgcattc agaggacggg tgacagcaca aattaaccaa cgtgacaggt ggcacatgca
6001 actgcaaaac ctcaatggta caacatatga cccaactgat gatgtgccag ccccgctggg
6061 tacacctgac ttcaagggcg tcgtgtttgg gatggtaagc caaagaaatg tgggtaatga
6121 tgcgcctggc tcaaccagag cccaacaggc gtgggtttca acctatagcc cccaatttgt
6181 ccccaaatta ggttctgtca atcttagaat tagtgataat gatgatttcc aattccagcc
6241 gacaaaattc acaccagtgg gcgtcaatga tgacgatgat ggccacccgt tcagacaatg
6301 ggaactacca aactattcag gggagcttac cttgaatatg aatcttgccc ccccagttgc
6361 tccaaatttt cctggtgaac aattgttatt cttcagatct ttcgtgccat gctcaggagg
6421 ttacaaccaa ggtattatag attgtcttat tccccaagaa tggatccaac acttctatca
6481 ggaatcagca ccctcccagt cagacgtggc cctaatcagg tatgtcaacc ccgatacggg
6541 acgtacactg tttgaagcaa aattgcacag atctggttac attactgtgg ctcactctgg
6601 agactatcct cttgttgttc cggctaatgg acactttaga tttgattctt gggtaaatca
6661 gttttactca ctcgccccaa tgggaactgg gaatgggcga aggagggctc agtaatggct
6721 ggggctttca ttgcaggatt ggcaggcgac atgctcacgt catctgtggg ctcccttgtg
6781 aacgcagggg caaacgccat caaccaaaag atagactttg aaaacaacaa acaactccag
6841 tctgcttcct ttcagcatga taaagagatg ctccaagcgc aggtgagggc aaccaagcag
6901 ctgcaatctg aaatgatagc cctaaaacag ggggttttgg ccgcaggcgg cttttccccc
6961 actgatgcag caaggggatc cattggtgca cccatgacaa aggtgcttga ctggtctggc
7021 actcgatact gggcgcccaa ttccacaaag acaactggct attcgggaca attcacctct
7081 tcacctgtgc atatgtctag cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct
7141 ctagctcctt cctctccttc tagcagtgtc tatagtatgt atactcaatc tactcattta
7201 acatctggct cttctagtaa tgcttcttct gcctccacaa aattgacaaa cttaagctct
7261 ggctcctccc aaaacagaac agcagagtgg gtaaatcaac agagaagtct tagccctttc
7321 atgagtggcg cacttaacat ctcacaagtc acgccaccct caagtagggc ttccagttct
7381 gggacggtct cgaccgtgcc caaggaagtt ttggactcct ggacgtctgc gtttaacaca
7441 cacagacagc cgctcttcgc acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa
7501 gaaataattg gctataatgt gatttctttc taaatttggc taatttgtat cttttaaaaa
7561 aaaaa
//