Typing tool
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Typing tool
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Complete norovirus genomes
| MF802554 | GII.5 | |
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| GII.P40 |
ORF1: 5..5140
ORF2: 5121..6743
ORF3: 6743..7238
LOCUS MF802554 7238 bp RNA linear VRL 07-AUG-2018
DEFINITION Norovirus GII isolate NoV/12197/16/NJ ORF1 and ORF2 genes, complete
cds; and ORF3 gene, partial cds.
ACCESSION MF802554
VERSION MF802554.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7238)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Multiple noroviruses including three recombinant ones:
GII.P16-GII.2, GII.P7-GII.6, and GII.P22-GII.5, caused outbreaks in
Nanjing, China, 2016/17 winter season
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7238)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Direct Submission
JOURNAL Submitted (05-SEP-2017) Department of Microbiology, Nanjing
Municipal Center for Disease Control and Prevention, Zizhulin No.
2, Nanjing, Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7238
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV/12197/16/NJ"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Nanjing"
/collection_date="Dec-2016"
CDS 5..5140
/codon_start=1
/product="ORF1"
/protein_id="AXJ20711.1"
/translation="MKMASNDAATATAGNTSTNSVIHNQDVNSTSSLFANMTVGLKRA
LGARPKQPAPRIPSPNREGRHETTPRAPPPNKGGNANIPPIPPPPPNGEDIVIKYTKQ
DDAVEGVPTVATVDVPPTHNTAYSVPPLDQREKIEAKEPLTGSILEMWDGEIYHYGLY
VEKGLVLGVHKPPAAISFARIELTPLSLYWRTVYTPPYLIAPETLRKLHGESFPYTAF
DNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLL
CGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGIVEAFILLAELFGVFWTPPDIS
TFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREI
GNYGIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLAT
FLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVI
MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM
SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC
SRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPH
GKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHNRVAAFRRLAADNKYG
LMETIKVGNKLKSVKTLEQLKDALKDISIMPCRIVYNSMAYDLDSNGSGRVSVKKVVD
HKVQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRITRRLNVSSIW
VRPEKQVEATEEPPSPPTEDWTITPANAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEY
DEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRVFRPTRK
QRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIV
NFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQVHRSGEFCKMRFPKAIRPDV
SGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSN
AKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGRD
NHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQ
VMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYAQACASLDKTTSS
GHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYE
KIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKY
KYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKIT
INEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEIVSTDI
KLDPMKLTNKLREYGLIPTRPDKTEGPLIIKENLDGLTFLRRDVCRDPAGWYGKLDQS
SIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPVFYKKVSKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5121..6743
/codon_start=1
/product="ORF2"
/protein_id="AXJ20712.1"
/translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
QLQACNICSIRGKVTGQVPNEQHMWNLEVTNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 6743..>7238
/codon_start=1
/product="ORF3"
/protein_id="AXJ20713.1"
/translation="MAGAFIAGLAGDVLSNGLGSLIGAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVST"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctgc cactgcgacc gctggcaata ccagcacaaa
61 cagtgtgatt cacaaccaag atgtaaattc tacatctagc ctctttgcca acatgactgt
121 tggcctgaag agggccctgg gggcgagacc aaaacagccc gctcccagga ttccttcccc
181 caacagggag ggaagacatg aaaccacccc tagagctccc cctccgaaca agggaggtaa
241 tgctaacatc ccaccaatac cacccccacc gcccaacggg gaggacatag tcatcaagta
301 taccaagcaa gatgacgcgg ttgaaggggt gcccaccgtc gccacggttg acgttccccc
361 cacacacaac accgcttaca gtgtcccccc cctggatcag agggaaaaga ttgaagcgaa
421 ggaacccttg acagggtcga tacttgagat gtgggacggt gagatctacc actatggtct
481 ctacgtggag aaaggcttgg ttcttggtgt gcacaaacct ccagctgcca taagctttgc
541 acgcatagaa cttactcccc tctccctata ctggagaaca gtctacactc caccttacct
601 gatagcccca gaaaccctaa ggaaactcca tggggagtca tttccatata cagcctttga
661 caacaattgt tactccttct gctgctgggt cctggacctg aacgattctt ggctcaacag
721 aaaatttgtg tcaaggacaa cgggtttcta caggccctac caagagtgga atagaaagcc
781 tttgccaacc atggatgaag gaaagctcaa gaaagtggcc aatgtgcttc tatgtggtct
841 ctctgggctt ttcactaggc ccatcaagga cctcataggg aagttgaggc cactaaacat
901 actaaacatc atcaccaatt gcgactggac cttccccgga attgtggaag ctttcatact
961 gcttgcagag ctctttggag ttttctggac accaccagac atttccacct tcatagcttc
1021 acttctgggt gactatgaaa tgcagggccc cgaggatatc gcggttgaag tcgtaccggt
1081 gatcctcggc ggcataggta tggtacttgg attcaccaaa gaaagaattg gccggttgct
1141 gagctctgcc gcttcctcac ttagagcatg cagggagatc ggcaactatg ggatagaggt
1201 agtgaagctg gtgatgaaat ggtttttccc caccaaagat gagacaaatg agatggatat
1261 ggtgagggca atagaggatg ctgttcttga ctttgaagcc atacagaaca atcacatgac
1321 agcattgctt aaagacaaaa acagccttgc aaccttcctc agggagctag atatggaaga
1381 ggaaaaggcg cggaagctat caacaaaatc tgcgtcccca gatattatcg gcaccataaa
1441 cgccctccta gccagaattg ccgctgctag gtccctagtc cacaaggcca aggaagaaat
1501 gtcatctagg atgcgtcctg ttgtcatcat gatctccggc cgacccggga tagggaagac
1561 gcatctggcc cgcgacctgg ctaagaagat ggcggcgacc ctctcaggtg atcagagagt
1621 ggggctcgtg ccgaggaatg gtgttgacca ttgggacgca tataaaggag agaggatcgt
1681 gctctgggac gattatggaa tgagcaaccc tgtgactgat gcgctgcggc tccaggagct
1741 tgccgacaca tgccccctaa cgctcaactg tgatagaata gaaaataagg gaaaagtgtt
1801 tgacagtgac actataatca tcaccactaa tttggccaat cctgctcctc tagattatgt
1861 caactttgaa gcttgctccc gccgaatcga cttccttgtc tatgcagact ccccctcggt
1921 ggacaaggcg aagagagact tccctggtca accagacatg tggaaggatg cttttaaatc
1981 ggacttttca cacataaaac ttcagttggc accacaggga ggctttgata agaacgggaa
2041 cacccctcat gggaaaggtg tcatgaaaac gctaaccaca cactcactca ttgcccgcgc
2101 cacgggcctc ctacatgaga gattggatga atttgacctg cagggacccg agttgcccgt
2161 gtacaatttt gaccacaaca gggtggctgc tttcaggaga ctggcagctg acaacaagta
2221 tgggcttatg gaaaccataa aggtgggtaa caaattgaaa agcgtcaaga ctctagaaca
2281 actcaaggac gctctaaaag acataagtat catgccttgc agaatagtct acaactcgat
2341 ggcttacgat ctcgattcga acggatcagg gagagtcagt gtcaaaaagg ttgtagacca
2401 caaggtccag accaacaacg agctcaattc cgccctcaac aatctgcgcg gtgccagggt
2461 gagatactat gttaaatgtg ttcaagagat ggtatattcc ctccttcaaa ttgctggcgc
2521 agccttcgtc acttcaagaa taacacggag gttgaacgtc agcagcattt gggtcagacc
2581 agaaaaacag gtggaggcca ctgaggaacc cccatccccc ccaactgagg actggactat
2641 aaccccagca aatgcagtcc aggaaggtaa aaagggcaag aacaagagcg gcagaggcaa
2701 gaaacatacc gccttctcca gtaaaggcct aagtgatgag gagtatgatg agtataaaag
2761 aatcagagaa gagagacaag gaaaatactc catagaagaa taccttcagg atagggaccg
2821 gtattatgaa gaattggcca tagccaaggc aacagaggag aacttctgtg aggaggaaga
2881 aataaaaatc agacagaggg tcttccgtcc gaccaggaaa caacgcaagg aagagagggc
2941 aactctagga ctggttacag gtagtgaaat aaggaagagg aacccagatg atttcaagcc
3001 aaggggaaaa ttgtgggctg atgatgaccg cagtgtaaat tacaatgaga aaatagattt
3061 tgaagcgcct cccagccttt ggtctcgaat agtcaacttc ggatcaggtt ggggtttttg
3121 ggtttcttcc aacttgctca tcacatcaac acatgtcatc cccccgaaca tgactgaggc
3181 cttcggtgta ccaataagcc agatacaagt acataggagt ggagagttct gtaaaatgag
3241 gttccccaaa gctataagac ctgatgtctc aggcatgatc cttgaggaag gagctcccga
3301 gggaacggtg gtgaccatac tgatcaagag gaccaccggt gagctcatgc cactggccgc
3361 ccgaatgggc acccacgcca ccatgaaaat tcaagggaaa atgcttggag gccaaatggg
3421 catgctcctc acggggtcca acgccaagaa catggacctc ggtaccatcc ctggagactg
3481 tggttgtccc tatgtttaca agagaggtaa cgattgggtg gtcatagggg tgcacaccgc
3541 agccgccaga ggtggcaaca ctgtgatttg tgccactcag ggtccagacg gtgaggccac
3601 gcttgagggg agagacaacc acgggactta ctgtggggca ccaatacttg gaccaggaag
3661 tgcaccaaaa ctcagcacca agactaaatt ctggaggtca tccaacgccc cactcccgcc
3721 tggtacttat gagcccgctt acctaggcgg aaaagaccca agagtcaagg ggggaccatc
3781 gctacagcaa gttatgaggg aacaactcaa acctttcaca gccccccgag ggaagccccc
3841 acgaccggcg atcctggagg ctgctaagga aaccatctgt aatgtacttg agcagatcat
3901 tgacccaccc caaaaatggt cttatgctca ggcctgtgcc tctctagaca aaacaacatc
3961 cagtggccat ccccaccata tgaaaaagaa tgataactgg aacggagagt cctttaccgg
4021 tgtgttggct gatcaagctt ccaaggcaaa tctcatgttt gaacaaggga aacacatgca
4081 acctgtgtat actgccgccc tcaaagacga actcgtcaag actagcaaga tctatgagaa
4141 aattaagaag aggctcctat ggggttcaga tctgggcaca atgatccgct gtgctagagc
4201 ttttggaggc ctcatggatg agatgaaagc aaattgtgtg aacttaccaa tcagagttgg
4261 catgaacatg aatgaagatg gacccatcat tttcgagaaa cattcaaagt ataagtacca
4321 ttatgatgct gactactcta ggtgggattc aacccaacag agacatatct tgggggctgc
4381 ccttgagata atggttaggt tctcagctga acctgaattg gcccaaattg tatctgaaga
4441 tctcctagcc cccagcgtgg tggatgttgg tgacttcaag atcaccataa acgagggttt
4501 accctctgga gtgccgtgca catcacaatg gaactcaatt tcccactggc taataacact
4561 atgtgccata tcagaaattt cagggctgtc gccagatgtg gtacaaacaa actcctgttt
4621 ttccttctat ggggatgatg agatagtcag cactgacatt aagttagatc ccatgaaatt
4681 aactaacaag ttgagggagt atggactgat cccaacaaga ccagacaaga cagaggggcc
4741 actcataatc aaagagaacc ttgatggctt gacctttctg aggagggatg tgtgtcggga
4801 cccagctggt tggtatggaa agcttgatca atcctcaatt atgagacaat tgttttggac
4861 caaggggccc aaccatgacg atcccaatga gacaatgatt ccacactccc agaggcccat
4921 acaactaatg tcattgctgg gggaggcagc attacacgga ccagttttct acaagaaagt
4981 cagtaaatta gttatcactg agctcaaaga gggtggaatg gatttttacg tgccaaggca
5041 agaacctatg tttaggtgga tgagattctc tgacctcagc acttgggagg gcgatcgcaa
5101 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgctactcca tcaaatgatg
5161 gtgctgccgg cctcgtgcca gaaagtaaca atgaggcaat ggctctggaa cccgtggtgg
5221 gggcgtcttt agccgcccct gtcactggcc aaactaatat aatagacccc tggattagaa
5281 ctaattttgt ccaagcccct aatggtgaat ttacagtttc ccctagaaat tcccctggag
5341 agatattggt caatttggag ttaggtccag aactgaaccc ttatctggca catttagcta
5401 ggatgtacaa tggttatgcg ggtggtatgg aggtgcaagt gatgctcgcg gggaacgcgt
5461 tcactgctgg caagatcatc tttgccgccg tgccacctta ctttccagtg gaaaatctta
5521 gcccttccca aataacaatg ttcccacatg tgattatcga tgttagaacc ttagaacctg
5581 tattgctccc aatgcctgat gtcagaagca cccttttcca ctttaatcaa aaggatgaac
5641 ctaagatgag acttgttgcc atgctctaca cccctcttcg ttctaatggc tctggtgacg
5701 atgttttcac tgtctcatgt aggattctta ctaggccctc tcctgaattt gatttcacat
5761 acttggtgcc accaacagtg gaatcaaaga ccaagccatt cacactacct gtgctgacat
5821 tgggagaatt gtccaattct agattccctc tctccattga tgaaatggtc accagcccta
5881 atgagtccat agttgttcag ccacagaatg gtagggtcac actagatggg gagttgttgg
5941 gcacaaccca actgcaagca tgtaacattt gttccatacg ggggaaagtg acaggacagg
6001 tccctaatga acaacacatg tggaacctgg aggttacaaa cctaaatggg acgcaatttg
6061 accctacaga tgatgtccca gcccctcttg gtgtgcccga ctttgcaggt gaggtctttg
6121 gtgtactcag tcagagaaat agaggtgaaa gcaatccagc aaacagggct catgatgctg
6181 ttgtggctac ctacagtgat aaatacaccc ctaaattggg cttagtgcaa attgggactt
6241 ggaacaccaa cgatgttgaa aaccagccaa caaaattcac cccaattggt ttgaatgagg
6301 tcgccaatgg ccatcgattt gaacagtgga ccttgcctag gtattctggt gccctgacac
6361 taaatatgaa tttagctcct gctgtggccc cgctctttcc tggagagcgt ctccttttct
6421 tccgctctta cgtcccatta aaaggtggat ttggaaaccc tgctatagat tgtctagtgc
6481 ctcaggagtg ggtccaacat ttctatcagg aatctgcccc atctctgggg gatgtggcct
6541 tagtcaggta cgtcaaccca gacaccgggc gcgtcctttt tgaggccaaa ctccacaaag
6601 gtgggttcct gaccgtctca agcactagca cagggcctgt tgtggtccca gccaatggtt
6661 atttcagatt tgattcttgg gttaatcaat tttactctct tgcccccatg ggaactggga
6721 atgggcgcag aaggtttcag taatggcagg agctttcata gcaggtttag caggtgatgt
6781 gcttagtaat ggcctcggtt cgctgattgg tgccggagcc aatgctatca atcaaagagc
6841 agaatttgat tttaataggc aattgcagca aaattctttt aatcatgata aggagatgtt
6901 aaatgcccaa attcaagcaa caaaacagtt gcaggctgat atgatagcaa tcaaacaggg
6961 agtcctagct gctgggggtt tctcaccaac tgatgcagcc agaggagctg tcaatgcacc
7021 catgacccaa gcattagatt ggagtggcac taggtattgg gcccctggtt caatgaagac
7081 caccagctat tctggaaagt ttgtgtccat gaatcctgtt aggcaggttg agttcccgca
7141 gcccaaaaag agtgcggcca taccatcaag tgccagctct gtgtcttctg gtaggactaa
7201 tttcacaaat tctactcagt caactgttgt tagcactt
//