Typing tool
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Typing tool
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Complete norovirus genomes
| MF668937 | GII.1 | |
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| GII.P33 |
ORF1: 1..5091
ORF2: 5072..6679
ORF3: 6679..7447
LOCUS MF668937 7447 bp RNA linear VRL 05-SEP-2017
DEFINITION Norovirus GII isolate Hu/IDN/ITD11-3/2015/GII.Pg/GII.1
nonstructural polyprotein gene, partial cds; VP1 gene, complete
cds; and VP2 gene, partial cds.
ACCESSION MF668937
VERSION MF668937.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7447)
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Yamani,L.N.,
Juniastuti, Soetjipto, Matsui,C., Deng,L., Abe,T., Doan,Y.H.,
Fujii,Y., Kimura,H., Katayama,K. and Shoji,I.
TITLE Occurrence of norovirus infection in an asymptomatic population in
Indonesia
JOURNAL Infect. Genet. Evol. 55 (2017) In press
PUBMED 28843544
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7447)
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Yamani,L.N.,
Juniastuti, Soetjipto, Matsui,C., Deng,L., Abe,T., Doan,Y.H.,
Fujii,Y., Kimura,H., Katayama,K. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (14-AUG-2017) Center for Infectious Diseases, Kobe
University, 7-5-1 Kusunoki-Cho, Chuo-ku, Kobe, Hyogo 6500017, Japan
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. v7.0.3
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7447
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IDN/ITD11-3/2015/GII.Pg/GII.1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
/note="genotype: GII.Pg/GII.1"
CDS <1..5091
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ASW22507.1"
/translation="NDASAAAAATSNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPP
RETTQKQKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKGGVSGLPELSTVRQPGETN
TAFSVPPLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAK
VELATLSLYWRPVYTPQYLISPGTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLRP
LNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIVKWFFPKKD
ETNELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDLAKK
VAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEKAKR
DFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVARASGL
LHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLIDTMRVGSQLKNVKTVSEL
KQALKNISIRRCQIVYGGLTYSLESDGKGNVRVDKVQNSAVQTNNELTGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKDGCPKP
KDEEEFVISSEDIKSEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLVTGS
EIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNEHWNGE
SFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATM
IRCARAFGGLMDEFKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQ
QRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDTIQANSLFSFYGDDEIVSTDIKLDPERLTVKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5072..6679
/codon_start=1
/product="VP1"
/protein_id="ASW22508.1"
/translation="MKMASNDVAPSNDGAAGLVPEVSNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTSFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6679..>7447
/codon_start=1
/product="VP2"
/protein_id="ASW22509.1"
/translation="MAGAFVAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTIDLPRKTSTTPAPTPVSRPSSSASTVSTRSTI
VSGTSGLSSSTRSSFSSQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQ"
ORIGIN
1 aacgacgctt ccgctgccgc tgctgctacc agcaacaacg acatcgcaaa gtcttcaagt
61 gacggagtac taagtagtat ggctgtcact tttaaacgag ccctcggggc ccggcctaaa
121 cagccgcccc cgagggaaac aacacaaaaa caaaaacctc cacggccgcc caccccggag
181 ttaattaaaa agattccacc ccccccgccc aacggggagg acgatatagt ggtatcctac
241 agtgccaaag gtggtgtctc cggtctgcct gaactatcca ccgtcaggca gccgggtgag
301 acaaacacag catttagtgt ccccccactc aaccagaggg aaaacaggga cgctaaagaa
361 ccgctgcctg gcaccatcct ggagatgtgg gacggagaga tttaccacta cggcttgtac
421 gtggagcggg gcttggtgct tggggtgcac aaaccaccag cggctattag tcttgcaaag
481 gttgaactag caacactgtc tctgtactgg agaccagtgt acacccctca gtacctcata
541 tccccgggaa ctctaagaaa actacatgga gagacattcc cttacacggc ctttgacaac
601 aactgttacg ccttctgttg ttgggtcttg gatctaaatg actcttggct cagcaggagg
661 atgatacaga gaacaactgg cttcttcaga ccctaccagg actggaacag gaaacccctc
721 cccactatgg acgattccaa attgaagaag gtggctaata tagtcctgtg tgctttgtca
781 tcactattca ccaggcccat taaggacata ataggaaaac taaggccctt gaacatactc
841 aacatactag cttcctgcga ctggactttc gcaggaatag tggaatccct aattctcctt
901 gcagaactct tcggagtttt ctggacaccc ccagatgtgt ctgcaatgat cgctcccttg
961 ctaggcgact acgaactaca gggacctgaa gatctcgctg tggaactcgt accagtagta
1021 atggggggga taggtttggt tctaggtttc accaaggaga agattggcaa gatgctatca
1081 tccgccgcgt ccaccctcag agcttgtaaa gaccttggag catatggatt ggaaattctg
1141 aagttgatcg tgaagtggtt cttcccgaag aaagacgaga caaatgagct tgcaattgtg
1201 agatccattg aggacgcagt gctagacctc gaagcaatcg aaaataatca catgaccacc
1261 ctgctcaaag acaaagacag cttagcaacc tacatgaaga ccctggatct tgaggaggag
1321 aaagctagga aactctccac caaatccgct tctcctgaca ttgtgggcac aatcaattca
1381 cttctggcac ggattgcagc tgcccgttcc ttggtgcatc gggcaaaaga agagctttcc
1441 agtaggccaa gacccgttgt tgtcatgata tcaggaaagc cagggatagg gaagacccac
1501 cttgccagag atttggcaaa gaaagttgcg gccaccctca caggagacca gagggtgggc
1561 ctcatcccac ggaatggtgt cgaccattgg gatgcataca aaggtgagag agtcgtcctt
1621 tgggatgact atggaatgag taaccccatt catgacgccc ttaggctaca agaacttgct
1681 gacacttgcc ccctaacatt aaactgtgat agaattgaga ataaagggaa ggtctttgac
1741 agcgatgcca taattatcac aactaacctg gctaacccgg caccattgga ctatgtcaat
1801 tttgaagcat gctcgaggcg catcgacttc ctagtgtatg ctgatgcccc cgacgttgaa
1861 aaggcaaaac gcgacttccc aggacaacct gacatgtgga aggatgcttt tagacctgac
1921 ttctcacaca taaagttgat gttggctcct cagggtggtt ttgataagaa cggcaacacc
1981 ccacatggaa aaggtgtcat gaaaaccctc acatctggct ccctcgttgc ccgtgcttca
2041 ggactcctcc acgaaagact ggacgagtac gagttacaag ggccaacacc cacaaccttc
2101 aatttcgacc aaaacaaggt gttcgccttt aggcagctcg ccgctgaaaa taaatacggg
2161 ctgatagaca ccatgagagt gggaagccag ctcaaaaatg tcaaaactgt gtcagagctc
2221 aaacaggcac tcaagaatat ttcaattaga aggtgccaga tagtctatgg tggtctcaca
2281 tactcacttg aatctgatgg caaaggtaat gtgagggttg ataaggtgca aaattcagct
2341 gtgcagacca acaatgagct aactggcgca ctacaccatc tgagatgcgc taggattagg
2401 tattatgtta agtgtgtcca agaagccttg tattccatca tccaaattgc tggagccgcg
2461 tttgtcacca cacgcattgc aaagcgcatg aacatacaaa acctctggtc cagaccacag
2521 gtggaggatg aggaagagac caccagcaaa gacgggtgcc caaaaccaaa ggatgaggag
2581 gagtttgtca tctcgtccga agacatcaag tctgaaggca agaagggaaa gaacaagtct
2641 ggccgtggca agaaacacac agccttctcg agtaagggtc ttagtgacga ggagtacgat
2701 gagtacaaga gaatcagaga agaaaggaat ggcaagtact ccatagaaga atacctccaa
2761 gacagagaca agtactatga ggaggttgct atagccaggg ctactgaaga ggacttctgt
2821 gaggaagaag aagccaagat tcggcagagg attttcagac caacaaggaa acaacgcaag
2881 gaagagaggg tttcactcgg actggttaca ggctcagaaa tcaggaaaag aaacccggat
2941 gacttcaaac ccaaaggaaa gttgtgggct gatgacgaca ggagtgtcga ttacaatgaa
3001 aagctcagct ttgaagcccc cccaagcatc tggtcgagaa tagtcaactt tggatcaggt
3061 tggggctttt gggtctcacc aagtctcttt ataacatcca cccatgtcat acctcaaggg
3121 gcacaagagt ttttcggtgt ttccatcaaa cagatccaaa ttcataaatc aggtgagttc
3181 tgccgactaa gattcccgaa gccaattagg actgatgtga caggtatgat cctggaggag
3241 ggggcccctg aaggcactgt ggccacactg ctcataaaga ggccaactgg agagctgatg
3301 ccactggcag ctagaatggg tacccatgca actatgaaga tccaaggtcg tactgtcgga
3361 ggacagatgg ggatgctcct gacagggtcc aacgccaaga gcatggactt gggtactaca
3421 ccaggtgact gtggatgccc atatatctac aaaagaggaa acgactacgt ggtcatcgga
3481 gtccacacag ctgccgcccg cggagggaac actgtcatct gtgcaactca aggaagtgag
3541 ggcgaggccg tacttgaagg tggtgacaac aaaggcacct attgtggcgc cccaatccta
3601 ggtccaggaa acgcccccaa actcagtact aaaaccaaat tctggaggtc ctcaacaaca
3661 ccactcccac ctggtacata tgaaccagct tacctcgggg gcaaagaccc cagggtaaaa
3721 ggtggcccct cattacagca agttatgaga gaccaactga aacccttcac agaacccaga
3781 ggtaagccac caaagcccag tgtgttggaa gcagccaaaa agacgatcat taatgtcctt
3841 gagcaaacaa tagacccacc ccaaaaatgg acgttcgcac aggcgtgcgc atcccttgat
3901 aaaacaacct ctagtggtta cccgcaccac gtgcggaaga atgaacactg gaatggggag
3961 tctttcacag ggaaattggc tgatcaggct tcaaaagcca acttgatgtt tgaggaagga
4021 aaacacatga caccagtcta cacaggagct ctcaaagatg agttagtcaa aactgacaaa
4081 atatatggta agatcaagaa aaggttatta tggggttcag atctggcaac tatgatccgt
4141 tgcgcgcgag cgttcggagg gttgatggat gaattcaagg cccactgtgt cacactcccc
4201 atcagggtgg ggatgaacat gaatgaggat ggtcccatca tttttgaaaa acactctagg
4261 tacacctacc attatgatgc agattactct cggtgggact caacacaaca gagagctgtc
4321 ttagctgcag ccctggaaat catggtaaaa ttttccccag aaccacacct agctcagatt
4381 gtcgcagaag atctcctatc tcccagcgtg atggacgtgg gcgattttaa gatatcaatc
4441 actgaaggac tcccctctgg ggtgccttgc acttcacaat ggaattccat tgctcattgg
4501 ctcctcacgc tctgtgcact ctctgaggta acagatttat ctcctgacac catccaagca
4561 aactcactct tctcttttta tggtgatgat gaaattgtga gcacagacat taaattagat
4621 ccagaaaggt taacagtcaa actaaaagag tatggtctca agccaacccg ccctgacaag
4681 actgaagggc ctctggtcat ttctgaggac ttagatggtc tgaccttctt gcggagaact
4741 gtgacccgtg acccagcagg ttggtttgga aaattggaac aaagctcaat acttagacag
4801 atgtattgga ccaggggtcc caatcatgag gatccctctg aaacaatgat accacactcc
4861 caacgaccca tacagttgat gtccctacta ggtgaagctg cgctgcatgg cccatcgttc
4921 tacagcaaaa tcagcaaatt ggtcatatca gagttgaaag aaggtggcat ggacttttac
4981 gtgccaaggc aagaaccaat gttccgatgg atgaggttct cagacttgag cacgtgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgtcgctcc
5101 atctaatgat ggtgcagccg gtctcgtacc agaggtcagc aacgagacga tggcacttga
5161 gccggtggct ggggcctcca tagctgcccc tttaaccggc caaaataatg tgatagaccc
5221 ctggattaga atgaattttg tccaagctcc aaatggtgaa tttacagtgt ccccccgtaa
5281 ttccccaggt gaagtgttgt taaatttgga attaggccct gaattaaatc cattcttggc
5341 acaccttgca agaatgtaca atggttatgc tggtggggtt gaagtgcagg tgctacttgc
5401 tgggaatgcg ttcacagcag gaaaactagt gtttgcagca atccccccac acttccctct
5461 tgagaatctg agtcctggtc aaattactat gtttcctcat gtaattattg atgttagaac
5521 tttagaacct gttcttttgc ctttaccaga tgttagaaat aacttctttc attataatca
5581 gcaacctgag ccccgtatga gacttgtggc tatgttgtac acccctctta gatctaatgg
5641 ttctggtgat gatgtgttca cagtctcttg tagggtcctc actcgcccct ctccagattt
5701 tgattttaat tatttggtcc ccccaactgt ggaatctaaa actaaaccat tcaccctgcc
5761 aatattgacc atcggagaat tgtcaaattc taggttccca gtaccaatag atgaattgta
5821 caccagcccc aatgaaggag tggttgtgca acctcaaaat ggcaggtcaa cacttgatgg
5881 tgaactgctt ggcaccacac aacttgtacc atcaaacatc tgtgccttgc gagggcgcat
5941 caacgcccaa gtgccagacg atcaccatca atggaacctg caggttacaa atgcaaatgg
6001 gacttcattt gaccccactg aagatgtccc tgcaccattg ggcacgccgg atttcctggc
6061 aaacatctac ggagtcacta gtcagaggaa ccctgacaac acttgccgtg ctcatgatgg
6121 ggttttggca acctggagcc ctaaatttac acccaagtta ggatctgtgg ttttgggtac
6181 ttgggaagaa agtgatcttg atcttaatca gcccaccaga tttacacctg ttggtttgta
6241 tgacacaaac cactttgatc agtggattct acccaattac tctggaagat tgaccttaaa
6301 catgaatttg gcaccctctg ttgcccccct attcccaggt gaacaaatac ttttctttag
6361 gtcccacata ccacttaaag gaggcacttc caatggtgcc attgactgtc tgctccctca
6421 ggagtggatt cagcatttct atcaggaatc agccccgtca cccacagatg ttgctctgat
6481 taggtacacc aaccctgaca cgggccgtgt cctatttgag gccaaactac atagacaggg
6541 gttcatcaca gtagcaaatt ctggttctag acctattgtt gttcctccta atggttattt
6601 taggtttgat tcttgggtta atcagtttta ctctctcgcc cccatgggaa ctgggaatgg
6661 gcgtagaagg gtgcagtaat ggctggagct tttgtagcag ggcttgccgg tgatatagtc
6721 accaatggca ttggttcact tgtgaacgct ggagccaatg caataaacca aaaagtagat
6781 tttgaaaaca acaaacaact acagcaggct tctttcaacc atgacaagga aatgttgcaa
6841 gctcaaattc aggccacaaa acaattacag gctgacatga ttgcgctcag acaaggggtg
6901 ttgaccgcag gcggcttctc ccctactgat gcagcaagag gggcagttaa tgcgcccatg
6961 acgcaagtct tggactggaa tgggactagg tactgggccc ccggagccac gaaaacaact
7021 gctttctccg gcgggttcac aagctctccc aataccagga ctattgattt gcctaggaaa
7081 acatcaacca caccagcccc cacgcctgtg tctagaccta gttcttctgc ttctactgtt
7141 tctacccgct caacaattgt tagcgggact tctggccttt cttcttcgac taggagctct
7201 tttagttccc aacccacttc ctcttcttct cggactagcg aatgggtgcg tagtcaaaac
7261 agggcgctgg agccctacat gaggggagcg ttacaaactg cttacgtgac gcctccctct
7321 agtagagctt ccagcaatgg cacagtctca accgtgccaa aagaagtttt ggactcctgg
7381 acatctgtgt tcaataccca cagacaaccg cttttcgctc atctccgtcg gagaggggag
7441 tcacagg
//