Typing tool
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Complete norovirus genomes
MF421538 | GII.17 | ||
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GII.P17 |
ORF1: 1..5109 ORF2: 5090..6712 ORF3: 6712..7491LOCUS MF421538 7530 bp RNA linear VRL 19-FEB-2019 DEFINITION Norovirus Hu/GII.17/WH2017-36/CHN/2017 nonstructural polyprotein, capsid protein VP1, and capsid protein VP2 genes, complete cds. ACCESSION MF421538 VERSION MF421538.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/WH2017-36/CHN/2017 ORGANISM Norovirus Hu/GII.17/WH2017-36/CHN/2017 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7530) AUTHORS Zhou,X., Kong,D.-G., Li,J., Pang,B.-B., Zhao,Y., Zhou,J.-B., Zhang,T., Xu,J.-Q., Kobayashi,N. and Wang,Y.-H. TITLE An Outbreak of Gastroenteritis Associated with GII.17 Norovirus-Contaminated Secondary Water Supply System in Wuhan, China, 2017 JOURNAL Food Environ Virol (2019) In press REMARK Publication Status: Available-Online prior to print DOI: 10.1007/s12560-019-09371-7 REFERENCE 2 (bases 1 to 7530) AUTHORS Zhou,X., Wang,Y.H., Kong,D.G., Kobayashi,N., Pang,B.B. and Xiong,Y. TITLE Direct Submission JOURNAL Submitted (01-JUL-2017) Division of Microbiology, Wuhan Centers for Disease Prevention & Control, Jianghan North Road 24#, Wuhan, Hubei 430015, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7530 /organism="Norovirus Hu/GII.17/WH2017-36/CHN/2017" /mol_type="genomic RNA" /isolate="Hu/GII.17/WH2017-36/CHN/2017" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2203781" /country="China" /collection_date="17-Feb-2017" /note="genotype: GII.17" CDS 1..5109 /codon_start=1 /product="nonstructural polyprotein" /protein_id="AWS05192.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYMYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTT KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5090..6712 /codon_start=1 /product="capsid protein VP1" /protein_id="AWS05193.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISDNDDFQFQPTKFIPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 6712..7491 /codon_start=1 /product="capsid protein VP2" /protein_id="AWS05194.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac 61 aaggaaaaat cttcaagtga cagcttgttt gctaacatgt ctgtcacttt taagaaagcc 121 ctcggggcgc ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca 181 aggccaccga caccggaatt ggtgaagaga atacctccac ccccacccaa tggcgaggat 241 gaaccaggga tagtgtacaa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact 301 gtggtacaac ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa 361 gtcggcgaag ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc 421 taccactatg ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct 481 gcaataagcc ttgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac 541 actccccagt atttgataga tccaggaact cttaagaact tgagtggaga gactttccca 601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac 661 tcctggctta gcaggagaat gatccaaaga acaactggat tcttcaaacc ttatcaggat 721 tggaacagaa aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct 781 gtcctatgtg ctctctcctc actcttcact agacccatta aggacatcat tggaaagctt 841 agaccactga acattcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg 901 gaatccttga tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct 961 gcgatgattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg 1021 gaacttgtgc ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag 1081 atcggcaaga tgctttcatc agctgcgacc acacttaggg cctgcaagga tctaggatct 1141 tatggattgg agatactcaa attggtcatg aagtggttct tccccaagaa ggaggaggct 1201 aacgaactag ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa 1261 aacaatcaca tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact 1321 cttgacttgg aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc 1381 gtgggtacaa taaacgcatt attggctagg atagcagccg ccaggtcact ggtccacaag 1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca 1501 ggtataggaa agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca 1561 ggcgaccaaa ggattggact ggtacctaga aatggcgtcg accattggga cgcctacaag 1621 ggagaaaggg tggttctgtg ggatgattat ggtatgagca accctataca ggacgcactg 1681 aggctccaag aattggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaac 1741 aaaggaaaag tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca 1801 ccactagact atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca 1861 gacgcacctg acattgagaa ggctaagcgt gacttccctg gccaaccaga catgtggaaa 1921 gaccatttca gaccagactt ctcacacatt aaacttcagc tggcaccaca gggaggtttt 1981 gataaaaatg gcaacacccc acatggcaaa ggtgtggtga agtccctgac gattggttct 2041 ctgatcgcca gggcctccgg cttgctccac gagagaatgg atgaattcga gctccaaggc 2101 tctgacctgc caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattggca 2161 gctgaaaaca aatatggtct tatggacaca ctgagggtcg gcaaccaact gaaaagtgtt 2221 aagaccctgg atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata 2281 gtgtataatg gatgcaccta taccatggaa tctgatggga ggggcaaggt tgtggttgaa 2341 aaggtacaaa acgcaacagt tcaaaccaac aatgaacttg taggggcgct ccaccacctg 2401 agatctgcaa ggataagata ctatgttaaa tgttttcaag aagccattta ctctctactc 2461 caaattgctg gtgcagcctt cgtcacctca cgcatcgtga ggcgcatgaa catatcaaac 2521 ctctggtcga agccacccat cgaggagggt gatgagcctg aagacagagg aggatgcccc 2581 aagcccaggg atgaagatga cctcactatt gactctagag acattaaagt ggaagggaag 2641 aagggcaaga acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc 2701 agtgatgaag agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca 2761 atagaggaat acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc 2821 actgaggagg acttctgtga ggaggaggag atcaaaatcc gccagagaat cttccgaccc 2881 accaggaagc agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc 2941 agaaagagga atccagatga ctttaaacca aaaggaaaat tgtgggctga tgacaacagg 3001 agcgtggatt acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata 3061 gtcaactttg gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca 3121 cacgtcatac caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt 3181 cacaaatctg gagaattttg ccgcttgcgg tttccaaagc caattagacc agacgtgagt 3241 gggatgatct tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg 3301 acaacagggg agctgatgcc tcttgcagtc agaatgggga ctcatgccac aatgaaaatc 3361 caaggtagaa cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaagc 3421 atggatctag gcacaacgcc aggtgactgc ggatgtccat acatgtacaa aaggggcaat 3481 gaccttgtgg tcattggggt gcacactgca gcagctcgtg gaggcaacac ggtcatatgt 3541 gccacacagg gaagtgaagg tgaagccact cttgaaggag gtgacaacaa gggtacctat 3601 tgtggagccc ccattttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc 3661 tggagatcct ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg 3721 agagacccgc gtgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccagcttaag 3781 ccttttacag agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag 3841 actatcatca atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa 3901 gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcaccacgt ccggaagaat 3961 gactattgga gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat 4021 ctcatgtatg aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag 4081 ctcgtgaaaa ctgacaaaat ttatggcaaa atcaagaaaa gactcctgtg gggttctgac 4141 ctctccacaa tgattcgatg cgccagagca tttggtggtc tcatggatga attcaaagca 4201 aattgtatta cactccctat cagagttggt atgaatatga atgaagatgg tcccataata 4261 tttgagaaac actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc 4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag 4381 ccacagctgg cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc 4441 gatttcaaaa tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg 4501 aattctattg cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggt 4561 cctgacatca tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc 4621 acagacataa aattggaccc agagaaattg accacaaagc tcaaagaata tggccttaaa 4681 cccactcggc ccgacaaaac tgaggggccg ttggtgatta gtgaggacct gaatgggttg 4741 actttcctcc gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa 4801 aactccatcc tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag 4861 accatgatac cacacgcaca aagacctgtg cagctcatgg cactactagg agaatcctcc 4921 ctacatggac cctcatttta cagcaaggtt agcaaattag tcatatctga acttaaagag 4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca 5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc 5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaacaa 5161 cgagaccctt cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca 5221 aaataacata attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt 5281 cacagtgtca cccagaaact ctcctggaga aattttatta aacttagagt tgggccctga 5341 tttgaaccct tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga 5401 agttcaggtt ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt 5461 cccgccaaat ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacattt 5521 aatagtagat gttaggactc ttgaaccaat tatgatacca ctccctgatg ttaggaatac 5581 attcttccat tatagtaacc agcctaatag ccgcatgaga ttagtggcta tgctctatac 5641 cccactcaga tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac 5701 taggcctact cctgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac 5761 taagcctttt tccttaccta ttttaaccct ttctgagctc acaaattcga ggttcccagt 5821 ccccatcgat tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg 5881 caggtgtaca cttgatggtg agttacaagg cacaacccag ttgctcccat ctggcatctg 5941 tgcattcaga ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact 6001 gcaaaacctc aatggtacaa catatgaccc aactgatgat gtgccagccc cgctgggtac 6061 acctgacttc aagggcgtcg tgtttgggat ggtaagccaa agaaatgtgg gtaatgatgc 6121 gcctggctca accagagccc aacaggcgtg ggtttcaacc tatagccccc aatttgtccc 6181 caaattaggt tctatcaatc ttagaattag tgataatgat gatttccaat tccagccgac 6241 aaaattcata ccagtgggcg tcaatgatga cgatgatggc cacccgttca gacaatggga 6301 actaccaaac tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc 6361 aaattttcct ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta 6421 caaccaaggt attatagatt gtcttattcc ccaagaatgg atccaacact tctatcagga 6481 atcagcaccc tcccagtcag acgtggccct aatcaggtat gtcaaccccg atacgggacg 6541 tacactgttt gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga 6601 ctatcctctt gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt 6661 ttactcactc gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg 6721 gctttcattg caggattggc aggcgacatg ctcacgtcat ctgtgggctc ccttgtgaac 6781 gcaggggcaa acgccatcaa ccaaaagata gactttgaaa acaacaaaca actccagtct 6841 gcttcctttc agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg 6901 caatctgaaa tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact 6961 gatgcagcaa gaggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact 7021 cgatactggg cgcccaattc cacaaagaca actggctatt cgggacaatt cacctcttca 7081 cctgtgcata tgtctagccc aaatgctcca caatcaaaac ctgcaaagcc taggtctcta 7141 gctccttcct cttcttctag cagtgtctat agtatgtata ctcaatctac tcatttaaca 7201 tctggctctt ctagtaatgc ttcttctgcc tccacaaaat tgacaaattt aagctctggc 7261 tcctctcaaa acagaacagc agagtgggta aatcaacaga gaagtcttag ccctttcatg 7321 agtggcgcac ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg 7381 acggtctcaa ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac 7441 agacagccgc tcttcgcaca cctcagagtg aggggggagt cacgtgttta gtgaaaagaa 7501 ataattggct ataatgtgat ttctttctaa //