Typing tool
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Typing tool
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Complete norovirus genomes
| MF405169 | GII.2 | |
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| GII.P32 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7492
LOCUS MF405169 7536 bp RNA linear VRL 14-AUG-2017
DEFINITION Norovirus GII.2 strain Hu/US/1971/GII.Pf__GII.2/HenrytonSP17,
complete genome.
ACCESSION MF405169
VERSION MF405169.1
KEYWORDS .
SOURCE Norovirus GII.2
ORGANISM Norovirus GII.2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Karangwa,C.K., Parra,G.I., Bok,K., Johnson,J.A., Levenson,E.A. and
Green,K.Y.
TITLE Sequential Norovirus Gastroenteritis Outbreaks in a State Hospital
within a Single Year and the Absence of Herd Immunity
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Karangwa,C.K., Parra,G.I., Bok,K., Johnson,J.A., Levenson,E.A. and
Green,K.Y.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2017) LID/NIAID, NIH, 50 South Drive-MSC8026,
Bethesda, MD 20892, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Bowtie v. v. 2; Sequencher v. v.5
Assembly Name :: Henryton GII.2
Sequencing Technology :: IonTorrent; Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII.2"
/mol_type="genomic RNA"
/strain="Hu/US/1971/GII.Pf__GII.2/HenrytonSP17"
/host="Homo sapiens"
/db_xref="taxon:490039"
/country="USA"
/collection_date="Jan-1971"
/note="genotype: GII.2"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ASO96883.1"
/translation="MKMASTDASAAAAANSNNDNVKSSNDGVFNNMAVTLKRALGARP
KQPTPREKPPKPPRPPTPELIKRIPSPPPNGEDEPIVSFSATGGVSGLPELTTVGQPP
EANTAFSVPPLSLRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
VAKVELTPLSLYWRPVYTPHYLISPDNLKKLHGELFPYTAFENNCYAFCCWVLDLNDS
WLSRRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDL
AKKIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDAYRNDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLVARA
SGLLHERMDEYELQGPSLSTFNFDRNKIAAFRQLAAENKYGLMDTMRVGNQLRNVTTM
AELKQALRNITIKKCQLVYGGSTYTLESDGKGKVMVEKVQNTSIQINNEIAGAVHHLR
CARIRYYVKCVQEAIYSVLQIAGTVFVTSRIVSRMNIQNLWSRPQIEDTDVTTADEGC
PKPRDEEEFVISSDDIKSEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEIKIRQRIFRPTRKQRKEERANLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGITEAFGVPIRQIQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEG
TVATILIKRTTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLDAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGFPHHVRKNEHW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDL
ATMVRCARSFGGLMDELKSHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWD
STQQRAVLAAAMEIMVKFSAEPQLAQVVAEDLLSPSVVDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPGKLTEKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQLYWTKGP
NHEDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5085..6713
/gene="ORF2"
CDS 5085..6713
/gene="ORF2"
/note="180 copies of this approximately 60 kDa protein
forms the viral capsid"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ASO96884.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMFTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNEHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDNHNASGHNQPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDVEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYLPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6713..7492
/gene="ORF3"
CDS 6713..7492
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="ASO96885.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPTRQADLQHAQNRPSSGSSVSSYSTQSSRPTLTTTV
GSSHSAVPSNSTRSTNLSMSTVSRATSRTSEWVRDQNKNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta ccgacgcttc tgctgccgct gctgctaaca gcaacaacga
61 caacgtaaaa tcttcaaatg acggagtgtt taacaacatg gccgtcactc ttaaacgagc
121 cctcggggct cggcctaaac aaccaacccc gagggaaaaa cccccaaaac cccccagacc
181 accaacacca gaattgataa agagaatccc ctccccccca cccaatggcg aggatgagcc
241 aattgtgtca tttagtgcca cgggtggcgt gtctgggttg cccgagctca caactgtcgg
301 gcagccgcct gaggccaaca cggccttcag tgtgcccccg cttagcctaa gggagaatag
361 ggatgccaaa gaacccctaa ccgggaccat tttggaaatg tgggatgggg agatttatca
421 ttatggtctg tatgtggagc gaggccttgt gttgggtgta cataaaccac cagcagccat
481 cagtgtagcc aaagtggagc tgactcccct ttcactgtac tggaggcctg tatacacgcc
541 ccattatctc atctccccag acaacctgaa gaaacttcat ggggagttat ttccctacac
601 ggcgttcgag aacaactgct acgccttctg ctgctgggtt ttggacttga acgattcgtg
661 gttgagcagg aggatgatta gcaggaccac aggcttcttc agaccttacc aagaatggaa
721 caggaagccc ctcccaacca tggacgattc aaaactgaaa aaggttgcaa acatcgtcct
781 gtgtgccttg tcatcgctat ttactaggcc catcaaagat ataatcggaa agcttagacc
841 cctgaatatc ctaaatatct tagcttcatg tgattggact tttgctggca tagtggaatc
901 tctaattctt ttagcagaac tctttggtgt attctggacg cccccagacg tgtctgcgat
961 gatcgcaccc ctactcggcg attacgagtt gcagggccca gaggaccttg ctgtggagct
1021 cgtgccggtc gtaatgggcg ggataggctt ggtgctgggg ttcaccaagg agaaaatagg
1081 caaaatgctc tcctctgctg cttcaacctt aagagcctgc aaagatcttg gagcctatgg
1141 actagagata ctgaaactgg tcatgaaatg gttctttcca aagaaagacg aggccaatga
1201 gttagctatg gtaagagcca ttgaagacgc agtactggac ctagaagcca ttgagaataa
1261 ccatatgacc actctgctca aagataagaa cagtcttgca gcctacatga agaccttaga
1321 tatggaagaa gagaaggcaa ggaaactgtc cacaaagtca gcttcccctg acatcgtggg
1381 cacaatcaat gctttgcttg cacgaatcgc tgccgcacgc tcattagtcc atagagctaa
1441 ggaagagctc tccagcagac cgagaccagt cgtggttatg atttctggca aacctggaat
1501 aggaaaaaca cacttggcta gggatttggc aaagaagata gcctcgaccc tcacaggaga
1561 tcaaagagtg gggcttatcc cgcgcaatgg ggtcgatcat tgggacgctt ataaaggtga
1621 aagggtcgtg ctatgggacg actatggtat gagcaacccc atccatgatg ctctcagact
1681 acaagagctg gcagacacat gccccttaac tttgaactgt gacagaattg agaacaaggg
1741 aaaagtcttt gacagtgatg caatcatcat caccaccaat ttggtcaacc cggcaccact
1801 agactatgtt aactttgagg cctgctccag gcgcattgac ttcctcgtgt atgctgatgc
1861 tcctgaggtt gagaaggcga aacgggactt ccccggccaa ccagacatgt ggaaagatgc
1921 ctatcgcaat gacttctcac atatcaaact gcaactggca ccacagggtg gatttgacaa
1981 gaacggtaac accccccacg gcaaaggtgt gatgaaaacc ctgaccactg gatcgcttgt
2041 tgcgcgcgcc tcaggccttt tgcacgagag aatggatgag tacgaactgc aaggaccatc
2101 cctctcaacc ttcaacttcg accgcaacaa aatcgcggca ttcaggcagc tcgccgctga
2161 aaacaagtat ggtttgatgg acacaatgag ggtgggcaac cagttgagga atgttacaac
2221 tatggctgag ctgaagcagg ccttgaggaa catcacgatc aaaaagtgtc agttagtcta
2281 tggtgggagc acttacactc tcgagtctga tggcaaaggt aaagttatgg ttgaaaaagt
2341 gcaaaacact agcatacaaa tcaacaatga aattgctggg gcagttcacc atctcagatg
2401 tgccagaata agatactatg tgaagtgtgt ccaggaggcc atttactcag tactccaaat
2461 tgccggcaca gtgtttgtta catcacgcat tgtgagccgc atgaacatcc aaaacctatg
2521 gtctaggcca cagatagagg acacagatgt gaccaccgca gatgaagggt gtcctaaacc
2581 tagggatgag gaagagtttg ttatctcttc agatgatatc aagtcagaag ggaaaaaggg
2641 caaaaacaag agtggccggg gcaagaaaca cacagcattc tcaagcaaag gcctcagtga
2701 cgaggagtat gaggagtata agaggatcag agaggagagg aatggcaagt actccataga
2761 agagtatctt caagacagag ataaatacta tgaggaggtg gccattgcaa gagcaactga
2821 agaagacttt tgtgaagaag aggagatcaa aatccgccaa aggatcttca ggcctactcg
2881 gaaacaacgt aaagaagaga gagccaacct cggcctcgtc actggatctg agatcaggaa
2941 aagaaaccca gatgacttca aaccaaaagg gaaactgtgg gctgatgacg accgaagtgt
3001 cgactacaat gaaaggatta gttttgaggc cccacctagc atctggtcca ggatcgtgaa
3061 ctttggttct ggatggggat tctgggtctc acccagtctc ttcataacat caacacatgt
3121 tatacctcaa ggcataaccg aagcttttgg agtgcccata agacagatcc aaatacataa
3181 atcaggtgag ttctgtcgcc tgagattccc aaaacccatc agaacagatg tttcaggaat
3241 gattctggag gagggagcac cggagggcac cgttgctacc atcttgatta aaagaaccac
3301 tggagagttg atgcccctcg cagcacggat gggcacacat gcgactatga aaatccaagg
3361 tcgcacggtg ggtggacaga tggggatgct gcttactggg tccaacgcca agagcatgga
3421 tcttggcacc acacctggtg actgtgggtg cccctacatc tacaagaggg gaaacgacta
3481 tgtggttatt ggtgtccata cagctgctgc ccgtgggggg aacactgtca tctgtgccac
3541 acaagggagt gaaggtgagg caacacttga aggtggcgac aacaagggaa catattgtgg
3601 agcgccaatt ctcggccctg gaagcgctcc aaagctaagc accaaaacca agttctggag
3661 gtcttccacg acaccgctcc cacctgggac gtatgagcca gcatacttgg gaggaaagga
3721 cccccgagtt aaaggtgggc catctctaca acaagtcatg agggatcaac tgaaaccatt
3781 cactgagcct cgtggcaagc ctccaagacc cagtgtcctt gatgcagcca agaaaactat
3841 catcaatgtg ctagagcaaa caatagatcc cccgcaaaag tggacgtacg ctcaagcgtg
3901 tgcgtcactt gacaaaacca cctccagcgg gttcccccac catgtacgta aaaacgaaca
3961 ttggaacggg gagactttca ccggaaaatt ggctgaccag gcctcaaaag caaaccttat
4021 gtttgaggag gggaaacaca tgactccagt ttacacagct gcccttaaag atgaattagt
4081 gaagaccgac aaagtgtatg ggaagatcaa aaagagacta ctttggggtt cggatctggc
4141 cacaatggtg cggtgtgcgc ggtcctttgg gggcctgatg gatgagttaa aatcacactg
4201 cgtaaccctc cccatcaggg ttggcatgaa catgaatgag gacgggccca tagtctttga
4261 gaaacactcc aggtacaggt atcattatga tgcagactac tccaggtggg attcaacaca
4321 acagagggct gtactggctg cagccatgga aattatggta aagttttcag cagaaccaca
4381 gttagcccag gtagttgcag aagatttgct gtctcctagt gtggttgacg tgggcgactt
4441 taaaatttca atcaatgaag gcctaccgtc aggtgtgccg tgcacatccc agtggaattc
4501 catcgcacat tggttactca ccctttgtgc cctctctgaa gtcacagact tgtctcctga
4561 catagtgcag gccaactccc tcttctcctt ctatggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccaggca aactaacaga gaagctgaaa gaatatggtc ttaagcccac
4681 ccgccctgac aagactgagg ggcctttaat tataagtgaa gacctgaatg gcctaacgtt
4741 cctgcggagg acagtcaccc gtgatcctgc aggatggttt ggaagattgg accagagctc
4801 tatactaagg caattgtact ggaccaaagg tcccaaccat gaagaccctt ttgagtcaat
4861 gatcccacac tcccaaaggc ccatacagct catgtcactc ctaggtgaag cagcattgca
4921 tgaaccctca ttctacagca agatcagcaa gttggtgata tctgaattga aggaaggtgg
4981 aatggatttt tacgtgccca gacaggaacc aatgttcagg tggatgagat tctcggattt
5041 gagcacgtgg gagggcgatc gcaatcttgc tcccagtctt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg
5161 tcatggctct tgaacctgta gctggtgccg ccttggcagc tccagttact ggccaaacaa
5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaattcaccg
5281 tttccccgcg caatgcccct ggtgaagtgc tattaaatct agaattgggt ccagaattaa
5341 atccttatct ggcacacttg gcaaggatgt acaacggcta tgctggtggc atggaggtgc
5401 aggtcatgct agctggaaat gcgtttacag ctggtaaatt ggtcttcgcc gctgtgccac
5461 ctcatttccc agttgagaat ctgagcccgc agcaaatcac catgttccct catgtgatta
5521 tagatgttag aactttggaa cctgttttat tgccactccc tgatgttaga aataactttt
5581 tccattataa ccagaaagat gaccccaaaa tgaggattgt ggccatgctt tatactcccc
5641 tcaggtcgaa tggctctggt gatgatgtgt ttacagtttc ttgcagggtg ttaaccaggc
5701 cctcccctga ctttgacttt acatacctgg taccaccaac agtagagtct aaaacaaaac
5761 catttactct cccaatcctc acacttggtg agttatccaa ttccagattt cctgtgtcca
5821 tagatcaaat gttcactagc cccaacgagg tcatatcagt gcagtgtcag aatgggagat
5881 gtacgctgga tggggagctc caaggaacaa cacagctcca ggttagcggt atctgtgcat
5941 tcaagggaga ggtgactgct cacttgcacg ataatgaaca cctttataac atcaccatca
6001 caaatttaaa tggatcccct tttgaccctt ctgaggacat tcctgcccca ctgggtgtac
6061 cagactttca agggagagtt tttggtgtca tcagccaaag agacaaccac aatgccagtg
6121 gacataacca gcctgcaaac aggggccatg atgccgtggt tcccacatac acagcccaat
6181 acaccccaaa gttaggccag atccaaattg gcacgtggca gactgatgac ctaacagtca
6241 atcagcctgt caaattcacc ccagttggcc ttaatgatgt ggagcatttc aatcaatggg
6301 tggtccccag gtatgctggt gccctaaacc taaacacaaa tcttgcccct tctgttgcac
6361 cggtgtttcc aggggaacga ctgctcttct tcagatcata cctccccctc aagggtggtt
6421 atggcaaccc agccattgac tgcctgttac cacaagaatg ggtgcagcac ttctaccaag
6481 aggccgcccc ttcaatgagt gaggtggccc ttgttagata cattaaccca gacaccggtc
6541 gggcgctgtt tgaggccaag cttcacagag ctggtttcat gacagtctcg agcaacacca
6601 gtgccccagt agttgtacct gccaatgggt atttcagatt tgactcttgg gtgaaccaat
6661 tttattcttt agcccccatg ggaactggga atgggcgtag aagagttcaa taatggctgg
6721 agcttttata gctggtcttg caggagacgt gctcagtaat gggctcggct cattgattaa
6781 tgcaggtgct aatgcaataa atcagagggc agaatttgat tttaatcaga aattgcaaca
6841 aaattctttt aatcatgata aggaaatgtt acaggctcaa gttcaagcaa ctaagcagct
6901 gcaagcagac atgatggcta taaagcaagg ggtcttgacc gctggcggct tctcccctgc
6961 tgatgcagcc agaggcgcag ttaacgcgcc catgacacaa gcgctggact ggaatggtac
7021 aaggtattgg gcaccaggtt ccatgaggac aacatcttac tctggaaggt tcacatcgac
7081 tgctccaaca aggcaggccg acttgcagca tgctcaaaac cgaccgtcga gtggttcttc
7141 tgtgtcctcc tattccactc aatcttcaag accaaccctg actacaacag tggggtcttc
7201 acacagtgca gtcccatcca attcgactcg gagcacaaat ctctctatgt ccactgtttc
7261 tagagccact tctagaacca gtgaatgggt cagggatcaa aataaaaatt tggaacccta
7321 tatgcatggt gccttacaga cagcttttgt cacaccacca tccagcaggg catccgacgg
7381 gacggtctca accgttccca agggtgtttt ggactcctgg acacctgcgt ttaacacccg
7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagcat agtgaaaagg
7501 taaaatctag cttaaaatga attgatctta tctttt
//