Typing tool
|
Complete norovirus genomes
MF167652 | GII.2 | ||
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GII.P16 |
ORF1: 1..5100 ORF2: 5081..6709 ORF3: 6709..7488LOCUS MF167652 7502 bp RNA linear VRL 30-SEP-2017 DEFINITION Norovirus Hu/JSWX201703-10/CHN non-structural polyprotein, capsid protein, and minor structural protein genes, complete cds. ACCESSION MF167652 VERSION MF167652.1 KEYWORDS . SOURCE Norovirus Hu/JSWX201703-10/CHN ORGANISM Norovirus Hu/JSWX201703-10/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7502) AUTHORS Fu,J.-G. and Ai,J. TITLE Norovirus outbreak sequence in Jiangsu, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7502) AUTHORS Fu,J.-G. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2017) Department of Acute Infectious Disease Control and Prevention, Jiangsu Provincial Centre for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7502 /organism="Norovirus Hu/JSWX201703-10/CHN" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2029702" /country="China" /collection_date="20-Mar-2017" CDS 1..5100 /codon_start=1 /product="non-structural polyprotein" /protein_id="ASV60381.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAVLEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE APKSEDGEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" CDS 5081..6709 /codon_start=1 /product="capsid protein" /protein_id="ASV60382.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 6709..7488 /codon_start=1 /product="minor structural protein" /protein_id="ASV60383.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQV" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag 61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc 121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca 181 actcccgagt tggtcaagag gataccccct cctccaccta atggcgaaga agaagaagaa 241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tgcccgagct cacaacagtc 301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt gagagaaaac 361 agggaggcca aggagccgct aacaggggca gtattagaga tgtgggatgg agagatatac 421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc 481 ataagcatgg caagagtgga gctgacgccg ttgtcattgt actggcgtgt ggtatacact 541 ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggc attcccttac 601 accgcctttg acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca 661 tggcttagca ggaggatggt acaaagaaca acgggcttct tcagacctta ccaagagtgg 721 aacagaaaac ccctgcctac catggatgac tccaaaatta agaaggtagc aaatatattc 781 ctatgttcat tgtccacatt attcaccaga cccataaaag acctcatagg aaaaattaaa 841 ccattgaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag 901 tctctgatat tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct 961 atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa 1021 ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa agagaaaatt 1081 ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gcaaagatct tggtgcctat 1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat 1201 gagctagcta tggtgagggc catagaggat gctgtactag accttgaggc aatagaaaat 1261 aaccacatga caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg 1321 gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc tgacatagtt 1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc 1441 aaagaagagc tatctagcag gataaggcca gtagttgtta tgatatctgg caaaccagga 1501 ataggcaaaa ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg 1561 gatcaaagag tcggactcat accacgaaac ggtgtggacc attgggatgc atacaaaggt 1621 gagagagtcg tgctgtggga cgactatggc atgagtaacc ccattcatga tgctcttcgc 1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat cgaaaataag 1741 ggaaaagttt ttgacagtga agtcataata attacaacaa accttgccaa tccagcccca 1801 cttgattatg tcaactttga ggcctgttcc aggaggattg atttcctggt gtacgctgag 1861 gcaccagaag tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaggac 1921 gctttcaagc cggacttttc acacatcaag ctacagcttg caccccaagg cggctttgac 1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg 2041 attgcccgtg catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc 2101 acaatcacca ccttcaattt cgaccggaac agaatcacgg cattcagaca attggctgca 2161 gaaaacaagt atggattggt ggataccatg aaagttggca atcaattaaa aggagtgaaa 2221 accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccagatcatc 2281 tacggtggtt ccacgtatga ccttgaatct gacggcaagg gcaaagtttt ggtggaaaag 2341 gtcaagaaca cctctgtaca gaccaataac gagttggctg gggctctgca ccatctcaaa 2401 catgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc catcatacaa 2461 attgccggcg ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc 2521 tggtcgaagc cacaactaga tcaaaatgaa tcagagacta aggaagaggc ccccaagtca 2581 gaagatggcg agttcattat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa 2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag 2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag 2761 tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa 2821 gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa 2881 caaagaaagg aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaaaaga 2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac 3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt 3061 ggttctggct ggggcttctg ggtgtcacca agccttttca taacatcaac tcatgtaatc 3121 cccgcaggca taacagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca 3181 ggcgaatttt gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc 3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga 3301 gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc 3361 atggttggcg gacagatggg tatgttgctc actggatcaa atgctaaagg gatggacttg 3421 ggaacaactc ctggtgattg tggctgtcct tacatctata aaaggggcaa tgactatata 3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg tgccacacag 3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca 3601 cccattctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggagatca 3661 tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggtgg ccgcgatccg 3721 cgtgttaagg gtgggccttc cctgcagcag gtaatgagag accagttgaa gccattcact 3781 gaacccaggg gcaaacctcc aagaccaagt gtattggaag cagccaaaca aaccatcatc 3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc 3901 tcacttgaca aaaccacctc cagcgggcac ccccatcacg tccgaaagaa tgaattctgg 3961 aatggtgaga ccttcactgg taaactggca gaccaagcat caaaagcaaa cctaatgttt 4021 gaggaaggga aacacatgac accagtgtac acagcagcac tcaaggacga gctagtcaag 4081 actgagaaaa tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc 4141 atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc acactgcata 4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa 4261 cattccagat acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag 4321 agggcagtac tagcagcagc cttggaaatt atggtcagat tctctgcaga accacaattg 4381 gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa 4441 attacaataa atgaagggct cccttctggt gtgccatgca cttctcaatg gaactccatc 4501 gcacactggc tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgatatc 4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata 4621 aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctaaa accaacccgc 4681 ccagacaaaa ccgagggacc cctgattatc agtgaagatt tgaacggtct cactttcctc 4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt 4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag accccaacga gacaatgata 4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga 4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg 4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aatttcgtga atgaagatgg cgtcgaatga 5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat 5161 ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat 5221 tatagaccct tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtttc 5281 tccccgaaat gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc 5341 ttatctggca catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg aggtgcaggt 5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacccca 5461 cttcccggtt gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga 5521 tgtgagaacc ctggaacctg ttttattacc actccctgat gttaggaata acttcttcca 5581 ttataaccag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag 5641 gtctaatggt tcaggtgatg atgtgtttac agtctcctgt agagtgttga ctagaccttc 5701 ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa caaagccatt 5761 caccctccca atcctcacac ttggggaact ttccaattct aggttcccag tgtccataga 5821 ccagatgtac accagcccta atgaaattat atcagtgcag tgtcaaaatg gtaggtgcac 5881 actggacggg gagctccaag ggacaacaca actccaagtc agtggcattt gtgctttcaa 5941 aggtgaagtg accgcccact tgcatgacaa tgatcaccta tataatgtca ccatcacaaa 6001 cttgaatggg tccccttttg atccctccga ggatatccct gcccctctgg gtgtgcctga 6061 cttccaggga agggtttttg gtatcatctc ccaaagagat aaacacaata gtcctgggca 6121 taatgaacca gcaaacaggg gacacgacgc tgtggtccct acttacacag cacagtacac 6181 tccaaaactt ggacaaattc aaattggcac atggcaaact gacgacctta cagtcaacca 6241 accagtcaaa ttcaccccag ttggactcaa tgacactgaa cactttaacc aatgggtggt 6301 ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgctccagt 6361 atttccagga gagcgcctgc tcttcttcag atcatacatt cccctcaagg gcggttatgg 6421 aaacccagcc attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc 6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc 6541 actgtttgag gccaagctcc acagagctgg tttcatgaca gtctcgagca acaccagtgc 6601 cccggtggtt gtgcctgcca acgggtactt cagatttgat tcttgggtga accaatttta 6661 ttctctcgcc cccatgggaa ctgggaatgg gcgtagaagg gttcaataat ggctggagct 6721 tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt aatcaatgca 6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcagaaatt gcagcaaaat 6841 tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag 6901 gcagacatga tggctataaa acaaggggtc ttgaccgctg gcggcttttc ccctgctgat 6961 gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa tggcacaagg 7021 tattgggcac caaactccat gaggaccaca tcttattctg gaaaattcac atcaaccgcc 7081 ccagtgaggc aagctgactt ccagcacacc caaagccggc cttcgagtgg ctcctctgtg 7141 tcttcctttg ccactcagtc ttcaaggcca actctgacta caaccactgg ttcctcacat 7201 ggcacagcct catcaaattc aactcgcagc acaagcctct cccaatcaac ggtctccaga 7261 gctacatcta ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg 7321 catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca 7381 gtctcaaccg tccctaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcaga 7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagtttagtg aaaaggtgaa 7501 aa //