Typing tool
|
Complete norovirus genomes
MF167651 | GII.2 | ||
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GII.P16 |
ORF1: 1..5100 ORF2: 5081..6709 ORF3: 6709..7488LOCUS MF167651 7502 bp RNA linear VRL 30-SEP-2017 DEFINITION Norovirus Hu/JSCZ201703-22/CHN non-structural polyprotein, capsid protein, and minor structural protein genes, complete cds. ACCESSION MF167651 VERSION MF167651.1 KEYWORDS . SOURCE Norovirus Hu/JSCZ201703-22/CHN ORGANISM Norovirus Hu/JSCZ201703-22/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7502) AUTHORS Fu,J.-G. and Ai,J. TITLE Norovirus outbreak sequence in Jiangsu, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7502) AUTHORS Fu,J.-G. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2017) Department of Acute Infectious Disease Control and Prevention, Jiangsu Provincial Centre for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7502 /organism="Norovirus Hu/JSCZ201703-22/CHN" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2029701" /country="China" /collection_date="20-Mar-2017" CDS 1..5100 /codon_start=1 /product="non-structural polyprotein" /protein_id="ASV60378.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA VSMARVELTPLSLYWRVVYTPQYLIPPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVK TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE APKSGDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGRIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGS NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" CDS 5081..6709 /codon_start=1 /product="capsid protein" /protein_id="ASV60379.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDRHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 6709..7488 /codon_start=1 /product="minor structural protein" /protein_id="ASV60380.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFKHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GPSHGTVSSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag 61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc 121 ggggctaggc ccaagcagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca 181 actcccgagt tggtcaagag gataccccct cctccaccta atggcgaaga agaagaagag 241 ccagtcatta ggtatgaggt taaaagtggg atctctggcc tgcccgagct cacaacagtc 301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt aagagaaaac 361 agggaggcca aggaaccgct aacaggggca atattagaga tgtgggatgg agagatatac 421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc 481 gtaagcatgg caagagtgga gctgacgccg ctgtcattgt actggcgtgt agtgtacact 541 ccccaatacc tcatcccccc tgaaactctc aggagactca acggagaggc attcccttac 601 accgcctttg acaataactg ctatgccttt tgctgctggg tgttagacct caatgactca 661 tggcttagca ggaggatggt gcaaagaaca acgggcttct tcagacctta ccaagagtgg 721 aacagaaaac ccctgcccac catggatgac tccaaaatta agaaggtagc aaatatattc 781 ctatgttcat tgtccacatt attcaccaga cccataaaag acctcatagg aaaaattaaa 841 ccattaaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag 901 tctctgatat tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct 961 atgatcgctc ccttactcgg ggactacgag ttgcaggggc cagaagacct cgccgttgaa 1021 cttgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa agagaaaatt 1081 ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gcaaagatct tggtgcctat 1141 ggcttagaga tacttaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat 1201 gagttagcca tggtgagggc catagaggat gctgtactag atcttgaggc aatagaaaat 1261 aaccacatga caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg 1321 gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc tgacatagtt 1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc 1441 aaggaagagc tatctagcag gataagacca gtagttgtta tgatatctgg caaaccagga 1501 ataggcaaaa ctcatctggc cagggaggtg gcaagaaagg tggcatccac cctcacaggg 1561 gatcaaagag tcggactcat accaagaaac ggtgtggacc attgggatgc atacaaaggt 1621 gagagagtcg tgctgtggga cgactatggc atgagtaacc ccattcatga tgctcttcgc 1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaataag 1741 ggaaaagttt ttgacagtga ggtcataata attacaacaa accttgccaa tccagcccca 1801 cttgattatg ttaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag 1861 gcaccagaag tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaggac 1921 gccttcaagc cggacttttc acacatcaag ctacagcttg caccccaggg cggctttgac 1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg 2041 attgcccgtg catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc 2101 acaatcacca ccttcaattt cgaccggaac agaatcacag cattcagaca attggctgca 2161 gaaaacaagt atggattggt ggataccatg agagttggca atcaactaaa aggagtgaaa 2221 accatggagg aacttaaaca agcaatcagg aatgtgacca tcaagaggtg ccggatcatc 2281 tacggcggct ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag 2341 gtcaagaaca cctctgtaca gaccaacaac gagttggctg gggccctgca ccatctcaaa 2401 cacgcccgaa tcaggtacta tgttaaatgt gtgcaagaag cagtctattc catcatacaa 2461 attgccggcg ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc 2521 tggtcgaagc cacaattaga tcaaaatgaa tcagagacta aggaagaggc ccccaagtca 2581 ggagatgacg agttcatcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa 2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag 2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc catagaggag 2761 tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa 2821 gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa 2881 caaagaaagg aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaaaaga 2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac 3001 tataatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt 3061 ggttctggct ggggcttctg ggtatcacca agccttttca taacatcaac tcatgtaatc 3121 cccgcaggca taacagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca 3181 ggtgaatttt gccgattcag attcccaaaa ccaattagac cagatgtgac agggatgatc 3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga 3301 gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc 3361 atggttggcg gacagatggg tatgttgctc actggatcaa atgctaaagg aatggatttg 3421 ggaacaactc ctggtgactg tggctgtcct tacatctata aaaggggcaa tgactatata 3481 gccattgggg tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag 3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca 3601 cccattctag gccctggggg tgcaccaaaa ttgagtacca aaaccaaatt ttggaggtca 3661 tcgaacacgc ccctcccacc agggacatat gaacctgcct acctcggtgg ccgtgatccg 3721 cgtgttaagg gtgggccctc cctacagcag gtaatgagag accagttgaa gccattcact 3781 gaacccaggg gcaaacctcc aagaccaagt gtgttggaag cagccaaaca aaccatcatc 3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc 3901 tcacttgaca aaaccacctc cagcgggcat ccctatcacg tccgaaagaa tgaattctgg 3961 aatggtgaga ccttcactgg taaattggca gatcaagcat caaaagcaaa cctaatgttt 4021 gaggaaggga aacacatgac accagtgtac acagcagcac tcaaggacga gctagtcaag 4081 actgagaaaa tctatggaag gatcaagaag agactgctct ggggctctga cttgtccacc 4141 atgatccggt gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata 4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa 4261 cattccagat ataaatatca ctatgatgca gactactctc gttgggattc aacacaacag 4321 agggcagtac tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg 4381 gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa 4441 attacaataa atgaagggct cccctctggt gtgccatgca cttctcaatg gaactccatc 4501 gcacactggt tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt 4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata 4621 aagttggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc 4681 ccagacaaaa ccgagggacc cctgattatc agtgaagatt tgaacggact cactttcctc 4741 cgaaggacag tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt 4801 ttgaggcaga tgtactggac tagaggatca aatcatgaag accccaatga gacaatgata 4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga 4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg 4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga 5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat 5161 ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcactggtc aaacaaatat 5221 tatagaccct tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc 5281 tccccgtaat gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc 5341 ttatctggca catttagcaa gaatgtacaa tgggtatgct ggtgggatgg aggtgcaggt 5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacctca 5461 cttcccagtt gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga 5521 tgtgagaacc ttggaacctg ttttgttacc actccctgat gttaggaata atttcttcca 5581 ttataatcag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag 5641 gtctaatggt tcaggtgatg atgtgttcac agtctcctgc agagtgttga ctagaccttc 5701 ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa caaaaccatt 5761 caccctccca atcctcacac ttggggaact ttccaattcc aggttcccag tgtccataga 5821 ccagatgtat accagcccta atgaagttat atcagtgcag tgtcaaaatg gtaggtgcac 5881 actggacggg gagctccagg ggacaacaca actccaagtc agtggcattt gtgctttcaa 5941 aggtgaagtg accgcccact tgcatgacaa tgatcaccta tataatgtta ccatcacaaa 6001 cttgaatggg tccccttttg atccctccga ggatatccct gcccctctgg gtgtgcctga 6061 tttccaggga agggtttttg gtatcatctc ccaaagagac agacacaata gtcctgggca 6121 taatgaacca gcaaacaggg gacacgacgc tgtggtcccc acttacacag cacagtacac 6181 tccaaaactg ggacaaattc aaattggcac atggcagact gacgacctta cagtcaacca 6241 accagtcaaa ttcaccccag ttggactcaa tgacactgaa cattttaacc aatgggtggt 6301 ccccaggtat gctggtgccc tgaacctcaa tacaaacctt gccccttctg ttgctccagt 6361 atttccagga gagcgcctgc tcttcttcag atcatacatt cccctcaagg gcggttatgg 6421 aaacccagcc attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc 6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc 6541 actgtttgag gccaagctcc acagagctgg tttcatgaca gtctcgagca acaccagtgc 6601 cccggtggtt gtgcctgcca acggatactt cagatttgat tcttgggtga accaattcta 6661 ttctctcgcc cccatgggaa ctgggaatgg gcgtagaagg gttcaataat ggctggagct 6721 tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt aatcaatgca 6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcagaaatt gcagcaaaat 6841 tcttttaaac atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag 6901 gcagacatga tggctataaa acaaggggtc ttgaccgctg gcggcttttc ccctgctgat 6961 gcagccagag gtgctgtgaa cgcgcccatg acacaagcgc tggattggaa tggtacaagg 7021 tattgggcac caaactccat gaggaccaca tcttattctg gaaaattcac atcaaccgcc 7081 ccagtgaggc aggccgactt ccaacacacc caaagccggc cttcgagtgg ctcctctgtg 7141 tcttcctttg ccactcagtc ttcaaggcca actctgacca caaccactgg tccctcacat 7201 ggcacagtct catcaaattc aactcgcagc acaagcctct cccaatcaac ggtctccaga 7261 gctacatcta ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg 7321 catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca 7381 gtctcaaccg tcccgaaagg tgttttggac tcctggacac ctgcgttcaa cacccgcagg 7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagcttagtg aaaaggtgaa 7501 aa //