Typing tool
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Typing tool
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Complete norovirus genomes
| LN854568 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS LN854568 7550 bp RNA linear VRL 12-JUN-2015
DEFINITION Norovirus GII/Hu/NL/2014/GII.6/Groningen, complete genome.
ACCESSION LN854568
VERSION LN854568.1
KEYWORDS complete genome.
SOURCE Norovirus GII/Hu/NL/2014/GII.6/Groningen
ORGANISM Norovirus GII/Hu/NL/2014/GII.6/Groningen
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Bavelaar,H., Rahamat-Langendoen,J., Niesters,H.G.M., Zoll,J. and
Melchers,W.J.G.
TITLE Whole genome sequencing of faecal samples as a tool for the
diagnosis and genetic characterization of norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7550)
AUTHORS Zoll,J.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2015) Medical Microbiology, RADBOUDUMC, PO Box
9101, 6500 HB Nijmegen, NETHERLANDS
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GII/Hu/NL/2014/GII.6/Groningen"
/mol_type="genomic RNA"
/strain="GII/Hu/NL/2014/GII.6/Groningen"
/host="Homo sapiens"
/db_xref="taxon:1665649"
/note="genotype:GII.6"
gene 5..5098
/gene="POL"
CDS 5..5098
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="CRL46966.1"
/translation="MKMASNDATAAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPLVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6722
/gene="VP1"
CDS 5079..6722
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="CRL46967.1"
/translation="MKMASNDAAPSNDGAANLVPEATSEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSIGATRAHEVHIDTTNPRYAPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..7498
/gene="VP2"
CDS 6722..7498
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="CRL46968.1"
/translation="MAGAFLAGLVGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTSPRSDPPKIKVNSDSASVYSSASSAPSQST
HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagccaaa actctgtcaa
61 cgacagtatc aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacattaa
121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 tcagcactgc cccttagtta agattgggac caagacattg acagttcccc ctgagccccc
241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa acagtgcgcg ggctaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac accgtccccc cattgagtga
361 aagggagcac aggccagcca ctgaaccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaagcc
481 ccctgcagca ataagcctcg cgacgataga gctcacaccc atatcccttt attggaggcc
541 cgtttacacc cccaactatc tggtctgtcc agacacgttg aaaggccttg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagca ggagaagcat ctctaggact accggcttct tcaagccata
721 tcagtcctgg aacaggaaac cccttccaac cgttgatgat ggaaagatca agaaggtggc
781 caacgcaatt ctctgtgcac ttggatcact gttttcaaaa ccaatcaagg acctattggg
841 caaactcaaa ccattgaacc tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagtcatcc taatggcgga acttttcaac atcttttgga caccgccaga
961 tgtttccagt ttcatagcct ccctgatagg tgattttgaa ttacaagggc ctgaggacct
1021 ggctgtggag cttgtccccg tggtcatggg tggcatagga atggttctcg gctttactgc
1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctacgggcat gcaaagactt
1141 ggggaattat gcccttgaca tattgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccctaagggc gattgaggat gccgtcctgg acatggaagc
1261 tataggaaat aaccatctca caaccctcct caaggacaag gatagcctca cggctttcat
1321 gaagactcta gatctagaag aggagaaggc aaggaagctg tccaccaagt catcctcgcc
1381 agacatcgtc ggcactatta atgccatact ggccagaata gctgctgcca ggtccctctt
1441 gcacaaggct aaagaagaaa tgtttagcag gatcagaccc gtggttgtca tgatctcggg
1501 tagacctggc attggtaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagcggc gaccagagag taggactcgt cccacgcaac ggggtcgatc attgggacgc
1621 ctacagggga gagagggtgg tcttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagt tggccgacac ctgcccagta actctaaact gtgataggat
1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttagtcaa
1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaagggtcg actttctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagat ttccccggcc aacctgacat
1921 gtggaaggac cattttaagc cagacttttc ccacataaaa ctgactctag ccccacaggg
1981 tggatttgac aagaatggca acaccccgca tggtaagggc actatgcgat ccctaaccca
2041 gggttccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcaact
2101 ccaggggaac gaccttcaaa catacaactt tgacaccaac agggtctctg catttaggaa
2161 gctggccgca gacaacaagt atgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttggagg atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacagaaact ccaaataccg agtctcttct aatggtaaag gttctgtctc
2341 tgttgacaaa gttgaggacc aaacatccca gactgcaaac gaagtgggtg cagcactcct
2401 tagactcagg caggcaagag ccagatacta tgtcagctgc ttccaagatc tcgtttacac
2461 tctaatacag gtcgccggag catcattcgt tgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaagtggc
2581 ccaaggcaga tgggagattg agcccaagga cacagaacca gaaggtaaga agggtaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagc aaaggcctaa gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata
2761 cctgcaagac cgggatcgct attatgagga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca cgaagaaaca
2881 gaggaaggaa gaaagggggg tgcttggttt ggtcactggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccga agggtaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggcgcctcc gagtgtctgg tcgagaatag tcccattggg
3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacac acgtcctgcc
3121 taaggggatt aaggaacttt ttggagttga aatcaaacag attcaaatcc ataagtctgg
3181 agagttctgc aggttcaggt tcccgagacc aattagacca gatgtcacag ggctcgtgtt
3241 ggaggaaggc gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac gcatgcatcc atgaaaatac agggcaggac
3361 cgtcggtggc cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcgg cagcccgggg aggcaacact gtcatatgtg ccactcaagg
3541 acaagatggg gaagcagtcc ttgagggaaa tgagaacctt ggcacttact gcggtgcccc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgctcatc
3661 accagacgcc ttgccgccag gcacttatga gcctgcctac ttgggaggta aggaccccag
3721 agtggaaaaa ggaccatctc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccta gacctgcagt cttagaagag gccaaaaaga cagtgatgaa
3841 tgttctagag caaaccattg accctgctaa gccgtggacc tattcccaag catgtgcctc
3901 actggacaag accacttcca gtggtagccc ccatcatgtc aggaaaaatg accattggaa
3961 tggggaatcc ttcactggcc cccttgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac
4081 tgacaagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gttgcatagc
4201 cctcccatgt agggtgggga tgaacatgaa tgaagatggt cccatcatat ttgacaaaca
4261 ttctaagtat aggtatcatt atgatgctga ctattccagg tgggactcaa cccagcaaag
4321 gagcattctc tcggccgcta tggaggtgat ggtgcggttc tctgccgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg atttcgtcat
4441 ctcagtccag gagggtctgc catcaggggt tccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctaaccttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttga cacagaaact cagagagtat ggcctggtcc ccactcgacc
4681 tgacaaaact gagggtcccc tcgtaataac tgaagacctc accggcctaa cgttcctgcg
4741 taggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggaccaag attcaatcct
4801 cagacagttg tactggacaa ggggccccaa tcatgagaac ccatatgaga gcatggtccc
4861 tcattcccag cgggctacac agcttatggc ccttctcggt gaggcttcac tgcatggccc
4921 ccagttttac aagaaggtta gcaagatggt cattagtgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 gtgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccagt gaggttatgg
5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggccaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaatcctt
5341 atctgagtca cttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 ttcctgttga gaacattagt gcagcccaaa ttacaatgtg cccccatgta attgttgatg
5521 tgagacagct tgagccagtg cttttgcccc tccctgacat aaggaataga ttctttcatt
5581 ataatcagga aaataccccc cggatgagac ttgtggctat gttgtataca ccccttagag
5641 caaattctgg tgaggatgtg tttacggtgt cttgcagagt tctgacccgc cctgcccccg
5701 actttgagtt cacgttcttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
5761 tccctatttt aactcttggt gagctatcca actccagatt ccccgctccg atagacatgt
5821 tgtacactga ccctaatgag gcaattgtgg tgcaaccaca aaatggcagg tgcactctag
5881 atggaacact tcaagggacc acccaactgg tacccaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
6061 aggtgccagc agttttgggt gccatagact tcaaaggaac tgtgtttggg gtcgctagtc
6121 aaagaaacac cacagggagc tctataggag caacccgcgc ccatgaagtg catatagata
6181 ccacaaaccc tagatatgcc ccaaagcttg gctctgtgtt gatgtattct gaatctactg
6241 attttgatga tggacaaccc acccgcttca cccccattgg catgggagcc gatgattggc
6301 accaatggga attacccgag tattctggtc accttactct taacatgaat ttggcccccg
6361 cagttgcccc tgctttccct ggtgagcgca tcctcttctt cagatcagtg gtgccatctg
6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
6481 tttaccagga ggccgctcca tcacagtctg cggtggctct catcagatat gtcaaccctg
6541 acactggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
6661 tcaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcagg agagttcaat
6721 aatggcagga gcatttttag ctggattggt aggtgacgcc ataacaagtg gtgtcgggtc
6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gagtatgatt ttaataaaca
6841 gctccaattg gcatccttca aacatgacaa ggagatgttg cagtcacaag tactggccac
6901 taaacagctc cagcaggaaa tgatgaacat aaggcaaggg gtcttgtccg ctggcggctt
6961 ttcccctaca gatgccgcga gaggtgctgt gaacgcgccg atgacaaaaa ttttggattg
7021 gaatggaaca aggtacttcg ccccaaatag tatgaagaca accagttatt cgggccagtt
7081 ttccagcaac cctgtacata ggcaacccac ttcaccccgt tctgaccccc caaaaatcaa
7141 ggttaatagt gattctgcta gtgtgtatag ttctgcatct tctgctcctt cacaatcaac
7201 ccactcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagc
7261 tgcttccact ctatctagaa ccagtgactg ggtgagagga caaaatgaga ggcttagccc
7321 gtttatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca aggcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgtttaa
7441 tacccatagg cagcctctct tcgctcatgt gcgcaggcga ggggagtcac agatttagtg
7501 aaaagattga ttaggttttc tttctttctt cttttccttt tctttctttt
//