Typing tool
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Typing tool
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Complete norovirus genomes
| LN854564 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS LN854564 7691 bp RNA linear VRL 12-JUN-2015
DEFINITION Norovirus GI/Hu/NL/2012/GI.6/Groningen, complete genome.
ACCESSION LN854564
VERSION LN854564.1
KEYWORDS complete genome.
SOURCE Norovirus GI/Hu/NL/2012/GI.6/Groningen
ORGANISM Norovirus GI/Hu/NL/2012/GI.6/Groningen
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Bavelaar,H., Rahamat-Langendoen,J., Niesters,H.G.M., Zoll,J. and
Melchers,W.J.G.
TITLE Whole genome sequencing of faecal samples as a tool for the
diagnosis and genetic characterization of norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7691)
AUTHORS Zoll,J.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2015) Medical Microbiology, RADBOUDUMC, PO Box
9101, 6500 HB Nijmegen, NETHERLANDS
FEATURES Location/Qualifiers
source 1..7691
/organism="Norovirus GI/Hu/NL/2012/GI.6/Groningen"
/mol_type="genomic RNA"
/strain="GI/Hu/NL/2012/GI.6/Groningen"
/host="Homo sapiens"
/db_xref="taxon:1665645"
/note="genotype:GI.6"
gene 5..5371
/gene="POL"
CDS 5..5371
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="CRL46954.1"
/translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNP
IKIKSTEMALGLIGKTTQGAAGANDLPPKQQRDRPPRTQEEVQYDMGWTERPMDQNVK
SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVKWSVRDGVDL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFVASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDRVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFKPDFSHMKMELAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMEGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDVVDKYGLCETEEDEEVVHTEMPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEA
SLHGEKFYRKISSKVIQEVKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
gene 5355..6977
/gene="VP1"
CDS 5355..6977
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="CRL46955.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="VP2"
CDS 6977..7606
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="CRL46956.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPASSATTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcgactaat gttgcaagca ataacaatgc
61 taacaacact agtgctacat ctcgattttt atcgagattt aggggtttag gtggtggcgc
121 gagcccccct aaccccataa agattaaaag cacagaaatg gccttgggtt tgattggcaa
181 gacaacccaa ggggcagcag gggccaatga cctgccacct aaacagcaaa gagaccgacc
241 ccctaggacc caagaggaag ttcagtacga catgggatgg actgaacggc ctatggacca
301 gaatgttaag tcatgggagg aacttgatac ctctaccaag gaagagatct tggacagcca
361 caaagaatgg ttcgatgctg gcggtttggg tccatgtaca atgccctcaa cttgtgaaca
421 ggctaaggat gatagcccgc ctggtgagca agtcaaatgg tcagtgcgtg atggagttga
481 ccttggagtg aatcgcctca caacggtgag tggccccgag tggaatctct gtcctctacc
541 ccccattgac ctaaggaata tggaaccagc tagcgaaccc accattggag acatgataga
601 gttttatgaa ggtcatatct accactactc catatacata gggcagggaa agacagttgg
661 tgtgcattcc ccacaggcgg cattctcagt ggccagagta accatccaac ccatagctgc
721 ttggtggagg gtttgctaca taccccagcc caaacataga ctgagttatg accagctcaa
781 ggagttggaa aatgaacctt ggccatatgc agccatcacc aacaattgtt ttgagttttg
841 ctgtcaagtt atgaaccttg aggacacatg gttacagagg cgactaataa catcaggtag
901 attccatcac ccttcccagt cttggtcaca acagacccct gaatttcagc aggatagcaa
961 gctggaattg gttagagatg ccatactggc cgcggtgaat ggccttgttt cacaaccctt
1021 taaaaatttc ttgggcaagc tcaagcccct taacgtgtta aacatcttat ctaactgtga
1081 ttggaccttc atgggggtgg tagagatggt tatactactt cttgagctct ttggcgtgtt
1141 ctggaatccg cccgatgtgt ctaattttgt agcatctctc ctccctgact tccacctcca
1201 ggggccagaa gacctagccc gggatctggt gccagtcatt cttggtggca tagggttagc
1261 cattggattt accagagata gggtcactaa agtcatgaaa agtgctgtag atgggctccg
1321 ggccgccacg cagctagggc aatacggatt ggaaatattt tcactactca agaagtattt
1381 ctttggtggg gatcagactg aacggaccct caaaggcatt gaagcagcag tcatagatat
1441 ggaggttttg tcctctacat cagtaacaca actggtgaga gacaagcagg cagctaaagc
1501 ttatatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc
1561 tgacccccat gtgatatcct caacaaatgc cctaatatca cgcatagcta tggcacgatc
1621 cgctctggct aaggctcaag ctgagatgac cagccgaatg aggccagttg tcatcatgat
1681 gtgtggacct cctggaattg gaaaaactaa ggcagcggag cacttggcaa aacgcctggc
1741 taatgagatc aggcctggcg gcaaagtggg actggtgccg cgtgaggctg ttgaccactg
1801 ggatggctac catggtgagg aagtgatgct atgggatgac tatggcatga caaagataca
1861 agatgactgc aacaagctcc aggccattgc tgactctgcc ccactcactc tcaattgtga
1921 taggattgaa aacaagggga tgcagtttgt gtcagatgca atagtcatca ccaccaatgc
1981 cccagggcct gcccctgtgg acttcgtcaa cctcggcccc gtgtgcagac gggttgactt
2041 cctggtctac tgttctgccc cagaagtgga gcagataagg agagtcagcc ctggtgacac
2101 atcagcactt aaagactgct tcaaaccaga tttttcccat atgaagatgg agttggctcc
2161 tcaagggggg tttgacaacc aagggaacac accattcggc aagggtgtta tgaaaccaac
2221 aaccatcaat aggctcctca tacaagctgt ggctcttacc atggagagac aggatgagtt
2281 ccggctccag gggaagatgt atgattttga tgatgatagg gtgtcagcct tcaccaccat
2341 ggcacgcgat aatggattgg gtattctgag tatggcgagc ctgggtaaga agctgcgcgg
2401 tgttacatca atggagggct tgaagaatgc tttgaagggg tacaaaattg gtgcgtgcac
2461 aattaagtgg caggccaagg tatattcact ggaatcagat ggcaacagtg ttaacattag
2521 ggaggagaag aatgttttaa ctcaacaaca gcagtcggta tgcgctgcct ccattgcact
2581 cacccgcctg cgggccgcgc gtgcagtggc gtatgcgtca tgcatccaat cagccataac
2641 ctccatacta caaattgctg cctcagccct agtggtcaac agagccgtga aaagaatgtt
2701 tggcacacgc actgctgctt tgtccctaga gggtcccccc aaagaacaca agtgcagagt
2761 ccaccaggct aaggccgcag ggaaaggacc cattggccac gatgacgtgg ttgataaata
2821 tggactatgt gagactgagg aggacgaaga ggtagtccat actgagatgc catctgccac
2881 catagaaggc aagaataaag ggaagaacaa gaaagggcgc ggccgaaaga ataattacaa
2941 tgccttttcc cgtagagggc tcaatgatga agagtacgag gagtacaaga agatacggga
3001 agagaagggt ggaaattata gcattcagga atacctagaa gatagacaaa ggtatgaaga
3061 ggagcttgct gaggttcaag caggtggaga cggagggatc ggcgaaaccg aaatggaaat
3121 ccgccataga gtgttctata agtccaagag caagaagcac caccaggaag agcggcgcca
3181 actgggatta gtcacaggtt ctgacatccg gaaaaggaaa ccaattgact ggaccccccc
3241 taagtcagca tgggcagatg atgagcgtga agtggactac aatgagagaa tcaactttga
3301 ggcgcccccc actttgtgga gccgggtcac aaaatttgga tctgggtggg gcttttgggt
3361 tagtcccaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aagagttctt
3421 tggtgaaccc cttaccagca tagccattca cagggccgga gaattcaccc tcttcaggtt
3481 ttctaagaaa atcaggcccg atctcacggg catgatcctt gaggaaggct gtccagaggg
3541 tacggtgtgc tcagtgttaa taaaaaggga ctccggtgag ctattaccat tagctgtgag
3601 gatgggcgca atagcatcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat
3661 gttgctcacc ggggcgaatg ctaagggcat ggaccttgga actatcccag gggattgtgg
3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc atgctgctgc
3781 cactaaatca ggcaacacgg tagtgtgtgc cgttcaagct agtgaagggg aaaccacact
3841 agaggggggt gacaaaggtc actatgccgg gcatgagata atcaagcatg gatgtgggcc
3901 agccctatca accaaaacaa agttctggaa gtcgtcccct gaaccactac cccctggagt
3961 ctatgaacct gcatacctcg gtggccggga tccaagagtg agtggtggtc cctcgctcca
4021 acaggtgttg cgggaccagt taaagccatt tgctgagcca cgggggcgta tgccagaacc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac
4141 cccagtgcca tggagttaca gcgatgcatg tcaatcccta gataaaacta ctagctctgg
4201 tttcccccac cacaagaaga agaatgatga ttggaacggc actgccttca tcagggaatt
4261 gggagagcaa gcggcgcacg ccaataacat gtatgaacaa gctaagagca tgaagcccat
4321 gtacacggcg gcgcttaagg atgagttagt gaagccagaa aaagtgtacc aaaaagtgaa
4381 gaagcgcttg ctttgggggg cagatctagg aacagtgatc cgggccgcac gagcctttgg
4441 cccattctgt gatgccataa agtcccacac aattaaacta cctatcaaag ttgggatgaa
4501 ctcaatcgag gatgggccat taatttatgc agagcattca aaatataaat atcactttga
4561 tgcagactat acagcttggg actcaacaca aaataggcaa attatgactg agtcattctc
4621 aatcatgtgc cgattgactg cttctccaga attggcctca gtggtggcac aagatctgct
4681 tgcaccctca gagatggacg ttggtgacta cgtcataaga gtaaaggaag gccttccatc
4741 cggcttccca tgcacgtcac aggtcaatag cataaaccat tggttgataa ctttgtgtgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttattcag tccatgtcat acttttcctt
4861 ctatggtgat gatgaaattg tttccactga catagaattt gacccagcaa aattgacaca
4921 agtccttaag gagtatggcc tcaagcccac ccgccccgac aagagtgaag gtccaataat
4981 tgtgaggaag aatgtggatg gcctagtttt cttacgccgt accatttccc gcgatgctgc
5041 ggggttccaa gggcgactag accgagcgtc cattgaaagg cagatttatt ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aagtccagct
5161 gatatcactg ttaggtgagg cttcattaca tggtgaaaag ttctacagga agatctcaag
5221 caaagtcatc caagaggtta aaacaggggg ccttgaaatg tatgtgccag ggtggcaagc
5281 catgttccgc tggatgcggt tccatgatct tggcttgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcgacgg ctgggcaagt gaatatgatt gacccatgga
5521 tttttaataa ctttgtccag gcacctcaag gagaattcac tatttcccct aataataccc
5581 ccggtgatat tttgtttgat ttacaattgg gaccccacct taatccattt ttagcccatc
5641 tctcacagat gtataatggt tgggtcggca atatgcgtgt gcgcatactg ttggccggga
5701 atgcctttac agctggaaag ataatcattt gctgtgtccc ccctggcttt gatgctagaa
5761 tacttacaat agctcaagca accctcttcc cacacttaat tgctgatgtt aggacccttg
5821 agcctgtgga gcttcctttg gaggatgtgc gcaacgttct ctaccacaat agtagtcagc
5881 cgcagccaac aatgcggctg gttgctatgt tgtacactcc cctccgcact ggtggtggtt
5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtgct tacgtgcccc gcccccgatt
6001 ttagtttcct gtttcttgtt cctccctccg ttgaacaaaa gactagagtt ttcagtgtcc
6061 ccaatatacc cctgaaagat ctctcaaatt ctcgtgtccc cgtacccata cagggcatgt
6121 ttatgtcccc agatgttaat cagtcagtcc agtttcagaa tgggcgctgc cagattgatg
6181 gtcaactcca gggcaccacc ccagtctcgc tcagccaact ctgcaagatt aggggtaaaa
6241 cttctagtaa tgccagggtg ctcaacttaa gcgaggtaga tggcacacct tttatccccc
6301 ttgaatcacc agcgccagtt ggttttcccg acttaggagg ttgtgactgg catgtgaatt
6361 tcactttcca ggctcaaaac caggacccat cccaaagtgt gacctttgca actaatgatg
6421 ccagctttgt cccttaccta ggtagcattt cccctcataa tgggggagac tttcatgcag
6481 gcgacatcat aggtagcctt ggatggattt cagccccgtc tgacaattca caacttaatg
6541 tttggacaat accaaagtac ggatctagtc tcccagatgt cactcatctt gctcctgctg
6601 tgttcccccc aggctttggg gaagtgatcc tatacttcta ttctaccttc ccaggttctg
6661 gacaacctag tcaacttcaa gtcccatgtt tgttgcccca ggagttcatc acccacttct
6721 gtaatgaaca agctcccatc gctggggagg ctgctctcct ccactacgtg gaccctgata
6781 cgggccggaa cttgggggag ttcaaacttt accctgatgg atttatgacc tgtgtcccta
6841 atagtgttag cagtggccct caaaccctac ctatcaatgg agtctttgtc tttgtttcat
6901 gggtgtccag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gactgcggcg catataatgg ctcaagctgt catcggtgcc atagccgcgt ctgccgctgg
7021 tagcatacta ggggcaggca tacaggctgg tgctgaggct ggtcttcagg ctcaacggta
7081 ccagcaggat ctacagttgc agcaaaattc ttttaagcat gataaggaaa tgttaggcta
7141 tcaagttcag gctagtaatg ctcttttggc taagaatctt aacactagat atgctcttct
7201 gcaggcaggg ggcctgtcta gtgctgatgc tgctcgggca gtggctggtg ctcctgtcac
7261 tcgtatagtg gattggaatg gcacgcgcat tgcagcgccc gcctcaagtg ccaccacact
7321 cagatctggt ggttttatgg ccgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggacaatc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgaggtctgt ctctcccttt cacagtgatg ctctgagaac
7501 cgtttgggtc acaccacccg gttcatcatc aacttcatct gtgcagtcta gtttttatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaaaatt ttgtaatagg
7621 atgccagtgg gcaccatatt cagatttgat ttaattagat tgctttaatt aaatttggct
7681 taattggtgt t
//