Typing tool
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Typing tool
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Complete norovirus genomes
| LN854563 | GI.4 | |
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| GI.P4 |
ORF1: 5..5362
ORF2: 5346..6980
ORF3: 6980..7606
LOCUS LN854563 7697 bp RNA linear VRL 01-OCT-2015
DEFINITION Norovirus GI/Hu/NL/2011/GI.4/Groningen, complete genome.
ACCESSION LN854563
VERSION LN854563.1
KEYWORDS complete genome.
SOURCE Norovirus GI/Hu/NL/2011/GI.4/Groningen
ORGANISM Norovirus GI/Hu/NL/2011/GI.4/Groningen
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Bavelaar,H., Rahamat-Langendoen,J., Niesters,H.G.M., Zoll,J. and
Melchers,W.J.G.
TITLE Whole genome sequencing of faecal samples as a tool for the
diagnosis and genetic characterization of norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7697)
AUTHORS Zoll,J.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2015) Medical Microbiology, RADBOUDUMC, PO Box
9101, 6500 HB Nijmegen, NETHERLANDS
FEATURES Location/Qualifiers
source 1..7697
/organism="Norovirus GI/Hu/NL/2011/GI.4/Groningen"
/mol_type="genomic RNA"
/strain="GI/Hu/NL/2011/GI.4/Groningen"
/host="Homo sapiens"
/db_xref="taxon:1665644"
/note="genotype:GI.4"
gene 5..5362
/gene="POL"
CDS 5..5362
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="CRL46951.1"
/db_xref="UniProtKB/TrEMBL:A0A0G4PZE6"
/translation="MMMASKDVVAATAASAENTSDNSDSIKNRFFTRLKNLGSNNKPI
KIENTHMALNLISRGPSPIPQDKPPKDQRDKPPRNVAETQQAMGWIDPPMDQNLPTWE
ELSQTEKQEILKNNSNWFDAGGLAPASIPTGYVKNTEQQPPDHQVKWSASNGVDLGVG
NLTTVPGPAWNLCPMPPIDQRNNGPAKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVH
SPQAAFSIARITIHPIAAWWRVCYVPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFC
CRILNLQDSWLERRLVTSGRFNHPAQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSK
PFKDLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPD
MHLQGPEDLAKDLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA
VLKKYFFGGDQTEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKA
RKLSVRHADPHVVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTK
AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA
IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA
PDVEQTRRTNPGDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR
LLIQAVALTMERQDEFQMQGQVYDFDADRITAFTSLARANGLGLISMASLGKKLRGVD
SVHGLKNALSGYTITPCSIKWQARVYDIESDGTNVRIKENTSAQTQRQQSIDTAALAL
TRLKAARAAAYAACIQSAITTILQMAGSAIVINRAVKRMFGAHSSTIALEGPPREHRC
RAHLAKAAGGGPIGHDDVIDKYGLCETEEEDTSEEINVELPTATSEGKNKGKTKKGRG
RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG
IGETEMEIRHKIFYKSKKGRQNERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVD
YNEKLSFEAPPTLWSRVVRFGSGWGFWVSPTVFITTTHVIPSGAREFFGEPIESIAIH
RAGEFTQFRFSYKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK
IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT
VVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPA
YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPI
PWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMYELGKSMKPL
YTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVG
MNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVA
KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQS
QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLR
RTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH
GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG
V"
gene 5346..6980
/gene="VP1"
CDS 5346..6980
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="CRL46952.1"
/db_xref="UniProtKB/TrEMBL:A0A0G4PYH9"
/translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA
TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ
PLGTTPVSVSQLCKFRGRITSGQRVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE
MSKIPNSSTQNNPIVVNSVKPNSQQFVPHLSSITLDDIVSSGGDYIGTIQWTSPPSDS
GGANTNFWKIPDYGSSLSEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR"
gene 6980..7606
/gene="VP2"
CDS 6980..7606
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="CRL46953.1"
/db_xref="UniProtKB/TrEMBL:A0A0G4PYW3"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN
SFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGLSPSDAARAVAGAPVTRLVDWGG
VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPMQRTASWVQSQNSS
RNWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcagctact gctgctagtg ctgaaaacac
61 tagtgacaat agtgattcta taaagaaccg tttcttcaca aggttgaaga acttaggttc
121 taacaataag cccataaaaa ttgagaacac ccacatggcc cttaacttaa ttagtagggg
181 tccatctcca attccacaag ataaaccccc taaagaccag agggataaac ccccaaggaa
241 tgtggctgag acccagcagg caatgggatg gatcgacccc cccatggacc agaatctacc
301 aacctgggag gagttaagcc aaacagaaaa gcaagagata ctcaaaaaca attcaaattg
361 gtttgatgct ggtggtttgg caccagctag catccctact ggttatgtga agaatacaga
421 gcaacaaccc cctgaccacc aagtcaagtg gagtgccagt aatggggttg atcttggggt
481 aggcaattta acaactgtgc caggtccagc atggaatctg tgccccatgc caccaattga
541 ccaacgcaac aatggtccag caaaggaacc acttattggt gacatgatag aattctatga
601 ggggcacatt taccattatg caatatacat tggccaagga aaaactgttg gggttcactc
661 acctcaagcg gccttttcaa tagccaggat aactatacac cctatcgccg cttggtggag
721 ggtttgttat gtgccaacac ctgatcagag gttaaattat gaccaactca aagaacttga
781 gaatgagcca tggccatatg ctgcagttac taataattgc tatgagttct gctgcaggat
841 tctcaatctt caggactctt ggttggaacg tcgcttggtc acatctggcc gtttcaacca
901 cccagcacaa gactggtcca gggacacgcc tgacttccaa caagatagca agttagaaat
961 agtcagggat gccgtgcttg ctgctatcaa tggcttggta tcaaaacctt ttaaagacct
1021 cctaaacaaa cttaagccac tcaacgtgct caacctactc tctaactgtg attggacatt
1081 tatgggggtg gttgagacga taatactact tatggagctg tttgggatct tctggaatcc
1141 ccctgatgtg tccagcttta tagcctcatt attgcctgat atgcacttgc aaggaccaga
1201 agatctggct aaagacttaa taccgttggt attgggaggt gtggggcttg caattgggtt
1261 caccaaggac aaagttacaa aggtcatgaa gagtgctgtt gaaggactca gggcagccac
1321 acaattaggc cagtatggcc tagagatatt tgcagtttta aagaaatatt tctttggtgg
1381 agatcaaaca gagaagacct taaaagatat tgagacagcc gtaattgaca tggaggtcat
1441 ctcaacaact gctgttactc aactagtcag ggacaaacag gctgcccgga cctacatgaa
1501 catcttagat gctgaagaag agaaggcaag aaagctttca gttagacatg cagaccccca
1561 tgttgtatcc acgaccaatg ccctgatctc acgtatttca ttggctcgct ccgcacttgc
1621 taaggcacaa gctgagatga ctaatagggt caaaccagta gtgataatga tgtgtggtcc
1681 cccaggtata ggcaagacaa aggcagccga gtaccttgct aagagactgg ccaacgagat
1741 acggcctgga ggaaaagtgg gcctcgtgcc aagggaggct gtggatcatt gggatggata
1801 tcacggtgaa gaggttatgc tatgggatga ctatggtatg tctaagatag ctgatgactg
1861 taataaatta caggctatag ccgacacagc tccactcact ttgaattgtg accggattga
1921 gaagaaaggg ttacaatttg tctctgatgc catagtgata acaacaaatg ccccaggacc
1981 agccccagtc gactttgtca atcttggccc agtgtgtcgg cgggtggatt tcttggttta
2041 ttgcactgca cccgacgttg aacaaacacg tcgcactaac cctggagaca ccggagccct
2101 taaggattgc tttaaaagtg acttctctca tctaaaaatg gagttggctc cacagggcgg
2161 attcgacaat caaggaaaca ctccatttgg caaagggacc atgcggccta ccacattaaa
2221 ccgcctcctt atacaggccg tagcactaac catggagcgt caggatgagt tccagatgca
2281 aggtcaagtg tacgattttg atgctgacag gatcactgcc tttaccagtt tagcaagagc
2341 caatggtttg ggtctcatta gcatggcctc tctaggaaag aaattaaggg gtgtggactc
2401 ggttcatggc ctcaagaatg cactatcagg ctataccata accccctgta gcataaagtg
2461 gcaagctaga gtgtatgaca ttgaatcaga tggtaccaat gtacgcataa aggaaaacac
2521 ctcagcccag acacaacgcc agcaatcaat tgacacagca gccctagcac ttaccagact
2581 taaagcagca cgggcagcag catatgcagc ttgcatacaa agcgcaataa caactatcct
2641 gcagatggct gggtcagcca tcgttataaa tcgtgctgtt aaaaggatgt tcggtgcaca
2701 ctcgagcact atagctcttg aaggaccccc aagagaacat cggtgcaggg ctcacttagc
2761 caaggctgca ggtggtggac caataggcca tgatgatgtc attgataagt atggcctatg
2821 tgagactgaa gaagaggaca ccagtgagga gataaatgtg gagctaccca ccgccacttc
2881 cgaaggtaaa aataaaggaa agaccaagaa aggaaggggc agaagggcca actacaatgc
2941 tttttcacgg cgcggcctga gtgatgagga gtatgaggag tataagaaga tcagggaaga
3001 aaagaatggc aactacagca ttcaggagta ccttgaagac aggcaacgct atgaagaaga
3061 gctcgcagaa gtgcaagctg gtggtgatgg aggcattggt gagacagaaa tggagatccg
3121 acataaaatc ttttacaagt ccaaaaaggg ccgccagaat gaacgccgcc aattagggct
3181 agtcactggt agtgatatca gaaagagaaa accgattgat tggacccccc ccaaaaacga
3241 ttgggcagat gataataggg aagtggacta caatgaaaaa ctcagttttg aagccccacc
3301 aaccctctgg agccgggttg tgagatttgg ctctgggtgg ggcttttggg tgagcccgac
3361 tgtttttatc accaccactc atgtcatacc atctggggcg cgtgaattct ttggggaacc
3421 catcgagtcc attgcaatcc atcgtgctgg tgaattcaca caattcagat tttcatacaa
3481 ggtccgcccg gatctgactg gaatggtgct ggaggaaggc tgtcctgagg gtgtcgtgtg
3541 ttctattctc attaaacgtg actctggtga gctgctaccc cttgctgtcc gaatgggcgc
3601 tatagcgtcc atgaagattc agggaaggct agtacatggt cagtctggga tgctgcttac
3661 tggagctaat gctaagggga tggatttagg taccctacca ggtgattgtg gtgcccctta
3721 tgtgtacaaa aggaacaacg actgggtggt ttgtggtgta catgcagccg ctacaaagtc
3781 aggcaacact gtggtgtgtg ctgtccaggc tggagagggt gaaaccaccc tagagggtgg
3841 tgacaaaggc cactatgcag gtcatgaaat aatcaaacat agtaagggcc cagctctatc
3901 tactaaaacc aagttttgga gatcaacccc tgaaccattg ccgccaggtg tttatgaacc
3961 agcatacctt gggggtcgtg atccaagggt aaaaggcggg ccctctctgc agcaggtctt
4021 gcgtgatcag ctgaaaccat ttgctgagcc gcgaggtcga atgccagagc ctggtctact
4081 tgaggcagct gttgaaactg tcacgtctat gcttgaacaa acaatggata caccaatccc
4141 ctggtctttc tctgatgcat gtcaatcact tgacaaaacc acaagttcgg gacacccata
4201 tcataaaagg aagaatgatg attggaatgg aacttcattt gttggagagc ttggagaaca
4261 ggcagcacat gccaacaaca tgtacgaatt aggcaaatct atgaaaccat tatacactgc
4321 agccctaaaa gacgagttag tcaagcccga gaaagtttat caaaagatca agaagaggct
4381 tctctggggt gctgatctct caacagttat aagggctgcc agggcctttg gaccattttg
4441 tgatgctata aagccccatg tcattaaact ccccattaaa gtcggtatga actccataga
4501 ggatggccca atgatttatg cagaacatgc aaaatataag aatcattttg atgcagatta
4561 ttcggcctgg gattccacgc aaaatagaca gattatgact gaatcctttg caatcatgtg
4621 ccgcctcaca gcatcaccgg aattggcttc tgttgtagct aaagatctac tagcgccttc
4681 agaaatggat gttggtgatt acatcatccg tgtaaaagaa ggcttgccat caggattccc
4741 ttgcacatca caggtgaaca gtataaacca ctggctgatc acactgtgtg ctatgtctga
4801 agtcacgggt ttgtcacctg atgtcataca atcccaatct tacttttctt tctatggtga
4861 tgatgagata gtctcaacag acattgattt tgaccccgct cgcctcaccc aagtgcttaa
4921 ggaatatggg ttgagaccca ccagaccaga caagtcagaa gggcccatca tactcagaag
4981 acaggtggat ggtcttgttt tcttaaggag gacaatttcc aaagatgctg caggctttca
5041 gggaaggcta gataggggct caattgaaag gcaactgtgg tggactcggg gccctaacca
5101 tgatgatccc agtgaaactc tgattccaca cccccagagg aaagttcagc ttatatccct
5161 tcttggtgag gcttccctcc atggtgagaa gttttacagg aaaatctcca gtaaagtcat
5221 acaggagata aagactggtg gcttagaaat gtatgtgcca ggttggcagg ccatgttccg
5281 ctggatgcgc ttccatgatc tcggattgtg gacaggagat cgcaatctcc tgcccgaatt
5341 cgtaaatgat gatggcgtct aaggacgcta caccaagcgc agatggcgcc actggcgccg
5401 gccagctggt accggaggtt aatacagctg accctatacc cattgaccct gtggctggct
5461 cctctacagc ccttgccact gcgggtcaag ttaatttgat tgatccctgg ataatcaata
5521 attttgtgca agcccctcag ggcgagttca caatatcccc aaataatacc cccggtgatg
5581 tgctatttga tttgcagtta gggcctcatc tgaatccttt tctttcccat ctttctcaga
5641 tgtacaatgg ctgggtgggc aacatgcgag tacgtgttgt tttggctggt aatgctttta
5701 cggctgggaa ggttataatt tgttgtgttc cccctggctt tcaatctcgc accctttcca
5761 tagctcaggc tactctattt ccccatgtta ttgctgatgt taggactctt gatcctgtag
5821 aagtgcccct tgaagatgtt aggaatgtgt tgtatcataa taatgatacc caacctacca
5881 tgcgcctcct ttgcatgttg tacacccctc ttcgaactgg gggggcgtct ggtgggactg
5941 attcttttgt ggtggctggg cgtgtgctta cttgcccagg ccctgacttt aacttcttat
6001 tcctagttcc tcctacagtc gagcaaaaga ctcgcccttt tactgtgcct aatattcctt
6061 tgaagtatct gtctaattct aggatcccaa accctattga gggtatgtct ttgtcacctg
6121 accagaccca aaatgttcaa ttccagaatg gtaggtgtac aattgacggt cagcccctcg
6181 ggaccacacc tgtctcagtt agccagttat gtaagtttag gggtaggatt acatctggac
6241 agagggtgct caatctgaca gagttagacg gttcaccttt tatggccttt gccgcccccg
6301 cccccgcggg ctttccagat ctcgggtctt gtgattggca tattgaaatg agtaaaattc
6361 caaactccag cacccagaat aatccaatag tagttaattc tgtcaaaccc aatagtcaac
6421 agtttgtccc gcatttgtca agtatcaccc ttgatgatat tgtttctagt gggggtgact
6481 atattggcac tatacaatgg acctctcctc cttctgattc cggcggagcc aacacaaatt
6541 tttggaagat tcctgactat gggtctagcc tatcagaagc ctcacagctg gcccccgctg
6601 tctatccacc tggcttcaat gaggtgattg tgtactttat ggcatctata cctggtccca
6661 atcaatctgg ttcccccaat ttggtgccat gccttctccc ccaggaatat ataacacatt
6721 ttatcagtga gcaggccccc attcagggtg aggctgcctt actccattat gtagacccag
6781 acaccaatcg taatttgggt gagttcaagt tgtatcctgg tggttatctg acttgtgttc
6841 ctaatagttc tagtactgga cctcaacagc ttcctcttga tggtgtgttt gtctttgctt
6901 cttgggtttc tagattttat caattaaagc ctgtgggaac agccggaccg gctagaggta
6961 ggcttggtgt ccgcagataa tggcccaagc cattatagga gccattgctg cctccgcggc
7021 tggcagtgcc ctgggtgctg gcattcaggc tggtgctgaa gctgcattac aggcacagag
7081 atatcaacaa gatttaactt tacagcagaa ttctttcaat catgataaag aaatgttagg
7141 ttatcaggta gaaatgtcca ataagctatt agctaaaaat cttaataccc gctattctct
7201 tctccaggcg ggtggtctct ccccctctga tgcggctagg gctgtggccg gggcccctgt
7261 cactaggttg gttgactggg gtggagttcg tgttgcagca ccccaatcat ctgccaccac
7321 actgagatct ggcaatttta tggcagtgcc actcccagcc cagccaaagc agaaacctct
7381 tgctagtgag ggatattcca atccagctta tgaccctatg cagcgcacag cttcttgggt
7441 tcaatcccaa aattccagcc ggaattggtc cccataccat aggcaagccc tccaaactgt
7501 gtgggtgacc ccccctggtt ctacttcttc ttcttctgtt tctactgccc ctcgagggta
7561 ttttaataca gatagattgc ctctgttcgc aaacttgagg cgctaatgtt gtaataagat
7621 tagtgagcat cctattcaat ttttggcttc atataatttg attgtatttg gcttttaatt
7681 ttgatttggt tgatgtt
//