Typing tool
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Typing tool
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Complete norovirus genomes
| LC790071 | GII.12 | |
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| GII.P16 |
ORF1: 1..3536
ORF2: 3517..5124
ORF3: 5124..5903
LOCUS LC790071 5913 bp RNA linear VRL 13-DEC-2023
DEFINITION Norovirus GII.12 GII/Hu/JP/2023/GII.12[P16]/TKY230968 POL, VP1, VP2
genes, partial and complete cds.
ACCESSION LC790071
VERSION LC790071.1
KEYWORDS .
SOURCE Norovirus GII.12
ORGANISM Norovirus GII.12
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5913)
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2023) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
FEATURES Location/Qualifiers
source 1..5913
/organism="Norovirus GII.12"
/mol_type="genomic RNA"
/isolate="GII/Hu/JP/2023/GII.12[P16]/TKY230968"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:684605"
/country="Japan"
/collection_date="2023-10"
gene <1..3536
/gene="POL"
CDS <1..3536
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEV21227.1"
/translation="RVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRIAAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHSRIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSESETKEE
ALRPEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDIGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 3517..5124
/gene="VP1"
CDS 3517..5124
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BEV21228.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNSFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPVLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATDSTKFTPKLGAVQIGTWEQDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 5124..5903
/gene="VP2"
CDS 5124..5903
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BEV21229.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAINAPMTQVLDWNG
TRHWAPGATKTTAFSGGFTSASHARTVDLTKKTSATPAPAPVSRPSSIASTVSTRSTL
ISGSSNSPSLARSSSSFSSQPTSSSSRTSEWVRSQNRALEPYMSGALRTAYVTPPSSR
TSSNGTVSTVPKEVLDSWSSAFNTHRQPLFAHLRRRGESQA"
ORIGIN
1 agagagtcgg actcatacca agaaacggtg tggaccactg ggatgcatac aaaggcgaga
61 gagtcgtgct gtgggacgat tatggcatga gtaatcccat ccatgatgct cttcgcatac
121 aagaattggc tgatacgtgt cccctcacct taaattgtga cagaattgaa aacaaaggaa
181 aagtttttga cagtgaagtc ataataatca caacaaacct tgccaacccg gccccacttg
241 attatgtcaa ctttgaggct tgttccagga gaattgactt cctggtgtac gctgaggcac
301 cagaagtaga gaaggcaaag cgggacttcc ctggtcagcc agatatgtgg aaggatgcct
361 tcaagccgga cttttcacac atcaagctgc aacttgcacc tcagggcggc tttgacaaga
421 atggcaacac cccgcatggg aaaggagtga tgaagaccct cactaccggc tctctgatcg
481 ctcgtgcatc aggcctactg catgagagga tggatgaatt tgaactccaa ggccccacaa
541 tcaccacctt caatttcgac cggaacagaa tcgcagcatt cagacaactg gctgcagaaa
601 acaagtatgg attagtggac accatgaaag ttggcaatca attaaaagga gtgaaaacca
661 tggaagaact taaacaagca attaggaatg tgaccatcaa gaggtgccgg atcatttacg
721 gtggctccac atatgacctt gaatctgacg gcaagggcaa agttttggtg gaaaaggtca
781 aaaacacctc tgtacagacc aacaacgagt tggctggagc cttacaccat ctcaaacact
841 cccgaatcag gtactatgtc aaatgcgtgc aagaagcagt ctattccatc atacaaattg
901 ccggcgctgc gtttgtcacc acgcgcattg cacgccgcat gaacatacaa gaactctggt
961 cgaagccaca attagaccaa agtgaatcag agactaagga agaggccctc aggccagaag
1021 acgacgagtt cgtcatatct tctaaggaca tcaaggagga aggaaagaag ggtaaaaata
1081 aaactggccg tggcaagaaa cacaccgcat tctccagcaa gggcttgagt gatgaggagt
1141 atgacgagta taagaggata agagaagaga gaaatgggaa gtactctata gaggagtatc
1201 ttcaagacag agacaggtac tatgaggagc tcgccattgc caaggccacg gaagaagact
1261 tctgtgaaga ggaggagatc aaaatccgtc agagaatttt ccgtcccact aggaaacaaa
1321 gaaaggaaga gagggccaca ttagggctag taacgggttc agaaatcaga aagagaaacc
1381 ctgatgactt caaacccaaa gggaagctgt gggccgatga caacagaagt gttgactaca
1441 atgaaaaact ggactttgag gcccccccaa gcatatggtc taggatcgtg agctttggtt
1501 ctggctgggg cttctgggta tcaccaagcc tgttcataac atcaactcat gtgatccccg
1561 caggcataac agaagcattt ggagtcccca tcaaacaaat tcagatccac aaatcaggtg
1621 aattttgccg gttcagattc ccaaaaccaa ttagaccaga tgttacagga atgatcttgg
1681 aagaaggcgc gcctgagggt accgtggcaa ctgtgctcat caaacgcccc accggagagc
1741 tcatgcctct tgcagccaga atgggaacac acgcaaccat gaaaattcaa ggccgcatgg
1801 ttggcgggca gatgggtatg ttgctcactg gatcaaatgc caaaggaatg gatttgggaa
1861 caactcctgg tgactgtggc tgcccctaca tctataagag aggcaacgac tatatagtca
1921 ttggggtgca cactgcagca gcccgtggtg ggaacaccgt catctgtgcc acacagggaa
1981 gtgagggtga ggcaactctt gagggtggag atgacaaagg aacatactgt ggagcaccca
2041 ttctgggccc tgggggcgca ccaaaattga gcaccaaaac taaattttgg aggtcatcga
2101 acacgcccct tccaccaggg acgtatgagc ctgcctacct cggcggccgt gatccgcgtg
2161 tcaagggtgg gccctccttg cagcaggtaa tgagagatca gttgaagcca ttcactgagc
2221 ccaggggcaa acctccaaga ccaagtgtat tggaagcagc taaacaaacc atcatcaatg
2281 tcctcgaaca aaccctggat cctccacaaa aatggacata cgcacaggcg tgtgcctcac
2341 ttgacaaaac cacctctagc gggaaccccc atcacgtccg aaagaatgaa ttctggaatg
2401 gtgagacctt cactggaaaa ttggcagacc aagcatcaaa agcaaaccta atgtttgagg
2461 aagggaaaca tatgacacca gtgtatacag cagcactcaa ggacgagcta gttaagactg
2521 agaaaatcta tggaaagatc aagaagaggc tgctctgggg ctctgacctg tccaccatga
2581 tccggtgtgc taggtcattt ggtgggctca tggacgagat gaaggcacac tgcatatcac
2641 tcccagtccg agttggcatg aatatgaatg aagatggccc aataatattt gagaaacatt
2701 ccagatataa gtaccactat gatgcagact actcccgttg ggattcaaca caacagaggg
2761 cagtgctggc agcagccttg gaaatcatgg tcagattctc tgcagaacca caattggcac
2821 aaatagtcgc tgaggatctg ctggccccta gtgtagtaga tataggagac tttaaaatca
2881 caataaatga agggctcccc tctggtgttc catgcacttc tcaatggaac tccattgcac
2941 actggctact aactctctgt gccttgtctg aagtcaccaa actgtcccct gacattatac
3001 aagcaaattc catgttctca ttttacggtg atgacgagat cgtcagcacc gacataaaat
3061 tagaccctga acagttaacc gccaaattga aggagtacgg cctgaaacca acccgcccag
3121 acaaaaccga gggacccctg atcatcagtg aagatttgga cggactcact ttcctccgaa
3181 ggacggtgac tcgtgaccca gctggctggt ttggtaaact ggaccagagc tccattttga
3241 ggcagatgta ctggactaga gggccaaatc atgaagaccc caatgaaaca atgatacccc
3301 attctcagag acccatacag ctcatggcat tgcttggtga agcctctctt catggaccct
3361 ctttctatag taaaatcagc aaattggtca taactgaact caaggaaggt gggatggatt
3421 tttacgtgcc aagacaggaa cccatgttca ggtggatgag gttttctgac ttgagcacgt
3481 gggagggcga tcgcaatctg gctcccaatt ttgtgaatga agatggcgtc gaatgacgcc
3541 gctccatcta atgatggtgc agccggtctc gtaccagagg tcaacaatga gaccatggca
3601 cttgaaccgg tggctggggc ttcgatagcc gccccactca ccggccaaaa caatgttata
3661 gacccctgga ttagattaaa ttttgtgcag gcccctaatg gagagtttac agtctcaccc
3721 cgcaactcgc ccggggaagt cctacttaat ttggaattag gtcccgaact gaatccatat
3781 ttggcacacc tttctagaat gtataatggt tatgcaggtg gagttgaggt gcaagtgcta
3841 ctggctggga acgcgttcac ggctggaaaa ttggtatttg ctgcagtccc cccccatttt
3901 ccattagaga atataagccc tggtcaaata accatgttcc ctcatgtaat tattgatgtt
3961 aggactttgg agccagttct attacctcta ccagatgtca gaaatagctt cttccattac
4021 aaccagcaaa atgagccgag gatgaggctt gttgcaatgc tttatacccc tcttagatct
4081 aatggttctg gtgatgatgt gttcaccgtc tcttgtaggg tgctcactcg accctctcct
4141 gattttgatt ttaattattt ggtgccccca acagttgaat ctaaaacaaa accattcacg
4201 ctccctgtct tgaccattgg ggagttaacc aactccaggt tccctgtgcc catagatgaa
4261 ctctatacta gtcccaatga gagtttggtg gttcaacccc agaacgggag gtgcgcgctg
4321 gatggggagt tgcagggcac tacccagctc cttcccacgg cgatttgctc gttcaggggt
4381 cggatcaatc agaaagtgag tggagagaat catgtttgga acatgcaagt caccaacatc
4441 aacggaaccc cttttgatcc aacagaggat gttccagccc ctctgggcac gccagacttt
4501 tctggcaagc tctttggcgt tctaagccag agggaccatg ataatgcctg caggagtcat
4561 gatgcagtga ttgcaactga ttctaccaaa tttaccccaa aattgggtgc tgtacaaatt
4621 ggcacatggg aacaagatga tgtgcacatt aaccaaccta ctaagttcac tccagttgga
4681 ttgtttgaga atgaaggttt taatcagtgg acacttccta attattctgg agctttaaca
4741 ctcaatatgg ggttggcccc ccctgtggcc cccacattcc ctggtgagca aatcctcttc
4801 ttcaggtccc acattcccct taaaggaggt gttgcagacc cagttattga ctgtcttcta
4861 ccccaagagt ggatccaaca cctttaccag gagtcagccc cttcacaaac agatgtggca
4921 ctgattagat ttacaaatcc agacacaggg cgtgtcctgt ttgaggcaaa gttgcacagg
4981 agtggctaca taacagtggc caatactggt agcagaccaa ttgtggtgcc agctaatggt
5041 tatttcagat ttgactcttg ggttaatcag ttttactctc ttgcccccat gggaactggg
5101 aatgggcgca gaaggatgca gtaatggctg gagctttcat agcagggctt gctggtgaca
5161 tagtcaccaa tagcattggc tcactcgtga acgctggggc caatgcaata aatcagaaag
5221 tagactttga aaacaacaag caactacaac aggcatcttt caaccatgac aaagaaatgt
5281 tgcaagctca aattcaggcc accaaacagc tacaggctga tatgattgca atcagacagg
5341 gggtgttgac cgcgggcggc ttctccccta ctgacgcagc aagaggtgca atcaacgcgc
5401 ccatgactca ggtcttggat tggaatggga ccagacattg ggcccccgga gccacgaaaa
5461 caactgcttt ctccggtggg tttaccagtg cctctcatgc caggaccgtt gacctgacca
5521 agaagacatc agccacgcca gcccccgcgc ctgtctctag gcctagttct attgcttcta
5581 ctgtttctac ccgctccact ttgattagcg ggtcttctaa ttctccttct ttagctagga
5641 gctcttctag tttttcttcc caacccactt cctcatcctc ccgaactagt gagtgggtgc
5701 gcagtcaaaa tagagcgctg gagccttata tgagtggggc gctacgtaca gcctacgtga
5761 cgcctccatc cagtaggact tctagcaatg gcacagtctc aaccgtgcca aaagaggttt
5821 tggactcctg gtcgtctgca tttaatacac acagacagcc gctgtttgct catctccgtc
5881 ggagagggga gtcacaagct tagtgaaaag atg
//