Typing tool
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Typing tool
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Complete norovirus genomes
| LC790056 | GII.6 | |
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| GII.P7 |
ORF1: 1..5081
ORF2: 5062..6705
ORF3: 6705..7481
LOCUS LC790056 7511 bp RNA linear VRL 13-DEC-2023
DEFINITION Norovirus GII.6 GII/Hu/JP/2022/GII.6[P7]/TKY220914 RNA, nearly
complete genome.
ACCESSION LC790056
VERSION LC790056.1
KEYWORDS .
SOURCE Norovirus GII.6
ORGANISM Norovirus GII.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7511)
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2023) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
FEATURES Location/Qualifiers
source 1..7511
/organism="Norovirus GII.6"
/mol_type="genomic RNA"
/isolate="GII/Hu/JP/2022/GII.6[P7]/TKY220914"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:499193"
/country="Japan"
/collection_date="2022-11"
gene <1..5081
/gene="POL"
CDS <1..5081
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEV21182.1"
/translation="NDATTAFGSQNSVNDSNNTAPSSKEEAGAFSNIKVGFKKMLGAV
PKGTKAPSSDQHCPSVKIGAKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEH
ENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISL
ATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTW
LSRKSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKL
KPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQGPEDL
AVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPK
KEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARRLSTK
SSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLA
KSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCP
VTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKV
KRDFPGQPDMWKDHFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVA
GLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLE
DLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQ
ARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVAQG
RWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEY
LQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRK
RRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTT
HVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILV
KRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIY
KRGNDIVVAGVHTAAARGGNTVICATQGLDGEAVLEGNENHGTYCGAPILGPGKAPKL
STKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFSEPRGKPPRP
AVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTG
PLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCA
RAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSI
LSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIA
HWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPT
RPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYE
SMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMR
FSDLSTWEGDRNLAPEGVNEDGVE"
gene 5062..6705
/gene="VP1"
CDS 5062..6705
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BEV21183.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRVQ"
gene 6705..7481
/gene="VP2"
CDS 6705..7481
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BEV21184.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLTRSESPKIKVNSDSASVYSSATTTPSQST
HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 ctaacgacgc taccactgcc tttggcagcc aaaactctgt caatgacagt aacaacaccg
61 ccccttctag taaagaagag gctggtgcgt tctccaacat caaagttggt tttaagaaaa
121 tgctgggtgc cgttcccaag gggaccaaag cacccagcag tgatcagcat tgcccctcag
181 ttaagatcgg ggccaagaca ttaacagttc cccctgagcc cccaaacggt gaagacaccg
241 tgcagtttga tgcgaagtca gaaactgtgc gcgggctacc agacttgaca acggtgcaga
301 atgaacatga aaacacacca tacactgtcc cccctttgag tgaaagggag cacagaccag
361 ccactgaacc gcttcctggc acaatactcg agatgtggga tggtgaattc taccattact
421 ctgtgtacgt cagcggtggc aaagccctag gggtccacaa gccccctgca gcgataagcc
481 tcgcgacgat agagctcaca cccatatctc tctattggag gcccgtttac acccccaact
541 atctggtctg tccagacacg ttgaagggcc ttgctggtga gaagttcccc tatacggcct
601 tcagcaacaa ctgttacaac ttctgttgct gggtgcttga gctcaatgac acgtggctta
661 gcaggaaaag catctctagg accaccggct tcttcaaacc ttaccagtct tggaatagga
721 aaccccttcc aaccgttgat gatggaaaga tcaaaaaggt ggccaacgca attctttgcg
781 cgcttggatc actgttttca aaaccaatta aggacctatt gggcaaactt aaaccattga
841 acttgctaca cttgctcgca tcatgtgact ggacgtttgc aggtatagta gagacagtca
901 tcctaatggc ggaacttttc aacatcttct ggacaccgcc agatgtttcc agcttcatag
961 cctctctgat aggtgatttt gaactgcaag gacctgaaga ccttgctgtg gagcttgtcc
1021 ccgtggtcat gggtggcata ggaatggttc tcggcttcac tgctgagaag ataggccgca
1081 tgctatcgtc cgctgcatca acactacggg catgcaaaga cttggggaat tatgctcttg
1141 acatactgaa actggttatg aagtggttct tcccaaagaa agaagagaaa gccgagatgg
1201 aaaccctaag ggcgattgag gatgccgtcc tggacatgga agctatagga aataaccacc
1261 tcacaaccct cctcaaggac aaggatagcc tcacggcttt catgaagact ctagacctag
1321 aagaggagaa ggcaaggagg ctgtccacca aatcatcctc gccagacatc gtcggcacta
1381 ttaatgccat actggccaga atagctgctg ccaggtccct cttacacaag gctaaagaag
1441 aaatgtttag caggatcaga cccgtggttg tcatgatctc gggtagacct ggtattggca
1501 agacccacat ggcaagacat ttggctaaaa gtatcgccaa caccatgagc ggcgaccaga
1561 gggtgggact cgtcccacgc aacggggttg atcattggga cgcctacagg ggagagaggg
1621 tggtcctgtg ggatgattat ggcatgggaa atcctgttaa agatgcccta acactgcaag
1681 agttggccga cacctgccca gtgactctaa actgtgatag gattgagaac aaagggaaga
1741 tgtttgacag tgatgtcatc ataattacga ccaatttagt caacccagcg cccctcgatt
1801 acgtaaactt cgaggcgtgc tccagaaggg tcgacttcct ggtctatgca gaatcaccag
1861 aaatcgagaa ggttaagaga gacttccccg gccaacctga catgtggaag gaccatttta
1921 agcaagactt ttcccacata aagctgactc tagccccaca gggtggattt gacaagaacg
1981 gcaacactcc gcatggtaag ggcaccatgc gatctctaac ccaggggtcc ctgactgcaa
2041 gggttgcagg ccttgttcat gagaggagag acgagttcca gctccagggg aacgaccttc
2101 aaacatacaa ctttgacacc aacagggtct ctgcgtttag gaagctggcc gcagacaaca
2161 agtacgggat tatggagact atgagagtgg gtacagcgct taagagtgtc aagaccttag
2221 aagacctgaa agttgcactg agggatgtga agttcaatga gtgtgagata atttacagaa
2281 actccaaata ccgagtctct tccaatggta aaggttctgt ctctgttgac aaagttgagg
2341 accaaacatc ccagactgca aacgaagtgg gcgcagcact cctcagactc aggcaggcaa
2401 gagccagata ctatgtcagc tgcttccaag atctcgttta cactctaata caggtcgccg
2461 gagcatcatt cgttgtcaac aggatctcca agaggttctg ctgggagaga tgggtcaaac
2521 caaccgagac ccaggaaacg agtgaatctg aaaaggaggt ggcccaaggc agatgggaga
2581 ttgagccaaa ggacacagaa ccagaaggta agaagggtaa gaacaagaaa ggaagaggca
2641 agaaacacac agctttctcc agtaaaggcc tgagtgatga ggagtatgac gagttcaaga
2701 gaattagaga agaaaggaac ggaaaatact ccattgaaga atacctgcaa gaccgggacc
2761 gctactatga ggaagtggca gttgcccggg cgacagagga ggacttctgt gaagaggagg
2821 aggccaagat aagacaaaga atctttcgcc ccacaaagaa acagaggaag gaagaaaggg
2881 gggtgcttgg tttggtcact ggctcagaca tcaggaagag aaggccagac gatttccaac
2941 cgaagggcaa cctgtgggca gacgacacca ggagtgtgga ctacaacgag agacttgatt
3001 ttgaggctcc cccgagtgtc tggtcaagaa tagtcccact gggcactggc tggggcttct
3061 gggtctcatc aaaccttctg atcacaacaa cgcacgtcct acctaagggg attaatgaac
3121 tctttggagt tgagatcaaa cagattcaaa ttcataagtc cggagagttc tgcaggttca
3181 gattcccgag accaattaga ccagatgtca cagggctcgt gttggaggaa ggcgctccag
3241 aaggcactgt ctgctccata ctcgtaaaga gacctacagg tgagatgatc cccctggcag
3301 tgaggatggg cacacatgca tccatgaaga tacagggtag gaccgttggt ggccagatgg
3361 gaatgctcct cacaggggca aatgcaaaga acatggacct cggcactggt cctggtgact
3421 gcggttgccc ttacatctac aaacgtggca atgatatagt tgtcgcgggt gtccacaccg
3481 cagcagcccg gggaggcaac actgtcatct gtgccactca agggctagat ggggaagcgg
3541 tccttgaggg aaatgaaaac catggcactt actgcggtgc cccaatcttg ggtccaggca
3601 aggcgcccaa acttagtacg aagaccaagt tctggcgctc atcaccagat gctttgccgc
3661 caggcactta tgagcctgcc tacttgggag gcaaggaccc tagagtggag aaaggaccat
3721 ccctgcagca agtcatgagg gaccagctaa aacctttctc agaacccagg ggcaagccac
3781 ccagacctgc agttttagaa gaagccaaaa agacagtaat gaatgtttta gagcaaacca
3841 ttgaccctgc taagccgtgg acctattccc aagcatgtgc ctcactggac aagaccacct
3901 ccagtggtag cccccatcat gtcaggaaaa atgaccattg gaatggggaa tccttcactg
3961 gccccctcgc agaccaagca tccaaagcca acctcatgta tgagcaggcc aaacatgtgc
4021 agcccgtgta cacggccgca cttaaagatg agttagtcaa aactgacaag atctacaaga
4081 agataaagaa aaggctctta tgggggtcgg atcttggtac aatgatcagg tgtgccaggg
4141 cctttggcgg tctcatggat agcatgaagg caagctgcat agcccttcca tgcagggtag
4201 gaatgaacat gaatgaggat ggacccatca tatttgacaa acattctaag tataggtatc
4261 actatgatgc tgactattcc aggtgggact caacccaaca aaggagcatt ctctcggccg
4321 ctatggaagt gatggtgcgg ttctctgctg aaccagagct ggcacaagtg gttgcagagg
4381 atctcctggc acccagccaa ttagatgttg gcgatttcgt catctcagtc caggagggtc
4441 tgccatcagg ggtcccatgc acatcacaat ggaattcaat agcacattgg atcctaactt
4501 tgagtgcaat ggcagaagtg tcgggtcttt caccagatgt tgttcaagcc cactcctgtt
4561 tctcattcta cggtgatgat gagatcgtca gcactgacat caaccttgat cccatgaagt
4621 tgacacaaaa actcagagag tatggcctgg tccccactcg acctgacaaa actgagggtc
4681 cccttgtaat aactgaagac ctcaccggcc taacgttcct gcgcaggtcg attgcacggg
4741 acccagctgg gtggtttgga aagttggacc aagactcaat cctcagacag ttgtactgga
4801 caaggggccc caaccatgag aacccatatg agagcatggt ccctcactcc cagcgggcca
4861 cacaactcat ggcccttctc ggtgaggctt cactgcatgg cccccagttt tacaagaagg
4921 ttagcaagat ggtcatcaat gagatcaaaa gtggtggtct ggaattctat gtgcccagac
4981 aagaggccat gtttagatgg atgagattct ctgacctcag cacatgggag ggcgatcgca
5041 atcttgctcc cgagggtgtg aatgaagatg gcgtcgaatg acgctgctcc atcgaatgat
5101 ggcgctgcca acctcgtacc agaggccacc aatgaggtta tggcacttga gccggtggtg
5161 ggagcctcaa ttgctgctcc tgtcgtcggc caacaaaata taattgaccc ctggattaga
5221 gaaaattttg ttcaggcacc acagggtgag tttactgttt caccaaggaa ctcacctggt
5281 gagatgcttc taaatcttga attaggccct gagctcaacc cttatctgag tcacttgtcc
5341 cgcatgtata acggctatgc tggtggtatg caggttcagg tggtcctagc tgggaatgcg
5401 ttcacagctg gtaaaatcat ctttgccgcc gtcccaccac atttccctgt tgataacatt
5461 agtgcagccc aaattacaat gtgcccccat gtaattgttg atgtaagaca gcttgagcca
5521 gttcttttgc ccctccctga cataaggaat agattctttc attacaatca ggaaaacacc
5581 ccccggatga gacttgtggc tatgttgtac acacccctta gagcaaattc tggtgaggat
5641 gtattcacgg tgtcttgcag agttctgacc cgccctgccc ccgactttga gttcacgttt
5701 ctggtgccac caactgtgga gtcaaagact aagcccttta cacttcccat tctgactctt
5761 ggggagctgt ccaactccag attccccgct ccgatagata tgttgtatac tgaccctaat
5821 gaggcaattg tggtgcaacc acaaaatggt aggtgcactc tagatggaac acttcagggg
5881 accacccaac tggtgcccac ccaaatttgc tccttcaggg gcacgctaat tagccagacg
5941 tcgaggtctg cagattcaac agattcggcc ccacgggtga ggaaccaccc tctccacgtt
6001 cagctgaaga acctcgatgg gacaccatat gatccaacag atgaggtgcc ggcagttttg
6061 ggtgccatag atttcaaagg aactgtgttt ggggtcgcta gtcaaagaaa caccacaggg
6121 agctctatag gagcaacccg cgcccatgaa gtgcacatag acaccacaaa ccccagatac
6181 accccaaagc taggctctgt gttgatgtat tctgaatcta ctgattttga tgatggacaa
6241 cctacccgct tcacccccat tggaatggga gccgatgatt ggcaccaatg ggaattgccc
6301 gaatattctg gtcatcttac tcttaacatg aacttggctc ccgcggttgc ccctgctttc
6361 cctggtgagc gcattctctt cttcagatca gtggtaccgt ccgctggtgg ctatggatca
6421 ggtcacatag attgcctcat tccacaggaa tgggttcagc atttctacca ggaggccgct
6481 ccatcacagt ctgcggtggc ccttattaga tatgtcaacc ctgacactgg aagaaacatc
6541 tttgaggcaa aacttcatag ggaagggttc atcactgtgg caaattctgg aaacaacccc
6601 atagttgtgc ccccaaatgg ttacttcagg ttcgaggcct gggtcaatca attctacaca
6661 ctcaccccca tgggaattgg acaggggcgc agaagagttc aataatggca ggagctttct
6721 tagctggatt ggcaggtgac gccataacaa gtggtgtcgg gtccctaatc aatgctgggg
6781 ccaatgcaat taaccaaaag gtagagtatg attttaataa acagctccaa ttggcatcct
6841 tcaaacatga caaagagatg ttgcagtcac aagtgttggc cactaaacag ctccagcaag
6901 agatgatgaa cataaggcaa ggggtcttgt ccgctggcgg cttttcccct acagatgccg
6961 caagaggtgc tgtaaatgca ccgatgacaa aaattttgga ttggaatggg actaggtact
7021 ttgctccaaa cagtatgaag acaaccagct actcgggcca gttttccagc aaccctgtgc
7081 ataggcagcc cactctaacc cgttctgaat ccccaaaaat caaggttaat agtgattctg
7141 ctagtgtgta tagttctgca actactactc cttcacaatc aacccactca acggctttga
7201 ctgcggggtc tagctcatct aggacaacat cctcttctgc agcagcttcc accctatcta
7261 ggaccagcga ctgggtgaga ggacaaaatg agaggcttag cccgtttatg gatggtgctc
7321 ttcaaacaac ttttgtcaca ccaccatcga gcaaggcttc atcatatggg tcggtctcaa
7381 ccgttcccaa agctgttttg gactcctgga ctcctatgtt taatacccat agacagcctc
7441 tcttcgctca tgttcgcagg cgaggggagt cacagattta gtgaaaagat tgattaggtt
7501 ttctttcttt c
//