Typing tool
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Typing tool
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Complete norovirus genomes
| LC790052 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5087
ORF2: 5068..6690
ORF3: 6690..7496
LOCUS LC790052 7517 bp RNA linear VRL 13-DEC-2023
DEFINITION Norovirus GII.4 Sydney 2012 GII/Hu/JP/2022/GII.4Sydney[P31]/
TKY220151 RNA, nearly complete genome.
ACCESSION LC790052
VERSION LC790052.1
KEYWORDS .
SOURCE Norovirus GII.4 Sydney 2012
ORGANISM Norovirus GII.4 Sydney 2012
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7517)
AUTHORS Asakura,H., Yokota,S., Kuroki,K., Isogai,M., Hayashi,Y.,
Fujiwara,T., Miyake,H., Nagashima,M. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2023) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus GII.4 Sydney 2012"
/mol_type="genomic RNA"
/isolate="GII/Hu/JP/2022/GII.4Sydney[P31]/TKY220151"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1776356"
/country="Japan"
/collection_date="2022-04"
gene <1..5087
/gene="POL"
CDS <1..5087
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEV21170.1"
/translation="NDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPP
KEIPPRPPRPPTPELVKKIPPPPPNGEGELVVSYNAKDGVSGLPELTTVRQPEETNTA
FSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE
LAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGNLKPLN
ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL
VPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRSIEDAVLDLEAIENNHMTTLLKDRDSLTTYMRTLDLEEEKARKLSTKSASP
DIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIA
ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKSAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQ
ALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIR
YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVENTEEMANKDGCLKPKD
DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI
RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT
STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRADVTGMILEEGAPEGTVATL
LIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAP
KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF
TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIR
CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
DVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
FETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5068..6690
/gene="VP1"
CDS 5068..6690
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BEV21171.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHTTGTHNYTMNLASQNWSDYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFGTDTNNDLEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTVPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHIGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6690..7496
/gene="VP2"
CDS 6690..7496
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BEV21172.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ctaacgacgc ttccgctgcc gctgttgcca acagcaacaa cgacatcgca aaatcttcaa
61 gtgacggtgt gttttctaac atggctgtca cttttaagcg ggccctcggg gcgcggccta
121 aacagccgcc cccgaaggaa ataccaccca gacccccgcg accacccaca ccagaattgg
181 tcaaaaagat ccctcctccc ccacccaacg gggagggtga actagtggtc tcttacaacg
241 ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt cagacaaccg gaagaaacca
301 acacggcgtt cagtgtcccc ccactcaacc aaagggagag cagggacgcc aaggagccac
361 taactggtac aatcattgaa atgtgggatg gagaaatcta ccattacggc ctgtacgtgg
421 aacgaggtct tatacttggt gtgcacaagc caccagcagc catcagcctc gctaaggtcg
481 agctggcacc actctctttg ttttggagac ctgtatacac cccccagtac cttatctctc
541 cagatactct taggagatta catggagagt cattccccta cactgcattt gacaacaatt
601 gctacgcctt ttgttgttgg gtattagacc taaacgactc atggctaagc aggagaatga
661 ttcagagaac aacaggcttc tttaggccgt accaggattg gaacaggaaa cccctcccca
721 ctatggatga ttccaaatta aagaaggtag ccaacatatt tttgtgcact ttgtcttcac
781 tattcaccag gcccatcaag gacataatag ggaatttgaa acctctcaac atccttaata
841 ttctggctac atgtgattgg actttcgcag gcatagtgga atccttaata ctcttggcag
901 aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttgctag
961 gtgattacga actgcaagga cccgaggacc ttgcagtgga actggtccca atagtgatgg
1021 gggggatagg tttggttcta ggatttacca aagagaagat cggaaagatg ctgtcatctg
1081 ctgcatccac tttaagagct tgtaaagacc ttggtgcata cggactggaa atcttaaaat
1141 tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct atggtgagat
1201 ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg accaccctgc
1261 tcaaagacag agacagcttg acaacctaca tgagaaccct tgaccttgag gaggagaaag
1321 ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatt aactctcttc
1381 tggcaagaat cgctgctgca cgctccttag tgcatcgggc gaaagaagag ctctccagca
1441 ggccgagacc tgtcgttgta atgatatcgg gaagaccagg gatagggaaa actcaccttg
1501 ccagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt gtgggcctta
1561 tcccacgcaa tggtgtcgac cactgggacg catacaaggg cgaaagggtc gtcctatggg
1621 acgactatgg aatgagcaac cccatccatg atgcccttag gttgcaggag cttgctgaca
1681 cttgccccct cacactaaat tgtgacagaa ttgagaacaa aggaaaagtc tttgacagtg
1741 acgccataat tatcaccacc aacctggcca acccagcacc actggattat gtcaactttg
1801 aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag gtggagaagg
1861 cgaagcgcga cttcccaggt caacctgaca tgtggaagag cgctttcagt cctgacttct
1921 cacacataaa actgtcattg gctccacagg gtggttttga caagaacggc aacaccccgc
1981 atggaaaagg ggttatgaag accctcacca ctggctccct catcgcccga gcatcagggt
2041 tactccatga gaggctagat gaatatgaat tgcaaggccc agccctcacc accttcaact
2101 ttgaccgcaa caagatactt gcttttagac agctcgctgc tgaaaacaag tatgggctga
2161 tggacacaat gagagttgga aaacagctca aggatgtcaa gactatgtca gacctcaaac
2221 aggcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt ggcacctaca
2281 cacttgaggc tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt gccactgtgc
2341 agaccaacaa tgaactagcc ggtgccctac accacctaag atgcgctaga atcagatact
2401 atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg gctgcattcg
2461 tcaccacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag ccacaggtgg
2521 aaaacacaga agagatggcc aacaaagatg gttgcctaaa acctaaagat gatgaagagt
2581 ttgtcgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac aagtccggcc
2641 gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgacgaggag tatgatgaat
2701 acaagagaat cagagaagaa aggaatggta agtactccat agaagagtac cttcaggaca
2761 gagacaggta ctacgaggag gtggccattg ctagggcaac cgaagaggat ttctgtgagg
2821 aggaggaggc caaaatccgg cagaggattt tcagaccaac aaggaaacaa cgcaaagaag
2881 agagggcttc tctcggcttg gtcacaggct ctgaaatcag gaagagaaac ccagaagact
2941 tcaaacccaa gggaaagctg tgggctgatg acgacagaag tgttgactac aatgagaaac
3001 tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt tcaggctggg
3061 gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc caaggtgcaa
3121 aggagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt gaattctgcc
3181 gattgagatt cccaaagcca atcagagccg atgtgacggg catgattcta gaagaaggtg
3241 cgcccgaggg gaccgtggcc acactgctca tcaagagacc aactggagag ctcatgcctc
3301 tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca gttggagggc
3361 aaatgggtat gctcctgaca ggatccaacg ccaagagtat ggacctaggc acaacaccag
3421 gcgactgcgg ttgcccctac atctacaaga gggggaatga ctacgtggcc ataggggtcc
3481 atacggctgc tgcccgtgga ggaaacactg tcatatgtgc cacccaggga agtgagggag
3541 aggccacact tgaaggaggt gacagtaaag ggacatactg tggcgcacca atcttgggcc
3601 cagggagcgc tccgaagctc agcaccaaga ccaagttttg gagatcatcc acaacaccac
3661 tcccacctgg cacctacgaa ccagcctacc tcggtggcaa agaccctaga gtcaaaggtg
3721 gcccttcatt gcaacaagtt atgagggacc agctgaagcc attcacagaa cccagaggca
3781 aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat gtccttgagc
3841 aaacaattga cccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc cttgacaaaa
3901 ccacctccag cggccaccca caccacatgc ggaaaaatga ctgttggaat ggggagtcct
3961 tcacaggaaa gttggctgac caagcctcca aggccaacct aatgtttgaa gagggaaaga
4021 acatgactcc agtctacaca ggtgcactta aagatgagtt ggtaaagacc gataaagttt
4081 atggtaaggt caagaagagg cttctatggg gttcagatct ggcgaccatg atacggtgcg
4141 cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgttaca ctccctgtca
4201 gagttggtat gaacatgaat gaggatggcc ccatcatctt cgagaagcac tccagatata
4261 gatatcatta tgatgctgac tattcccggt gggactcaac acaacaaagg gatgtgctag
4321 cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc caggtagttg
4381 cagaagacct cctttcccct agcgtgatgg atgtgggtga ctttcaaata tcaataagtg
4441 agggtctccc ctctggggtg ccttgcacct cccagtggaa ttccatcgcc cactggctcc
4501 tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt caggccaact
4561 cccttttctc cttctatggt gatgatgaga ttgtaagcac agacataaag ttggacccag
4621 agaggctaac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc gacaaaactg
4681 aaggacccct cgtcatctct gaagacctgg atggtctgac attcctccgg agaactgtga
4741 cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctt aggcaaatgt
4801 actggaccag gggtcccaac catgaagacc catttgaaac aatgatacca cactcccaaa
4861 gacccataca attgatgtcc ttgttgggcg aggctgcact ccacggcccg gcattctaca
4921 gcaaaatcag caaattagtc attgcagagt tgaaggaagg tggcatggat ttttacgtac
4981 ccagacaaga gccaatgttc aggtggatga gattctcaga tctgagcacg tgggagggcg
5041 atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgt caacccatct
5101 gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc tctggagccc
5161 gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat tgacccctgg
5221 attagaaaca attttgtaca agcccctggt ggagagttta cagtatcccc tagaaacgct
5281 ccaggtgaaa tactatggag cgcgcccttg ggccctgatc taaatcccta cttgtctcat
5341 ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat tctcgcgggg
5401 aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt cccaactgaa
5461 ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt taggcaacta
5521 gaacctgtgt tgattccctt gcccgatgtt aggaataatt tctatcatta taatcaatca
5581 aatgacccca ccattaagtt gatagcaatg ttgtacacac cacttagggc taataatgct
5641 ggggatgatg tcttcacagt ctcttgccga gttctcacga gaccatcccc cgattttgac
5701 ttcatatttc tagtgccacc cacagttgag tcaagaacta aaccattctc tgtcccagtc
5761 ttaactgttg aggagatgac caactcaaga ttccccattc ctttggaaaa gttgttcacg
5821 ggtcccagca gtgcctttgt tgtccaacca caaaacggta ggtgcacgac tgatggcgtg
5881 ctcctaggca ccacccaact gtctcctgtc aacatctgca cctttagagg agatgtcacc
5941 cataccacag gtactcataa ctatacaatg aatttggctt ctcaaaattg gagtgactac
6001 gacccaacag aagaaatccc agcccctcta gggactccag actttgtggg gaagattcaa
6061 ggcatgctta cccaaaccac aaggacagat ggctcaacac gcggccacaa agccacagtg
6121 tatactggga gcgccgactt tgctccaaaa ctgggtagag ttcaatttgg aactgacaca
6181 aacaatgatc ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt catccaagat
6241 ggtggcacca cccatcgaaa tgaaccccaa cagtgggtgc tcccaagtta ctcaggcagg
6301 aacactccta atgtgcatct ggcccccgct gtggccccca cttttccggg tgagcaactc
6361 ctcttcttta gatccaccgt gcccggatgc agcgggtacc ccaacatgga tttggattgt
6421 ctgctccccc aggaatgggt gcagtacttc taccaggagg cagccccagc acaatctgat
6481 gtggctctgc taagatttgt gaatccagac acaggtaggg ttttatttga atgtaagctt
6541 cataaatcag gctatgttac agtggctcac attggccaac atgatttggt tattcccccc
6601 aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc ccccatggga
6661 aatggagcgg ggcgtagacg tgcactataa tggctggggc tttctttgct ggattggcat
6721 ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg gccatcaacc
6781 aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atccttccaa tttagcagca
6841 atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa attgaggcta
6901 ccaaaaggtt gcaacaagaa atgatgaaag ttaagcaggc aatgctccta gagggtgggt
6961 tctctgagac agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa gccttggact
7021 ggagcgggac aaggtactgg gcccctgatg ctaggactac aacatacaat gcaggccgct
7081 tttccacccc ccaaccatca ggggcgctgc caggaagagc taattttagg gatgctgtcc
7141 ctgctcgggg ttcctctagt aagtcttcta attcttctat tgctacttct gtgtattcaa
7201 atcaaactgc ttcaacgaga cttggttcta cagctggttc tggcaccagt gtctcgagct
7261 tcccgtcaac tgcaaggact aggagctggg ttgaggacca aagtaggaat ttgtcacctt
7321 tcatgagggg ggcccataac atatcgtttg tcaccccacc atctagcagg tcctctagcc
7381 aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc gctttcaaca
7441 cgcgcaggca gccactcttc gctcacattc gtaagcgagg ggagtcacgg gtgtaatgtg
7501 aaaagacaaa attgatt
//