Typing tool
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Typing tool
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Complete norovirus genomes
| LC771967 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS LC771967 7550 bp RNA linear VRL 24-JUN-2023
DEFINITION Norovirus GII.P7/GII.6 Hu/Japan/KaoGII6/2019 RNA, complete genome.
ACCESSION LC771967
VERSION LC771967.1
KEYWORDS .
SOURCE Norovirus GII.P7/GII.6
ORGANISM Norovirus GII.P7/GII.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yashiro,S., Morimoto,T., Takai-Todaka,R., Haga,K. and Katayama,K.
TITLE Evaluation of human norovirus inactivation with ethanol based
pH-adusted sanitizers using human intestinal epithelial organoids
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7550)
AUTHORS Katayama,Y. and Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2023) Contact:Yukie Katayama Kitasato University,
Omura Satoshi Memorial Institute, Infection Control and Immunology;
5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan URL
:https://www.kitasato-u.ac.jp/lisci/
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GII.P7/GII.6"
/mol_type="genomic RNA"
/isolate="Hu/Japan/KaoGII6/2019"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1776362"
/country="Japan"
/collection_date="2019"
CDS 5..5098
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="BEK62372.1"
/translation="MKMASNDATTAFGSQNSVNDSINTAPSSKEEVGAFSNIKVGFKR
MLGAVPKGTKAPSSDRHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFQLQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESGK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVSG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVRTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6722
/gene="VP1"
CDS 5079..6722
/gene="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="BEK62373.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESNDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..7498
/gene="VP2"
CDS 6722..7498
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEK62374.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKTKVNGDSASVYSSASIAPSQST
RSMALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtatc aacaccgccc cttctagtaa agaagaggtt ggtgcattct ccaacatcaa
121 agttggtttt aagagaatgc tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 ccggcactgc ccctcagtta agatcgggac caagacatta acagttcccc ctgagccccc
241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggag actgtgcgcg ggttaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cattgagtga
361 aagggagcac agaccagcca ccgaaccgct tcctggcaca atattggaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaagcc
481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaactatc tggtctgccc agacacgttg aagggccttg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagca ggagaagcat ctctaggact accggcttct tcaaaccata
721 ccagtcttgg aataggaaac cccttccgac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcaatt ctctgtgcac ttggatcgct gttttcaaaa ccaatcaagg acctattggg
841 caaacttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagtcatcc taatggcgga acttttcggc atcttttgga caccgccaga
961 tgtctccagt ttcatagctt ccctgatagg tgattttcaa ttgcaagggc ctgaggacct
1021 ggctgtggag cttgtacccg tggtcatggg tggcatagga atggttctcg gcttcactgc
1081 tgagaagata ggccgcatgc tatcgtccgc tgcatcaaca ttacgggcgt gcaaagactt
1141 ggggaattat gctcttgaca tattgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccctaagggc gattgaggac gccgtcctgg acatggaagc
1261 tataggaaat aaccatctta caaccctcct caaggacaag gatagcctca cggctttcat
1321 gaagactcta gatctagaag aagagaaggc aaggaagctg tccaccaaat catcctcgcc
1381 agacattgtc ggcaccatta atgccatact agctagaata gctgctgcca ggtccctctt
1441 gcacaaggcc aaagaagaaa tgttcagcag gatcagaccc gtggttgtca tgatctcggg
1501 tagacctggc attggcaaaa cccacatggc aagacacttg gccaagagta tcgccaacac
1561 catgagcggc gaccagaggg tggggctcgt cccacgcaac ggggttgatc attgggacgc
1621 ctatagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgcactaaca ctgcaagagc tggccgacac ctgcccagta actttaaact gtgataggat
1741 tgagaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttagtcaa
1801 cccagcgccc ctcgattatg taaatttcga ggcgtgctcc agaagggttg actttctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccccggcc aacctgacat
1921 gtggaaggat cattttaaac cagacttttc ccacataaaa ctgaccctag ccccacaggg
1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggcct tgttcatgag aggagagacg agtttcagct
2101 tcaggggaac gaccttcaaa catataactt tgacaccaac agagtctctg catttagaaa
2161 gctggccgca gacaacaagt atgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tatagaaact ccaaataccg agtctcttcc aatggtaaag gttctgtctc
2341 cgttgacaaa gttgaggacc aaacatccca gactgcaaac gaagtgggtg cagcactcct
2401 cagactcaga caggcaagag ccagatacta tgtcagctgc ttccaagacc tcgtttatac
2461 tctaatacag gtcgccggag catcattcgt cgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccggaa aggaagtggc
2581 tcaaggcaga tgggagattg agcccaagga cacagaaccg gaaggtaaga agggtaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctctagt aagggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggagta
2761 cctgcaagac cgggatcgct actatgagga agtggcagtc gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaaaca
2881 gaggaaagaa gaaagggggg tgcttggttt ggtttctggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccga aaggcaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc
3121 taaggggatt aatgaacttt ttggagttga gatcaaacag attcagattc ataagtctgg
3181 agagttctgc aggtttagat tcccaagacc aattaggcca gatgttacag ggctcgtgct
3241 ggaggaaggc gctccagaag gcactgtctg ctccatactc gtaaagagac ccacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac gcatgcatcc atgaaaatac agggtaggac
3361 cgtcggtggc cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg
3421 caccggccct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaacctt ggcacttact gcggtgctcc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgttcatc
3661 accagacgct ctgccaccag gcacttatga gcctgcctac ttgggaggta aggaccctag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgcgcctc
3901 actggacaag accacttcca gtggtagccc ccatcatgtc aggaaaaatg accactggaa
3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcgctt aaagatgaac tagtcagaac
4081 tgataagatc tacaagaaga taaagaaaag gctcttgtgg gggtcggatc ttggtacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggacagc atgaaggcaa gctgcatagc
4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
4261 ttctaagtat aggtaccatt atgatgctga ctactccagg tgggactcaa cccagcaaag
4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg atttcgtcat
4441 ctcagtccag gagggcctgc catcaggggt cccatgcaca tcacaatgga actcaatagc
4501 acactggatc ctaaccttga gtgcgatggc agaagtgtcg ggtctctcac cagatgttgt
4561 tcaagcccat tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttga cacaaaagct cagggagtat ggcctggtcc ccacccgacc
4681 tgacaaaact gagggtcccc ttgtaataac tgaagatctc accggcctaa cgttcctgcg
4741 taggtcaatc gcacgggacc cagctgggtg gtttggaaaa ttggaccaag actcaatcct
4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
4861 tcattcccag cgggccacac aacttatggc ccttctcggt gaggcttcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt tattaatgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggtcaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggtgag atgcttttaa atcttgaatt aggccctgag ctcaaccctt
5341 atctgagtca tttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 tccctgttga gaacattagt gcagcccaaa tcacaatgtg cccccatgta attgttgatg
5521 taagacagct tgagccagtg cttttgcccc tccctgacat aaggaacaga ttctttcatt
5581 acaatcagga aaataccccc cggatgagac ttgtggctat gttgtataca ccccttagag
5641 caaattctgg cgaggatgtg tttacggtgt cttgcagagt tctgacccgc cccgcccctg
5701 actttgagtt cacgtttttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
5761 tccctattct gactcttgga gagctgtcca actccagatt ccccgctccg atagatatgt
5821 tgtacactga ccccaatgag gcaattgtgg tgcaaccaca aaatggcagg tgcacattag
5881 atggaacact ccaggggacc acccaactgg tacccaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
6061 aggtgccagc agttttgggt gccatagatt tcaaaggaac tgtgtttggg gtcgctagcc
6121 aaagaaacac cacagggaac tctataggag caacccgcgc ccatgaagtg cacatagaca
6181 ctacaaaccc tagatacacc ccaaagcttg gctctgtgtt gatgtattct gaatctaatg
6241 attttgatga tggacagcct actcgcttca cccccatcgg catgggagcc gatgattggc
6301 accaatggga attgcccgaa tattctggtc acctcactct caacatgaat ttggcccccg
6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg
6421 ctggtggtta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
6481 tctaccagga ggccgctcca tcacagtccg cggtggctct catcagatat gtcaaccctg
6541 acactggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
6661 tcaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc
6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gaatatgatt ttaataaaca
6841 gctccaattg gcatccttca aacatgacaa agagatgttg caatcacaag tactggccac
6901 taaacagctc cagcaggaga tgatgaatat aaggcaaggg gtcttgaccg ctggcggctt
6961 ttcccccaca gatgccgcga gaggtgctgt gaacgcgccg atgacaaaaa tattggattg
7021 gaatgggaca aggtacttcg ccccaaatag tatgaagaca accagttatt cgggccagtt
7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgt tctgaacccc caaaaactaa
7141 ggttaatggt gattctgcta gtgtgtatag ttctgcatct attgctcctt cacaatcaac
7201 tcgctcaatg gctttgactg cggggtccag ctcatctagg acaacatcct cttctgcagt
7261 agcttccacc ctatctagga ctagtgattg ggtgagagga caaaatgaaa ggcttagccc
7321 gtttatggat ggtgctctcc aaacaacttt tgtcacgcca ccatcgagca aagcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
7441 tacccatagg cagcctctct tcgctcatgt gcgtaggcga ggggagtcac agatttagtg
7501 aaaagattga ttaggttttc tttctttctt cttttccttt tctttctttt
//