Typing tool
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Typing tool
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Complete norovirus genomes
| LC769715 | GII.3 | |
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| GII.P16 |
ORF1: 1..5089
ORF2: 5070..6716
ORF3: 6716..7480
LOCUS LC769715 7531 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.3[P16]/NICED-RV-1373, nearly complete
genome.
ACCESSION LC769715
VERSION LC769715.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7531)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7531
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2019/GII.3[P16]/NICED-RV-1373"
/isolate="Hu/IN/2019/GII.3[P16]/NICED-RV-1373"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2019-04-22"
/note="genotype: GII.3[P16]"
gene <1..5089
/gene="POL"
CDS <1..5089
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74189.1"
/translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGAKPKQPA
PRDEPQKPLRPSTPELVKRIPPPPPNGEEGVEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
RVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIR
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMITPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMKVGNQLKGVKTMEE
LKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHA
RIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKGEAPKS
EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGSA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQAVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPNHED
PSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5070..6716
/gene="VP1"
CDS 5070..6716
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74190.1"
/translation="MKMASNDAVPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRSHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6716..7480
/gene="VP2"
CDS 6716..7480
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74191.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANVINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtctaacgac gctaccgttg ccgttgcttg caacaacaac aacgacaagg aaaaatcttc
61 aggtgaaggc ttatttacaa atatgtcttc caccttaaag aaagccctcg gggctaagcc
121 caaacagcct gccccgagag acgaaccaca aaagccccta aggccatcaa ctcccgagtt
181 ggtcaagagg ataccccctc ctccacctaa tggcgaagaa ggagtagaac cagtcattag
241 gtacgaggtt aagagtggga tctctggcct gcccgagctt acaacagtcc cccaaccgga
301 cgtggccaac acggcattta gtgttccacc actgagcttg agagaaaaca gggaggccaa
361 ggagccgtta acaggggcaa tattagagat gtgggatgga gagatatacc actatggcct
421 gtacgtggag aaaggcctag tgttgggtgt gcacaaacca cctgcagcca taagcatggc
481 aagagtggag ctggcgccgc tgtcattgta ctggcgtgtg gtgtacactc cccaatacct
541 catctcccct gaaactctca ggaggctcaa cggagaggcg ttcccttaca ccgcctttga
601 caacaactgc tacgcctttt gctgctgggt actagacctc aatgactcat ggcttagcag
661 gaggatggtg caaagaacaa cgggcttctt caggccttac caagagtgga acagaaaacc
721 cctgcctacc atggatgact ccaaaattaa gaaggtagca aatatattcc tatgttcact
781 gtccacatta ttcaccagac ccataaaaga cctcatagga aaaattagac cattaaacat
841 attgaatatc ctagcaacgt gtgactggac gtttgccgga atagtggagt ctctgatatt
901 acttgctgaa ctcttcggag ttttctggac acccccagat gtgtctgcta tgatcactcc
961 cttactcggg gactacgagt tgcaagggcc ggaagacctc gccgttgagc tcgtacctgt
1021 agtaatggga gggattggtt tggtgttggg attcaccaaa gagaaaattg gcaaaatgtt
1081 gtcatcagca gcatcaacac tcagggcttg caaagatctt ggtgcctatg gcttagagat
1141 actcaaattg gtcatgaagt ggttcttccc aaagaaagag gaggccaatg agctagccat
1201 ggtgagggcc atagaggatg ccgtactaga tcttgaggca atagaaaata accacatgac
1261 aaccctgtta aaagacaaag acagcttagc aacatacatg aaaacactgg acatggagga
1321 ggagaaagcc agaaggttgt ccacaaaatc tgcatcccct gacatagttg ggacaatcaa
1381 cgccctgctg gctcgaatag cagcggccag gtcattagtc cacagggcca aagaagagct
1441 atctagcagg ataagaccag tagttgttat gatatctggc aaaccaggaa taggcaaaac
1501 tcatctggcc agggaggtgg caagaaaggt agcatccact ctcacagggg atcaaagagt
1561 cggactcata ccaaggaacg gcgtggacca ttgggatgca tacaaaggtg agagagtcgt
1621 gctgtgggac gactatggca tgagtaaccc cattcatgat gctcttcgca tacaagaatt
1681 agctgatacg tgtcccctta ccttaaattg tgacagaatt gaaaataagg gtaaagtctt
1741 tgacagtgaa gtcataataa ttacaacaaa ccttgccaat ccagccccac ttgattatgt
1801 caactttgag gcctgttcca ggagaattga tttcctggtg tacgctgagg caccagaagt
1861 agaaaaggca aaacgggact ttcctggtca gccagacatg tggaaggacg cctttaagcc
1921 ggacttttca cacatcaagc tacagcttgc acctcagggc ggctttgaca agaatggcaa
1981 caccccacat gggaaaggag tgatgaagac cctcactacc ggttctctga ttgcccgcgc
2041 atcaggccta ctgcatgaga ggatggatga atttgaactc caaggtccca caatcaccac
2101 cttcaatttc gaccggaaca gagtcacagc attcaggcaa ttggctgcag aaaacaagta
2161 tggattggtg gataccatga aagttggcaa tcaactaaaa ggagtgaaaa ccatggaaga
2221 actcaaacaa gcaatcagga atgtgaccat caagaggtgc cggatcatct acggtggctc
2281 cacgtatgac cttgaatctg acggcaaggg caaagttttg gtggagaaag tcaagaacac
2341 ctctgtacag accaacaacg agttggccgg ggccctgcac catctcaaac atgcccgaat
2401 caggtactat gtcaaatgtg ttcaagaagc agtctattcc atcatacaaa ttgccggcgc
2461 tgcgtttgtt accacgcgca ttgcacgccg catgaacata caagaactat ggtcgaagcc
2521 acaattagat caaaatgaat cagagactaa aggagaggcc cccaagtcag aagatgacga
2581 gttcatcata tcttctaagg acatcaagga ggagggaaag aagggcaaga acaaaactgg
2641 ccgtggcaag aaacacactg cattttccag caagggcttg agcgatgagg agtacgacga
2701 gtacaagagg ataagagaag agagaaatgg gaagtactct atagaggagt atcttcaaga
2761 cagagacagg tactatgagg agctcgccat cgccaaggct acggaagaag atttctgtga
2821 agaggaggag atcaaaatcc gtcagagaat tttccgtccc accaggaagc aaagaaagga
2881 agagagggcc acattagggc tagtaacagg ttcagaaatc agaaaaagaa accctgatga
2941 cttcaaaccc aaagggaagc tgtgggccga tgacaacaga agtgttgact acaatgagaa
3001 actggacttt gaggcccccc caagcatatg gtctaggatt gtgagttttg gttctggctg
3061 gggcttctgg gtatcaccaa gcttgtttat aacatcaact catgtaatcc ccgcaggcat
3121 aacagaagca tttggagtcc ccatcaaaca aattcagatc cacaaatcag gtgaattttg
3181 ccgattcaga ttcccaaaac caattagacc agatgtgaca ggaatgatct tagaagaagg
3241 tgcgcctgaa ggcaccgtgg cgactgtgct catcaaacgc cccaccggag aactcatgcc
3301 tcttgcagcc agaatgggaa cacacgcaac catgaaaatt caaggccgca tggttggtgg
3361 acagatgggt atgttgctca ctggatcaaa tgctaaagga atggatttgg gaacaactcc
3421 tggtgactgt ggttgtcctt acatctataa aaggggcaat gattatatag tcattggggt
3481 gcacactgca gcagcccgtg gtggaaacac cgtcatctgt gccacacagg gaagtgaggg
3541 tgaggcaact ctcgagggtg gagatgacaa agggacatac tgtggggcac ccattctagg
3601 ccctgggagt gcaccaaaat tgagcaccaa aaccaaattt tggaggtcat cgaacacgcc
3661 ccttccacca gggacatatg aacctgccta tctcggtggc cgtgatccgc gtgttaaggg
3721 tgggccctcc ttgcagcagg tgatgagaga ccagttgaag ccattcactg aacccagggg
3781 caaacctcca agaccaagtg tattggaagc agccaaacaa accattatta atgtccttga
3841 acaaaccctg gaccctccac aaaaatggac atacgcacag gcgtgtgcct cacttgacaa
3901 aaccacctcc agcgggcatc cccatcacgt ccgaaagaat gaattctgga atggtgaaac
3961 cttcactggt aaattggcag atcaagcatc aaaggcaaac ctaatgtttg aggaagggaa
4021 acatatgaca ccagtgtata cagcagcact caaggacgag ctagtcaaga ctgagaaaat
4081 ctatggaaag atcaagaaga gactgctctg gggctctgac ttgtccacca tgatccggtg
4141 cgctaggtca tttggtgggc tcatggacga gatgaaggca cactgcatat cactcccagt
4201 acgagttggc atgaatatga atgaagatgg tccaataata tttgagaagc attccagata
4261 caaataccac tatgatgcag actactctcg ttgggattca acacaacaga gggcagtact
4321 agcggcagcc ttggaaatca tggttagatt ctctgcagaa ccacaattgg cacaagcagt
4381 cgctgaggat ctgctggccc ctagtgtagt agatgtagga gacttcaaaa tcacaataaa
4441 tgaagggctc ccatctggtg tgccgtgcac ttctcaatgg aactctatcg cacactggct
4501 gctaactctc tgcgccttgt ctgaagtcac caaactgtcc cctgacatca tacaggcaaa
4561 ttccatgttc tcattttacg gtgatgacga gattgtcagc accgacataa aattggaccc
4621 tgaacagtta accgccaaat tgaaggagta cggcctgaaa ccaacccgcc cagacaagac
4681 cgagggaccc ctgatcatca gtgaggattt gaacggactc actttcctcc gaaggacggt
4741 gactcgtgac ccagctggct ggtttgggag actggaccaa agctcaattt tgaggcagat
4801 gtactggact agaggaccaa atcatgaaga ccccagtgag acaatgatac cccattctca
4861 aagacccata cagctcatgg cactgcttgg tgaagcctct cttcacgggc cctctttcta
4921 cagtaaaatc agtaaattgg tcataactga actcaaagaa ggtgggatgg acttttacgt
4981 gccaaggcag gaacccatgt tcaggtggat gaggttttct gacttgagca cgtgggaggg
5041 cgatcgcaat ctggctccca attttgtgaa tgaagatggc gtcgaatgac gccgttccat
5101 ctaatgatgg tgccgccggc ctcgtcccag agatcaacaa tgaggcaatg gcgctggagc
5161 cagtggcggg tgcagcgata gcagcacccc tcactggtca gcaaaatata attgatccct
5221 ggattatgaa taattttgtg caagcacctg gtggtgagtt tacagtgtcc cctagaaatt
5281 cccctggtga agtccttctt aatttggaac tgggcccaga aataaatccc tatttggccc
5341 accttgctag aatgtataat ggctatgcag gtggatttga agtacaggtg atcctagctg
5401 gaaatgcgtt tacagcagga aagataatct ttgcagccat cccccccaat tttccagttg
5461 acaatttaag tgcagcacag atcacaatgt gcccacatgt gatcgtggat gtcaggcagt
5521 tggaaccagt caacctcccg atgcctgacg ttcgcaacaa cttctttcat tataaccaag
5581 ggtctgactc gaggttacgc ctaattgcaa tgctgtacac acctcttagg gcgaacaatt
5641 ctggggatga tgtttttact gtgtcttgta gagtgttaac tagacctagt cctgatttct
5701 cattcaattt ccttgtgcca cctactgtgg agtcaaagac aaaacccttt tccctcccta
5761 tcctgactat ctctgagatg tccaattcta ggttcccagt accaattgat tccctacata
5821 ccagccctac tgaaaatatt gttgttcagt gccaaaatgg gcgcgtcacc cttgatggtg
5881 aactgatggg caccacccaa ctcttgccta gccaaatctg tgccttcagg ggcgttctca
5941 ccagatcaac aagcagaacc agtgaccagg ccgatacagc aacccctaga ttgtttaatt
6001 attattggca tatacaattg gataatctaa atggaacccc ttatgatcct gcagaagaca
6061 taccaggccc cttagggaca ccagatttcc gtggcaaagt ctttggcgtg gccagccaga
6121 gaaatcctga tgccacgact aggtcgcatg aggcaaagat agacaccaca tctggccgct
6181 tcaccccaaa gctaggttca ttagagatat ccactgagtc tagtgatttt gaccaaaacc
6241 aaccgacaag attcacccca gttggcattg gagttgacca tgaggcagac tttcaacaat
6301 ggaccctacc cgactatgct ggtcagttca cacacaacat gaacttagcc ccagctgttg
6361 ctcccaactt ccctggtgag cagctccttt tcttccgctc acatttgcca tcttctggtg
6421 ggcgatccaa cgggattcta gactgcctgg ttccccaaga atgggtacag cacttctacc
6481 aagagtcagc cccctctcag tctcaagtgg ccctggttag gtatgttaat cctgacactg
6541 gcagagtgtt atttgaggct aaactacata aactaggttt catgactata gccaagaatg
6601 gtgattctcc aataactgtc cctccaaatg gatactttag gtttgaatct tgggtgaacc
6661 ccttttacac acttgccccc atgggaactg ggaatgggcg cagaaggatt caataatggc
6721 tggagctttt atagcaggat tggctggtga catgctcaca aatactgtag gatctttagt
6781 taatgcagga gctaatgtta ttaatcaaac aattgatttt gaaaacaata aatatttgca
6841 aaatgcttct tttaatcatg ataaggagat gttgaatgca caagttgagg caacaaagaa
6901 gttacaggct gacatgattg ctatcaaaca aggggctctg accgctggcg gcttctcccc
6961 tactgatgca gcccgtgggg caattaacgc ccccatgaca aaagtcctag attggaatgg
7021 aacgagatac tgggcaccag gtgccacctc cacgacctcg atgtcgggtg gctttacaca
7081 tcaaactgtg cacagaccca caccaaactt taaaacgaac caggctccca aatccacacc
7141 cagcagtgga tctacagtga ggtcaaactc aacccaaatc actagcctga gctcacactc
7201 gtccgggtcg tctcgatcca gcgggtctac agtcatcagc tcaataccat cctctaacag
7261 gactagggac tgggtcaacc aacaaaattt taatttggaa ccacacatgc ctggatctct
7321 taggacagct tttgtctctc caccatctag tacagcctct agctcaggca cagtctcgac
7381 tgtgcccaaa aatgttttgg actcctggac atctgcgttt aacacgcgca gacagccgct
7441 atttgcacac cttcgcagaa ggggggagtc aaatgtttag tgaaaagatt attttaaatt
7501 tggtttaaat taggtttaat ttggaatctt t
//