Typing tool
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Typing tool
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Complete norovirus genomes
| LC769713 | GII.3 | |
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| GII.P16 |
ORF1: 1..5098
ORF2: 5079..6725
ORF3: 6725..7489
LOCUS LC769713 7552 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2018/GII.3[P16]/NICED-RV-988, nearly complete
genome.
ACCESSION LC769713
VERSION LC769713.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7552)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7552
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2018/GII.3[P16]/NICED-RV-988"
/isolate="Hu/IN/2018/GII.3[P16]/NICED-RV-988"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2018-11-26"
/note="genotype: GII.3[P16]"
gene <1..5098
/gene="POL"
CDS <1..5098
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74183.1"
/translation="KMASNDATVAVACNNNNDKERSSGEGLFTNMSSTLKKALGARPK
QPAPRDEPQKPLRPSTPELVKRIPPPPPNGEEGEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMKVGNQLKGVKT
MEELKQAIRSVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKGEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQVVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPDQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5079..6725
/gene="VP1"
CDS 5079..6725
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74184.1"
/translation="MKMASNDAVPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6725..7489
/gene="VP2"
CDS 6725..7489
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74185.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaagga
61 aagatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg
121 ggctaggccc aaacagcctg ccccgagaga cgaaccacaa aagcccctaa ggccatcaac
181 tcccgagttg gtcaagagga taccccctcc tccacctaat ggcgaagaag gagaagaacc
241 agtcattagg tacgaggtta agagtgggat ctctggcctg cccgagctta caacagtccc
301 ccaaccggac gtggccaaca cggcatttag tgttccacca ctgagcttga gagaaaacag
361 ggaggccaag gaaccgttaa caggggcaat attagagatg tgggatggag agatatacca
421 ctatggcctg tacgtggaga aaggcctagt gttgggtgtg cacaaaccac ctgcagccat
481 aagcatggca agagtggagc tggcgccgct gtcattgtac tggcgtgtgg tgtacactcc
541 ccaatacctc atctcccctg aaactctcag gaggctcaac ggagaggcgt tcccttacac
601 cgcctttgac aacaactgct acgccttttg ctgctgggta ttagacctca atgactcatg
661 gcttagcagg aggatggtgc aaagaacaac gggcttcttc aggccttacc aagagtggaa
721 cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtagcaa atatattcct
781 atgttcactg tccacattat ttaccagacc cataaaagac ctcataggaa aaattagacc
841 attaaacata ttgaatatcc tagcaacgtg tgactggacg tttgccggaa tagtggagtc
901 tctgatatta cttgctgaac tcttcggagt tttctggaca cccccagatg tgtctgctat
961 gatcgctccc ttactcgggg actacgagtt gcaagggccg gaagacctcg ccgttgagct
1021 cgtacctgta gtaatgggag ggattggttt ggtgttggga ttcaccaaag agaaaattgg
1081 caaaatgttg tcatcagcag catcaacact cagggcttgc aaagatcttg gtgcctatgg
1141 cttagagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg aggccaatga
1201 gctagccatg gtgagggcca tagaggatgc cgtactagat cttgaggcaa tagaaaataa
1261 ccacatgaca accctgttaa aagacaaaga cagcttagca acatacatga aaacactgga
1321 catggaggag gagaaagcca gaaggttgtc cacaaaatct gcatcccctg acatagttgg
1381 gacaatcaac gccctgctgg ctcgaatagc agcggccagg tcattagtcc acagggccaa
1441 agaagagcta tctagcagga taagaccagt agttgttatg atatctggca aaccaggaat
1501 aggcaaaact catctggcca gggaggtggc aagaaaggta gcatccactc tcacagggga
1561 tcaaagagtc ggactcatac caaggaacgg cgtggaccat tgggatgcat acaaaggtga
1621 gagagtcgtg ctgtgggacg actatggcat gagtaacccc attcatgatg ctcttcgcat
1681 acaagaatta gctgatacgt gtcccctcac cttaaattgt gacagaattg aaaataaggg
1741 taaagtcttt gacagtgaag tcataataat tacaacaaac cttgccaatc cagccccact
1801 tgattatgtc aactttgagg cctgttccag gagaattgat ttcctggtgt acgctgaggc
1861 accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagacatgt ggaaggacgc
1921 cttcaagccg gacttttcac acatcaagct acagcttgca cctcagggcg gctttgacaa
1981 gaatggcaac accccacatg ggaaaggagt gatgaagacc ctcactaccg gttctctgat
2041 tgcccgcgca tcaggcctac tgcatgagag gatggatgaa tttgaactcc aaggtcccac
2101 aatcaccacc ttcaatttcg accggaacag agtcacagca ttcaggcaat tggctgcaga
2161 aaacaagtat ggattggtgg ataccatgaa agttggcaat caactaaaag gagtgaaaac
2221 catggaagaa ctcaaacaag caatcaggag tgtgaccatc aagaggtgcc ggatcatcta
2281 cggtggctcc acgtatgacc ttgaatctga cggcaagggc aaagttttgg tggagaaagt
2341 caagaacacc tctgtacaga ccaacaacga gttggccggg gccctgcacc atctcaaaca
2401 tgcccgaatc aggtactatg tcaaatgtgt gcaagaagca gtctattcca tcatacaaat
2461 tgccggcgct gcgtttgtta ccacgcgcat tgcacgccgc atgaacatac aagaactatg
2521 gtcgaagcca caattagatc aaaatgaatc agagactaaa ggagaggccc ccaagtcaga
2581 agatgacgag ttcatcatat cttctaagga catcaaggag gagggaaaga agggcaaaaa
2641 caaaactggc cgtggcaaga aacacactgc attttccagc aagggcttga gcgatgagga
2701 gtacgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta
2761 tcttcaagac agagacaggt actatgagga gctcgccatc gccaaggcta cggaagaaga
2821 tttctgtgaa gaggaggaga tcaaaatccg tcagagaatt ttccgtccca ccaggaagca
2881 aagaaaggaa gagagggcca cattagggct agtaacaggt tcagaaatca gaaaaagaaa
2941 ccctgatgac ttcaaaccca aagggaagct gtgggccgat gacaacagaa gtgttgacta
3001 caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg tgagctttgg
3061 ttctggctgg ggcttctggg tatcaccaag cttgttcata acatcaactc atgtaatccc
3121 cgcaggcata acagaagcat ttggagtccc catcaaacaa attcagatcc acaaatcagg
3181 tgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag gaatgatctt
3241 agaagaaggt gcgcctgaag gcaccgtggc gactgtgctc atcaaacgcc ccaccggaga
3301 gctcatgcct cttgcagcca gaatgggaac acacgcaacc atgaaaattc aaggccgcat
3361 ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa tggatttggg
3421 aacaactcct ggtgactgtg gttgtcctta catctataaa aggggcaatg attatatagt
3481 cattggggtg cacactgcag cagcccgtgg tggaaacacc gtcatctgtg ccacacaggg
3541 aagtgagggt gaggcaactc tcgagggtgg agatgacaaa gggacatact gtggggcacc
3601 cattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt ggaggtcatc
3661 gaacacgccc cttccaccag ggacatatga acctgcctat ctcggtggcc gtgatccgcg
3721 tgttaagggt gggccctcct tgcagcaggt gatgagagac cagttgaagc cattcactga
3781 acccaggggc aaacctccaa gaccaagtgt attggaagca gccaaacaaa ccattattaa
3841 tgtcctcgaa caaaccctgg accctccaca aaaatggaca tacgcacagg cgtgtgcctc
3901 acttgacaaa accacctcca gcgggcatcc ccatcacgtc cgaaagaatg aattctggaa
3961 tggtgaaacc ttcactggta aattggcaga tcaagcatca aaggcaaacc taatgtttga
4021 ggaagggaaa catatgacac cagtgtatac agcagcactc aaggacgagc tagtcaagac
4081 tgagaaaatc tatggaaaga tcaagaagag actgctctgg ggctctgact tgtccaccat
4141 gatccggtgc gctaggtcat ttggtgggct catggacgag atgaaggcac actgcatatc
4201 actcccagta cgagttggca tgaatatgaa tgaagatggt ccaataatat ttgagaagca
4261 ttccagatac aaataccact atgatgcaga ctactctcgt tgggattcaa cacaacagag
4321 ggcagtacta gcggcagcct tggaaatcat ggttagattc tctgcagaac cacaattggc
4381 acaagtagtc gctgaggatc tgctggcccc tagtgtagta gatgtaggag acttcaaaat
4441 cacaataaat gaagggctcc catctggtgt gccgtgcact tctcaatgga actctatcgc
4501 acactggctg ctaactctct gcgccttgtc tgaagtcacc aaactgtccc ctgacatcat
4561 acaggcaaat tccatgttct cattttacgg tgatgacgag attgtcagca ccgacataaa
4621 attggaccct gatcagttaa ccgccaaatt gaaggagtac ggcctgaaac caacccgccc
4681 agacaagacc gagggacccc tgatcatcag tgaagatttg aacggactca ctttcctccg
4741 aaggacggtg actcgtgacc cagctggctg gtttgggaga ctggaccaaa gctcaatttt
4801 gaggcagatg tactggacta gaggaccaaa tcatgaagac cccagtgaga caatgatacc
4861 ccattctcaa agacccatac agctcatggc actgcttggt gaagcctctc ttcacggacc
4921 ctctttctac agtaaaatca gtaaattggt cataactgaa cttaaagaag gtgggatgga
4981 cttttacgtg ccaaggcagg aacccatgtt caggtggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgttccatc taatgatggt gccgccggcc tcgtcccaga gatcaacaat gaggctatgg
5161 cgctggagcc agtggcgggt gcagcgatag cagcacccct cactggtcag caaaatataa
5221 ttgatccctg gattatgaat aattttgtgc aagcacctgg tggtgagttt acagtgtccc
5281 ctagaaattc ccctggtgaa gtccttctta atttggaact gggcccagaa ataaatccct
5341 atttggccca tcttgctaga atgtataatg gctatgcagg tggatttgaa gtgcaggtgg
5401 tcctagctgg aaatgcgttt acagcaggaa agataatctt tgcagccatc ccccccaatt
5461 ttccagttga caatttaagt gcagcacaga tcacaatgtg cccacatgtg atcgtggatg
5521 tcaggcagtt ggaaccagtc aacctcccga tgcctgacgt tcgcaacaac ttctttcatt
5581 ataaccaagg gtctgactcg aggttacgcc taattgcaat gctgtacaca cctcttaggg
5641 cgaacaattc tggggatgat gtttttactg tgtcttgtag agtgttaact agacctagtc
5701 ctgatttctc gttcaacttc cttgtgccac ctactgtgga gtcaaagaca aaaccctttt
5761 ccctccctat cctgactatc tctgagatgt ccaattctag gttcccagta ccaattgatt
5821 ccctacatac cagccctact gaaaatattg ttgttcagtg ccaaaatggg cgcgtcaccc
5881 ttgatggtga actgatgggc accacccaac tcttgcctag ccaaatctgt gctttcaggg
5941 gcgttctcac cagatcaaca agcagaacca gtgaccaggc cgatacagca acccctagat
6001 tgtttaatta ttattggcat atacaattgg ataatctaaa tggaaccccc tatgatcctg
6061 cagaagacat accaggcccc ttagggacac cagatttccg tggcaaagtc tttggcgtgg
6121 ccagccagag aaatcctgat gccacgacta gggcgcatga ggcaaagata gacaccacat
6181 ctggccgctt caccccaaag ctaggttcat tagagatatc cactgagtct agtgattttg
6241 accaaaacca accgacaaga ttcaccccag ttggcattgg agttgaccat gaggcagact
6301 ttcaacaatg gaccctaccc gactatgctg gtcagttcac acacaacatg aacttagccc
6361 cagctgttgc ccccaacttc cctggtgagc agctcctttt cttccgctca catttgccat
6421 cttctggtgg gcgatccaac gggattctag actgcctggt cccccaagaa tgggtgcagc
6481 acttctacca agagtcagcc ccctctcagt ctcaagtggc cctggttagg tatgttaatc
6541 ctgacactgg cagagtgtta tttgaggcta agctacataa actaggtttc atgactatag
6601 ccaagaatgg tgattctcca ataactgtcc ctccaaatgg atactttagg tttgaatctt
6661 gggtgaaccc cttttacaca cttgccccca tgggaactgg gaatgggcgc agaaggattc
6721 aataatggct ggagctttta tagcaggatt ggctggtgac atgctcacaa atactgtagg
6781 atctttagtt aatgcaggag ctaatgctat taatcaaaca attgattttg aaaataataa
6841 atatttgcaa aatgcttctt ttaatcatga taaggagatg ttgaatgcac aagttgaggc
6901 aacaaagaag ttacaggctg acatgattgc tatcaaacaa ggggctttga ccgctggcgg
6961 cttctcccct actgatgcag cccgtggggc aattaacgcc cccatgacaa aagtcctaga
7021 ttggaatgga acgagatact gggcaccagg tgccacctcc acgacctcga tgtcgggtgg
7081 ctttacacat caaactgtgc acagacccac accaaacttt aaaacgaacc aggctcccaa
7141 atccacaccc agcagtggat ctacagtgag gtcaaactca acccaaatca ctagcctgag
7201 ctcacactcg tccgggtcgt ctcgatccag cgggtctaca gtcatcagct caataccatc
7261 ctctaacagg actagggact gggtcaacca acaaaatttt aatttggaac cacacatgcc
7321 tggatctctt aggacagctt ttgtctctcc accatctagt acagcctcta gctcaggcac
7381 agtctcaact gtgcccaaaa atgttttgga ctcctggaca tctgcgttca acacgcgcag
7441 acagccgcta tttgcacacc ttcgtagaag gggggagtca aatgtttagt gaaaagatta
7501 ttttaaattt ggtttaaatt aggtttaatt tggaatcttt taaaaaaaaa aa
//