Typing tool
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Typing tool
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Complete norovirus genomes
| LC769712 | GII.3 | |
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| GII.P16 |
ORF1: 1..5099
ORF2: 5080..6726
ORF3: 6726..7490
LOCUS LC769712 7536 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2018/GII.3[P16]/NICED-RV-987, nearly complete
genome.
ACCESSION LC769712
VERSION LC769712.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2018/GII.3[P16]/NICED-RV-987"
/isolate="Hu/IN/2018/GII.3[P16]/NICED-RV-987"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2018-11-26"
/note="genotype: GII.3[P16]"
gene <1..5099
/gene="POL"
CDS <1..5099
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74180.1"
/translation="KMASNDATVAVACNNNNDKERSSGEGLFTNMSSTLKKALGARPK
QPAPRDEPQKPLRPSTPELVKRIPPPPPNGEEGEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMKVGNQLKGVKT
MEELKQAIRSVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKGEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQVVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPDQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5080..6726
/gene="VP1"
CDS 5080..6726
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74181.1"
/translation="MKMASNDAVPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6726..7490
/gene="VP2"
CDS 6726..7490
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74182.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tgaagatggc gtctaacgac gctaccgttg ccgttgcttg caacaacaac aacgacaagg
61 aaagatcttc aggtgaaggc ttattcacaa atatgtcttc caccttaaag aaagccctcg
121 gggctaggcc caaacagcct gccccgagag acgaaccaca aaagccccta aggccatcaa
181 ctcccgagtt ggtcaagagg ataccccctc ctccacctaa tggcgaagaa ggagaagaac
241 cagtcattag gtacgaggtt aagagtggga tctctggcct gcccgagctt acaacagtcc
301 cccaaccgga cgtggccaac acggcattta gtgttccacc actgagcttg agagaaaaca
361 gggaggccaa ggaaccgtta acaggggcaa tattagagat gtgggatgga gagatatacc
421 actatggcct gtacgtggag aaaggcctag tgttgggtgt gcacaaacca cctgcagcca
481 taagcatggc aagagtggag ctggcgccgc tgtcattgta ctggcgtgtg gtgtacactc
541 cccaatacct catctcccct gaaactctca ggaggctcaa cggagaggcg ttcccttaca
601 ccgcctttga caacaactgc tacgcctttt gctgctgggt attagacctc aatgactcat
661 ggcttagcag gaggatggtg caaagaacaa cgggcttctt caggccttac caagagtgga
721 acagaaaacc cctgcctacc atggatgact ccaaaattaa gaaggtagca aatatattcc
781 tatgttcact gtccacatta tttaccagac ccataaaaga cctcatagga aaaattagac
841 cattaaacat attgaatatc ctagcaacgt gtgactggac gtttgccgga atagtggagt
901 ctctgatatt acttgctgaa ctcttcggag ttttctggac acccccagat gtgtctgcta
961 tgatcgctcc cttactcggg gactacgagt tgcaagggcc ggaagacctc gccgttgagc
1021 tcgtacctgt agtaatggga gggattggtt tggtgttggg attcaccaaa gagaaaattg
1081 gcaaaatgtt gtcatcagca gcatcaacac tcagggcttg caaagatctt ggtgcctatg
1141 gcttagagat actcaaattg gtcatgaagt ggttcttccc aaagaaagag gaggccaatg
1201 agctagccat ggtgagggcc atagaggatg ccgtactaga tcttgaggca atagaaaata
1261 accacatgac aaccctgtta aaagacaaag acagcttagc aacatacatg aaaacactgg
1321 acatggagga ggagaaagcc agaaggttgt ccacaaaatc tgcatcccct gacatagttg
1381 ggacaatcaa cgccctgctg gctcgaatag cagcggccag gtcattagtc cacagggcca
1441 aagaagagct atctagcagg ataagaccag tagttgttat gatatctggc aaaccaggaa
1501 taggcaaaac tcatctggcc agggaggtgg caagaaaggt agcatccact ctcacagggg
1561 atcaaagagt cggactcata ccaaggaacg gcgtggacca ttgggatgca tacaaaggtg
1621 agagagtcgt gctgtgggac gactatggca tgagtaaccc cattcatgat gctcttcgca
1681 tacaagaatt agctgatacg tgtcccctca ccttaaattg tgacagaatt gaaaataagg
1741 gtaaagtctt tgacagtgaa gtcataataa ttacaacaaa ccttgccaat ccagccccac
1801 ttgattatgt caactttgag gcctgttcca ggagaattga tttcctggtg tacgctgagg
1861 caccagaagt agaaaaggca aaacgggact ttcctggtca gccagacatg tggaaggacg
1921 ccttcaagcc ggacttttca cacatcaagc tacagcttgc acctcagggc ggctttgaca
1981 agaatggcaa caccccacat gggaaaggag tgatgaagac cctcactacc ggttctctga
2041 ttgcccgcgc atcaggccta ctgcatgaga ggatggatga atttgaactc caaggtccca
2101 caatcaccac cttcaatttc gaccggaaca gagtcacagc attcaggcaa ttggctgcag
2161 aaaacaagta tggattggtg gataccatga aagttggcaa tcaactaaaa ggagtgaaaa
2221 ccatggaaga actcaaacaa gcaatcagga gtgtgaccat caagaggtgc cggatcatct
2281 acggtggctc cacgtatgac cttgaatctg acggcaaggg caaagttttg gtggagaaag
2341 tcaagaacac ctctgtacag accaacaacg agttggccgg ggccctgcac catctcaaac
2401 atgcccgaat caggtactat gtcaaatgtg tgcaagaagc agtctattcc atcatacaaa
2461 ttgccggcgc tgcgtttgtt accacgcgca ttgcacgccg catgaacata caagaactat
2521 ggtcgaagcc acaattagat caaaatgaat cagagactaa aggagaggcc cccaagtcag
2581 aagatgacga gttcatcata tcttctaagg acatcaagga ggagggaaag aagggcaaaa
2641 acaaaactgg ccgtggcaag aaacacactg cattttccag caagggcttg agcgatgagg
2701 agtacgacga gtacaagagg ataagagaag agagaaatgg gaagtactct atagaggagt
2761 atcttcaaga cagagacagg tactatgagg agctcgccat cgccaaggct acggaagaag
2821 atttctgtga agaggaggag atcaaaatcc gtcagagaat tttccgtccc accaggaagc
2881 aaagaaagga agagagggcc acattagggc tagtaacagg ttcagaaatc agaaaaagaa
2941 accctgatga cttcaaaccc aaagggaagc tgtgggccga tgacaacaga agtgttgact
3001 acaatgagaa actggacttt gaggcccccc caagcatatg gtctaggatt gtgagctttg
3061 gttctggctg gggcttctgg gtatcaccaa gcttgttcat aacatcaact catgtaatcc
3121 ccgcaggcat aacagaagca tttggagtcc ccatcaaaca aattcagatc cacaaatcag
3181 gtgaattttg ccgattcaga ttcccaaaac caattagacc agatgtgaca ggaatgatct
3241 tagaagaagg tgcgcctgaa ggcaccgtgg cgactgtgct catcaaacgc cccaccggag
3301 agctcatgcc tcttgcagcc agaatgggaa cacacgcaac catgaaaatt caaggccgca
3361 tggttggcgg acagatgggt atgttgctca ctggatcaaa tgctaaagga atggatttgg
3421 gaacaactcc tggtgactgt ggttgtcctt acatctataa aaggggcaat gattatatag
3481 tcattggggt gcacactgca gcagcccgtg gtggaaacac cgtcatctgt gccacacagg
3541 gaagtgaggg tgaggcaact ctcgagggtg gagatgacaa agggacatac tgtggggcac
3601 ccattctagg ccctgggggt gcaccaaaat tgagcaccaa aaccaaattt tggaggtcat
3661 cgaacacgcc ccttccacca gggacatatg aacctgccta tctcggtggc cgtgatccgc
3721 gtgttaaggg tgggccctcc ttgcagcagg tgatgagaga ccagttgaag ccattcactg
3781 aacccagggg caaacctcca agaccaagtg tattggaagc agccaaacaa accattatta
3841 atgtcctcga acaaaccctg gaccctccac aaaaatggac atacgcacag gcgtgtgcct
3901 cacttgacaa aaccacctcc agcgggcatc cccatcacgt ccgaaagaat gaattctgga
3961 atggtgaaac cttcactggt aaattggcag atcaagcatc aaaggcaaac ctaatgtttg
4021 aggaagggaa acatatgaca ccagtgtata cagcagcact caaggacgag ctagtcaaga
4081 ctgagaaaat ctatggaaag atcaagaaga gactgctctg gggctctgac ttgtccacca
4141 tgatccggtg cgctaggtca tttggtgggc tcatggacga gatgaaggca cactgcatat
4201 cactcccagt acgagttggc atgaatatga atgaagatgg tccaataata tttgagaagc
4261 attccagata caaataccac tatgatgcag actactctcg ttgggattca acacaacaga
4321 gggcagtact agcggcagcc ttggaaatca tggttagatt ctctgcagaa ccacaattgg
4381 cacaagtagt cgctgaggat ctgctggccc ctagtgtagt agatgtagga gacttcaaaa
4441 tcacaataaa tgaagggctc ccatctggtg tgccgtgcac ttctcaatgg aactctatcg
4501 cacactggct gctaactctc tgcgccttgt ctgaagtcac caaactgtcc cctgacatca
4561 tacaggcaaa ttccatgttc tcattttacg gtgatgacga gattgtcagc accgacataa
4621 aattggaccc tgatcagtta accgccaaat tgaaggagta cggcctgaaa ccaacccgcc
4681 cagacaagac cgagggaccc ctgatcatca gtgaagattt gaacggactc actttcctcc
4741 gaaggacggt gactcgtgac ccagctggct ggtttgggag actggaccaa agctcaattt
4801 tgaggcagat gtactggact agaggaccaa atcatgaaga ccccagtgag acaatgatac
4861 cccattctca aagacccata cagctcatgg cactgcttgg tgaagcctct cttcacggac
4921 cctctttcta cagtaaaatc agtaaattgg tcataactga acttaaagaa ggtgggatgg
4981 acttttacgt gccaaggcag gaacccatgt tcaggtggat gaggttttct gacttgagca
5041 cgtgggaggg cgatcgcaat ctggctccca attttgtgaa tgaagatggc gtcgaatgac
5101 gccgttccat ctaatgatgg tgccgccggc ctcgtcccag agatcaacaa tgaggcaatg
5161 gcgctggagc cagtggcggg tgcagcgata gcagcacccc tcactggtca gcaaaatata
5221 attgatccct ggattatgaa taattttgtg caagcacctg gtggtgagtt tacagtgtcc
5281 cctagaaatt cccctggtga agtccttctt aatttggaac tgggcccaga aataaatccc
5341 tatttggccc atcttgctag aatgtataat ggctatgcag gtggatttga agtgcaggtg
5401 gtcctagctg gaaatgcgtt tacagcagga aagataatct ttgcagccat cccccccaat
5461 tttccagttg acaatttaag tgcagcacag atcacaatgt gcccacatgt gatcgtggat
5521 gtcaggcagt tggaaccagt caacctcccg atgcctgacg ttcgcaacaa cttctttcat
5581 tataaccaag ggtctgactc gaggttacgc ctaattgcaa tgctgtacac acctcttagg
5641 gcgaacaatt ctggggatga tgtttttact gtgtcttgta gagtgttaac tagacctagt
5701 cctgatttct cgttcaactt ccttgtgcca cctactgtgg agtcaaagac aaaacccttt
5761 tccctcccta tcctgactat ctctgagatg tccaattcta ggttcccagt accaattgat
5821 tccctacata ccagccctac tgaaaatatt gttgttcagt gccaaaatgg gcgcgtcacc
5881 cttgatggtg aactgatggg caccacccaa ctcttgccta gccaaatctg tgctttcagg
5941 ggcgttctca ccagatcaac aagcagaacc agtgaccagg ccgatacagc aacccctaga
6001 ttgtttaatt attattggca tatacaattg gataatctaa atggaacccc ctatgatcct
6061 gcagaagaca taccaggccc cttagggaca ccagatttcc gtggcaaagt ctttggcgtg
6121 gccagccaga gaaatcctga tgccacgact agggcgcatg aggcaaagat agacaccaca
6181 tctggccgct tcaccccaaa gctaggttca ttagagatat ccactgagtc tagtgatttt
6241 gaccaaaacc aaccgacaag attcacccca gttggcattg gagttgacca tgaggcagac
6301 tttcaacaat ggaccctacc cgactatgct ggtcagttca cacacaacat gaacttagcc
6361 ccagctgttg cccccaactt ccctggtgag cagctccttt tcttccgctc acatttgcca
6421 tcttctggtg ggcgatccaa cgggattcta gactgcctgg tcccccaaga atgggtgcag
6481 cacttctacc aagagtcagc cccctctcag tctcaagtgg ccctggttag gtatgttaat
6541 cctgacactg gcagagtgtt atttgaggct aagctacata aactaggttt catgactata
6601 gccaagaatg gtgattctcc aataactgtc cctccaaatg gatactttag gtttgaatct
6661 tgggtgaacc ccttttacac acttgccccc atgggaactg ggaatgggcg cagaaggatt
6721 caataatggc tggagctttt atagcaggat tggctggtga catgctcaca aatactgtag
6781 gatctttagt taatgcagga gctaatgcta ttaatcaaac aattgatttt gaaaataata
6841 aatatttgca aaatgcttct tttaatcatg ataaggagat gttgaatgca caagttgagg
6901 caacaaagaa gttacaggct gacatgattg ctatcaaaca aggggctttg accgctggcg
6961 gcttctcccc tactgatgca gcccgtgggg caattaacgc ccccatgaca aaagtcctag
7021 attggaatgg aacgagatac tgggcaccag gtgccacctc cacgacctcg atgtcgggtg
7081 gctttacaca tcaaactgtg cacagaccca caccaaactt taaaacgaac caggctccca
7141 aatccacacc cagcagtgga tctacagtga ggtcaaactc aacccaaatc actagcctga
7201 gctcacactc gtccgggtcg tctcgatcca gcgggtctac agtcatcagc tcaataccat
7261 cctctaacag gactagggac tgggtcaacc aacaaaattt taatttggaa ccacacatgc
7321 ctggatctct taggacagct tttgtctctc caccatctag tacagcctct agctcaggca
7381 cagtctcaac tgtgcccaaa aatgttttgg actcctggac atctgcgttc aacacgcgca
7441 gacagccgct atttgcacac cttcgtagaa ggggggagtc aaatgtttag tgaaaagatt
7501 attttaaatt tggtttaaat taggtttaat ttggaa
//