Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC769711 | GI.3 | |
|
|---|---|---|---|
| GI.P13 |
ORF1: 3..5411
ORF2: 5395..7029
ORF3: 7029..7676
LOCUS LC769711 7815 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GI Hu/IN/2018/GI.3[P13]/NICED-RV-791, nearly complete
genome.
ACCESSION LC769711
VERSION LC769711.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7815)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7815
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Norovirus GI/Hu/IN/2018/GI.3[P13]/NICED-RV-791"
/isolate="Hu/IN/2018/GI.3[P13]/NICED-RV-791"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="India: Kolkata"
/collection_date="2018-06-18"
/note="genotype: GI.3[P13]"
gene 3..5411
/gene="POL"
CDS 3..5411
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74177.1"
/translation="MMMASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPSRQTNNDSAPKAQRDRPPRTASEVKRALGWDTEPE
HQESTARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSDLPSTFERAAPSSATDMQQPVS
WSSSDGVNLGINKLTTVRGPHWNMCPLPPLDARNSGPAKEPLIGDMIEFYEGHIFHYA
IYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYEQLKELENEPWP
YAAITNNCYEFCCKVMALDDTWLQRKLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRD
AVLSAINGLVSQPFKNILSKIKPLNVLSLLSNCDWTFMGVVELVVLLAELFDVFWTPP
DISSFIASLLPDFHLQGPEDLARDLVPIILGGIGLAIGFTRDKITKVMKSAVDGLRSA
TQLGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKA
YMNVLDCEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVI
MMCGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGM
SKITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPV
CRRVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDNQGNTPF
GKGVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTSLARANGLGFIS
MATLGKKLRNVKTMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVIIKEKQAPSSS
QHQAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQ
PILEGKHKEHNCRVHRAAAAGRGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEG
KNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEE
LAEVQAGGDGGIGETEAEIRHRVFYKSKTGMRKQRQEERRQLGLVSGTEIRKRKPIDW
TPPKNDWSEDTRAVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPG
AKEIFGENLNNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTILIKRDSGE
LLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDW
VVCGVHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTK
FWKSNPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEA
AVETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNSFVRELGDQ
AAHANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVVRAARAFGP
FCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESF
NIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYT
LCALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDPNRLTQVLREYGLKPTRPDKT
DGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPH
TQRKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEVYIPGWQAMFRWMRFHDLS
LWTGDRDLLPDYVNDDGV"
gene 5395..7029
/gene="VP1"
CDS 5395..7029
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74178.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA
TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDILFDLQLGPQLNPFLAHLAQMYNG
WVGNMRVKVMLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI
PLEDVRNVLFHTNDNKPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFSFL
FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIRSMTVSRDQNQVIQFQNGRVTLDGQ
LQGTTPTSVSQLCKIRGTNYHAQGGSGINLTELNGEPYHAFESPAPIGFPDLGNCDWH
LTATPTQAFNDGSKVVHMSVSQGAAFAPHLGTIHYTTNDTDYNPPTSIICTLDWLSQT
AGQNNVDPWQIPSYGSTLTEAAQLAPPIYPPGFGETLVFFLSDFPISNGKNGLSVPCT
LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNGSGGGPQT
LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS"
gene 7029..7676
/gene="VP2"
CDS 7029..7676
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74179.1"
/translation="MAQAMLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG
TRIAAPLSTATTLRSGGFMSIPVMYRGAKTEQQKSTGFSNPNYETGSSVSRTSQWVSS
QNSMRSSVAPFHPNALRTTWVTPPGSSSTSTISSASSIPRFFNTERLPLFANNKR"
ORIGIN
1 gaatgatgat ggcgtctaac gacgctattg ccgttgctga tgtcagcaat aacaatgcta
61 acaccaacaa tgaaaatatt ggatctcgcc tcatggcgaa gatccgtggg cgtataggcc
121 cacaacgtgg tgaaacaacc acaaagatca aagatgccaa catggcgctt gacctcctac
181 gccggtcgca aacaccatct ccaagtcggc aaaccaataa tgacagtgcc cctaaggcac
241 aaagagaccg tcccccacga actgcttcag aagtaaagag ggcactggga tgggatactg
301 aaccagaaca tcaggagagt acggctaggg catggtgtga cctctcaaaa gaggagaagg
361 aagaaataat gcgcaacaac gagaagctct ttgatgctgg aggtgtcact ccatcagacc
421 tgcctagcac atttgagagg gctgccccaa gtagcgccac tgacatgcaa caaccagtgt
481 catggtcttc tagtgatggg gtcaatcttg gcatcaataa attgaccact gtccgtggcc
541 cacattggaa catgtgtccc ctaccaccgc tggatgcacg taacagtggt cctgccaagg
601 aaccccttat aggggacatg attgagttct acgaaggtca catatttcac tatgccattt
661 acattggaca aggtaaaacc attggagtcc actcaccaca ggccgctttc tccataccta
721 ggataaccat ccacccgtta gtggcctggt ggcgtgtgtg ttacgtcccc aacaaccaac
781 aacgcctcac ctacgaacaa cttaaggaat tggaaaatga accatggccc tatgccgcaa
841 tcaccaacaa ctgttatgag ttttgttgta aggtgatggc gcttgatgac acctggctcc
901 aaagaaaact ggtcactagt ggaaagttca accatcctac acaggactgg tcacaggaca
961 ccccagattt ccatcaggac tcgaagttag agatggtgag agacgccgtt ttgtcagcca
1021 tcaacggcct tgtgtcacaa ccttttaaga atatcctttc aaaaattaaa ccactaaatg
1081 tgctcagcct cttatcaaat tgtgactgga cctttatggg cgttgtggaa ctagttgtac
1141 tcctagcaga gctgttcgac gtgttctgga ccccaccgga catttcgagc tttattgcat
1201 ctttattgcc tgatttccac ctacaaggcc cagaagacct agccagagac ctagtcccta
1261 ttatattagg tggcataggt ctggcaattg gtttcacaag agacaaaata acaaaagtga
1321 tgaagagtgc cgttgatggg ctacggtcag caacacagct tgggcaatat gggttagaga
1381 tattctcaat cattaagaaa tacttctttg gaggggacca aacagaaaag accctgcggg
1441 gcatcgaaga tgcagtgata gacatggaag tattgtccag cactaatgtg acacaattag
1501 tcaaagataa aaagttagcc aaagcttaca tgaatgtgct ggactgtgag gaagaaaaag
1561 cgaggaagct ctcagtccgt agtgctgacc cacacatagt aacctctgtc aacaacctga
1621 tatcacgcat ttccatggca agatcagctc tagctaaagc ccaagctgaa atgacatccc
1681 gcccacgacc agtggttata atgatgtgtg gtcctcctgg catcggtaag accaaggctg
1741 ccgaacacct agccggccga ctagccgctg aaatcaggcc tggaggtaag gttggccttg
1801 taccccggga atctatagac cactgggatg gatatcatgg tgaggatgtt ttgctctggg
1861 atgactatgg catgtcaaaa ataacagagg attgcaacaa gttgcaggct atagccgaca
1921 ctgcaccact gtcgctcaat tgtgacagga tagagaataa aggtatgcaa ttctcttctg
1981 atgcaataat cataacaacc aatgcccctg gcccagcccc agtggacttt gtcaacctag
2041 gccccgtgtg cagacgtgtg gactttttag tttactgctc cgcacccgag attgaacaga
2101 cgcggagggc tcacccaggt gacaccaatg ccatcaagga tttgtttaag aaggatttct
2161 cacacctaaa aatggaacta gccccacagg gcggttttga caatcagggc aacacacctt
2221 ttggaaaggg tgtcatgaaa accacaaccc ttaacagact gctgatacag gccacagcgc
2281 tagccatgga acggcaagat gaattccaac ttcagggggc tgtctacaac ttcgacgagg
2341 acagagtggc cgccttcact agtctggctc gcgctaatgg cctgggattc ataagtatgg
2401 caacattggg caagaaacta aggaatgtta agaccatgga aggcttgcgc aacgcactac
2461 tgggctacaa gattggagag tgtgatataa tctggaacac tagagtgtac tcagtcaaga
2521 gtgacgggag caatgtcata attaaagaaa aacaagcacc atcctcatcc caacaccaag
2581 ctatttctac agccacctta gcactgtcca gactacgggc tgccagggct ctcgcatacg
2641 cctcttgtct gcaaagtgca gtgttgtcaa tacttcaggt ggccggctct gctgtagtgg
2701 tgagtagggc cgtaaaacgc atgtttggca cacgcaccga acagcccatt ctggaaggca
2761 agcacaaaga acacaactgc agagtgcacc gtgcagcggc tgctggccgt ggtcctattg
2821 gccatgatgg aatcattgaa cgttatggcc tgtgtgagag tgagcaggaa ggtgaagatg
2881 atcagactgt agagctgcct actgctgaca aagaaggcaa aaacaaaggc aaaaccaaaa
2941 agggccgtgg gcggaagtcc aatttcaatg cattctctag gcgtgggctc agtgatgaag
3001 aatatgagga gtacaagaaa gtaagagaag agaagggtgg caactatagc atacaagaat
3061 accttgagga ccgccagcgg tacgaagaag aactcgctga ggtgcaagct ggtggagacg
3121 gtgggatcgg tgaaactgaa gcagaaatcc gccatcgggt cttctacaaa tcaaaaactg
3181 gcatgagaaa acaacggcaa gaggaacgcc gccagttggg ccttgtgagc ggtactgaaa
3241 tccgcaaacg taagcccata gattggaccc cccccaaaaa tgactggtca gaggacacta
3301 gagctgtcaa ttatgatgaa cacattagct ttgaagcccc tccctcaatt tggagcagag
3361 tagttaaatt tggcagtggc tggggttttt gggtgagctc aacagtgttc atcaccacaa
3421 cccatgttat accacctggt gctaaggaaa tctttggtga gaacctcaac aatattgcca
3481 tccacagggt tggtgagttc acccagttcc gtttctcaaa gaaaatgagg cctgacctct
3541 ctggtatggt cctggaagag ggttgccctg aaggcacagt atgcaccata ctgataaaaa
3601 gagactctgg agagctgctg ccactggctg tacgcatggg agcagtggcc tcaatgaaga
3661 ttcagggaaa actcatgcat ggacagtcag ggatgttgct cactggtgct aatgctaagg
3721 gcatggacct tgggaccata cctggggact gtggagcacc ttacgtccac aagagaggga
3781 atgactgggt ggtctgtggg gtacatgcag cagccacgaa atcaggcaac accgtggtgt
3841 gcgccataca aggcggtgag ggtgaagcca cgttggaggg tggcggacaa aataaaggtc
3901 actatgcagg acacccaata ctaagatatg gaaatggccc ttcattgtca accaaaacaa
3961 aattctggaa atcaaaccct cagcctctac cccccggcac atatgaacca gcctaccttg
4021 gtggcaggga ccccagagtc gaaggtggtc catctttgca gcaagtgttg cgagaccagc
4081 taaagccatt cgctgaacct cgtggcaggc tgcccgaggc aggattgctg gaagctgcgg
4141 ttgagaccgt caccaatgca atcgaacagg tcatggatac accagtggca tggagctaca
4201 gcgatgcctg catgtcccta gacaaaacaa ccagttctgg ttacccccac cacaagagaa
4261 agaatgatga ttggaatgga aactcgtttg tgagagaact gggagatcaa gcagcacacg
4321 ctaatagcat gtatgaactt ggtaagtcca tgaagccagt gtacacagca gcactcaagg
4381 atgaactcgt caagccagac aaggtgtaca acaaaattaa gaaaaggcta ctctggggag
4441 cagacctcgg caccgtcgtc cgtgccgcca gagcctttgg accattttgc gaggccataa
4501 aaccccatgt gatcaaatta cccatcaaag tgggcatgaa tgccatagag gatggtcctt
4561 tgatttatgc agaacactcc aagtataagt atcattttga tgctgattac acagcatggg
4621 attcaacaca aaacagagag atcatgatgg agtcctttaa tatcatgtgt aaactcactg
4681 ctaacccttc cctggccgca gtagtggcgc aggatctgct ttccccttct gaaatggatg
4741 tcggtgatta tgtgatcagt gtcaaagatg gcctaccatc tggctttcca tgcacctcac
4801 aagtgaacag catcaatcat tggatctaca cgctgtgtgc cctgtcagaa gtcactggct
4861 tagcccctga tgtaatacaa tcacaatctt atttttcatt ttatggtgat gatgagatag
4921 tctcaacaga tattgaattt gacccaaaca ggttaacaca agtgctaaga gagtatggct
4981 taaaacccac aagacctgac aagactgatg gcccaatcat tgtgagacag caagttgatg
5041 gcttggtttt cctccggcgc accatctcga aagatgccat tggataccag ggacgcctcg
5101 accgaaattc cattgagaga cagctctggt ggactcgtgg gcccaaccat gatgatccat
5161 ttgaaacctt agtcccacac acacagagaa aggtccagct gatatcccta ctaggtgaag
5221 ctgcactcca tggtgagaaa ttctacagaa agatagccag tagggtgatc caggaagtca
5281 aagagggggg gttggaagtc tacatccctg ggtggcaagc catgttccgc tggatgcgat
5341 tccatgattt gagcttatgg acaggagacc gcgatctctt gcccgattat gtaaatgatg
5401 atggcgtcta aggacgcccc aacaaacatg gatggcacca gtggtgccgg tcagctggta
5461 ccagaggcaa atacagctga acctatatca atggatccag tggctggagc cgcaacagcg
5521 gtcgctactg ctggacaaat taatatgatt gacccctgga taatgagtaa ttttgtgcag
5581 gccccgcaag gggaattcac tgtctcacca aataacaccc ctggagatat tttgtttgat
5641 ttgcaattag gaccccaatt aaatcccttc ctagcccatt tagcccagat gtataatggt
5701 tgggtaggca atatgcgtgt gaaggtgatg cttgctggca acgcttttac cgcggggaaa
5761 ataataatta gctgcatacc cccaggcttc acttcccaaa acatttccat tgctcaaatg
5821 acaatgttcc ctcacgttat tgctgacgtg agggtcctag aacctataga gatacccctt
5881 gaggatgtga ggaatgtgct gtttcacacc aatgacaata aaccaacaat gaggctcgta
5941 tgcatgttgt acacccccct gcgagccaat ggcagttctt ctggtacgga tccttttgtc
6001 atagctggca gggtcctcac ctgtccagat tcaactttta gcttcctttt cttagtaccc
6061 cccaatgttg agcaaaagac taggcctttt agtgtcccca atataccttt gaatacactg
6121 tcaaactcaa gggtgccatc attgatcagg tctatgactg tctctagaga tcagaatcaa
6181 gtaattcagt tccaaaatgg tagggttaca ttggatggtc aactgcaggg aaccacaccc
6241 acgtcagtga gccaattgtg taaaattaga ggcaccaatt atcatgcaca agggggtagt
6301 gggataaatt tgacagagct gaatggtgaa ccttaccatg cctttgagag tcccgctcca
6361 atagggtttc cagatcttgg caattgtgat tggcatctca ctgcaacccc cacgcaggct
6421 ttcaacgacg gatcgaaggt cgtgcacatg tcagtctccc aaggcgcagc ctttgcccca
6481 cacttaggca ccatacatta caccaccaat gacactgatt ataacccccc caccagcata
6541 atttgtacac tagattggct gtctcaaact gctggtcaga acaatgtcga cccctggcag
6601 ataccaagtt atggatctac tttaaccgag gctgcccagt tggcgcctcc tatttacccc
6661 cctgggtttg gtgaaacatt ggttttcttt ctatcagatt tccctatttc caatggtaag
6721 aatggactta gtgtgccttg tacccttcca caagaatttg tcacccactt tgtgaatgag
6781 caggccccaa ttagaggaga ggccgccctc ttgcattatg tggatcctga cactcatcgt
6841 aatcttggtg agttcaaatt gtacccagaa ggttttatga cttgtgttcc taatggtagt
6901 ggtggtggtc ctcaaacttt acctattaat ggagtttttg tctttgtttc ttgggtctct
6961 cgcttttatc agttgaagcc tgtgggaacg gccggcgcgg ctcgtaggct tggaatcagg
7021 agatcataat ggcccaggct atgttgggag ctattgcggc cacagccgct ggcagcgcag
7081 ttggagcagg cattcaggct ggtactgaag ctgctttaca acatcagcgc tttcaacaag
7141 atttgaccct acagagcaat acatttaaac atgataagga aatgctggct atgcaggtgg
7201 aggcttctac ttctttatta caaaacagct tgaatactcg ctataacttg ttgacccagg
7261 caggtttgac ttctgcagac gccgctagag cagtggcggg agcccccgtc actcgtgtgg
7321 tggactggaa tggcactcga atcgccgctc cactgtcaac tgccaccact ctccgctctg
7381 gaggtttcat gtccatacca gtcatgtaca gaggtgcaaa aacagaacaa cagaaatcga
7441 caggcttttc caaccccaat tacgagactg gctcatctgt gtcgcgcacg tcgcaatggg
7501 tttcttcaca aaattccatg cggtctagcg tggcaccatt ccatccaaat gcactcagga
7561 caacgtgggt cacaccgcct ggttcatctt ctacttctac tatttcttca gcttcatcta
7621 tacctagatt ctttaatact gaaaggttac ccttgttcgc aaacaataag aggtgatttt
7681 tgtaatatga aaatgtgggc atcatattca attggataaa ttttaattgg ttttattatt
7741 taattggttt aattggataa attttaattg gttttattat ttaattggct tttgatgtta
7801 aaaaaaaaaa aaaaa
//