Typing tool
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Typing tool
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Complete norovirus genomes
| LC769710 | GI.3 | |
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| GI.P13 |
ORF1: 1..5405
ORF2: 5389..7023
ORF3: 7023..7670
LOCUS LC769710 7758 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GI Hu/IN/2018/GI.3[P13]/NICED-RV-659, nearly complete
genome.
ACCESSION LC769710
VERSION LC769710.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7758)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7758
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Norovirus GI/Hu/IN/2018/GI.3[P13]/NICED-RV-659"
/isolate="Hu/IN/2018/GI.3[P13]/NICED-RV-659"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="India: Kolkata"
/collection_date="2018-04-16"
/note="genotype: GI.3[P13]"
gene <1..5405
/gene="POL"
CDS <1..5405
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74174.1"
/translation="MASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGETT
TKIKDANMALDLLRRSQTPSPSRQTNNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQ
ESTARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSDLPSTFERAAPSSATDMQQPVSWS
SSDGVNLGINKLTTVRGPHWNMCPLPPLDARNSGPAKEPLIGDMIEFYEGHIFHYAIY
IGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYEQLKELENEPWPYA
AITNNCYEFCCKVMALDDTWLQRKLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAV
LSAINGLVSQPFKNILSKIKPLNVLSLLSNCDWTFMGVVELVVLLAELFDVFWTPPDI
SSFIASLLPDFHLQGPEDLARDLVPIILGGIGLAIGFTRDKITKVMKSAVDGLRSATQ
LGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYM
NVLDCEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMM
CGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSK
ITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCR
RVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDNQGNTPFGK
GVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTSLARANGLGFISMA
TLGKKLRNVKTMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSSQH
QAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPI
LEGKHKEHNCRVHRAAAAGRGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKN
KGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELA
EVQAGGDGGIGETEAEIRHRVFYKSKTGMRKQRQEERRQLGLVSGTEIRKRKPIDWTP
PKNDWSEDTRAVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAK
EIFGENLNNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTILIKRDSGELL
PLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVV
CGVHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFW
KSNPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAV
ETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNSFVRELGDQAA
HANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVVRAARAFGPFC
EAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNI
MCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLC
ALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDPNRLTQVLREYGLKPTRPDKTDG
PIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQ
RKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEVYIPGWQAMFRWMRFHDLSLW
TGDRDLLPDYVNDDGV"
gene 5389..7023
/gene="VP1"
CDS 5389..7023
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74175.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA
TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDILFDLQLGPQLNPFLAHLAQMYNG
WVGNMRVKVMLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI
PLEDVRNVLFHTNDNKPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFSFL
FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIRSMTVSRDQNQVIQFQNGRVTLDGQ
LQGTTPTSVSQLCKIRGTNYHAQGGSGINLTELNGEPYHAFESPAPIGFPDLGNCDWH
LTATPTQAFNDGSKVVHMSVSQGAAFAPHLGTIHYTTNDTDYNPPTSIICTLDWLSQT
AGQNNVDPWQIPSYGSTLTEAAQLAPPIYPPGFGETLVFFLSDFPISNGKNGLSVPCT
LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNGSGGGPQT
LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS"
gene 7023..7670
/gene="VP2"
CDS 7023..7670
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74176.1"
/translation="MAQAMLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG
TRIAAPLSTATTLRSGGFMSIPVMYRGAKTEQQKLTGFSNPNYETGSSVSRTSQWVSS
QNSMRSSVAPFHPNALRTTWVTPPGSSSTSTISSASSIPRFFNTERLPLFANNKR"
ORIGIN
1 tgatggcgtc taacgacgct attgccgttg ctgatgtcag caataacaat gctaacacca
61 acaatgaaaa tattggatct cgcctcatgg cgaagatccg tgggcgtata ggcccacaac
121 gtggtgaaac aaccacaaag atcaaagatg ccaacatggc gcttgacctc ctacgccggt
181 cgcaaacacc atctccaagt cggcaaacca acaatgacag tgcccctaag gcacaaaggg
241 accgtccccc acgaactgct tcagaagtaa agagggcact gggatgggat gctgaaccag
301 aacatcagga gagtacggct agggcatggt gtgacctctc aaaagaggag aaggaagaaa
361 taatgcgtaa caacgagaag ctctttgatg ctggaggtgt cactccatca gacctgccta
421 gcacatttga gagggctgcc ccaagtagtg ccactgacat gcaacaacca gtgtcatggt
481 cttctagtga tggggtcaat cttggcatca ataaattgac cactgtccgt ggcccacatt
541 ggaacatgtg tcccctacca ccgctggatg cacgtaacag tggtcctgcc aaggaacccc
601 ttatagggga catgattgag ttctacgaag gtcacatatt tcactatgcc atttacattg
661 gacaaggtaa aaccattgga gtccactcac cacaggccgc tttctccata cctaggataa
721 ccatccaccc gttagtggcc tggtggcgtg tgtgttacgt ccccaacaac caacaacgcc
781 tcacctacga acaacttaag gaattggaaa atgaaccatg gccctatgcc gcaatcacca
841 acaactgtta tgagttttgt tgtaaggtga tggcgcttga tgacacctgg ctccaaagaa
901 agctggtcac tagtggaaag ttcaaccatc ccacacagga ctggtcacag gacaccccag
961 atttccatca ggactcgaag ttagagatgg tgagagacgc cgttttgtca gccatcaacg
1021 gccttgtgtc acaacctttt aagaatatcc tttcaaaaat taaaccacta aatgtgctca
1081 gcctcttatc aaattgtgac tggaccttta tgggcgttgt ggaactagtt gtactcctag
1141 cagagctgtt cgacgtgttc tggaccccac cggacatttc gagctttatt gcatctttat
1201 tgcctgattt ccacctacaa ggcccagaag acctagccag agacctagtc cctattatat
1261 taggtggcat aggtctggca attggtttca caagagacaa aataacaaaa gtgatgaaga
1321 gtgccgttga tgggctacgg tcagcaacac agcttgggca atatgggtta gagatattct
1381 caatcatcaa gaaatacttc tttggagggg accaaacaga aaagaccctg cggggcatcg
1441 aagatgcagt gatagacatg gaagtattgt ccagcactaa tgtgacacaa ttagtcaaag
1501 ataaaaagtt agccaaagct tacatgaatg tgctggactg tgaggaagaa aaagcgagga
1561 agctctcagt ccgtagtgct gacccacaca tagtaacctc tgtcaacaac ctgatatcac
1621 gcatttctat ggcaagatca gctctagcta aagcccaagc tgaaatgaca tcccgcccac
1681 gaccagtggt cataatgatg tgtggtcctc ctggcatcgg taagaccaag gctgccgaac
1741 atctagccgg ccgactagcc gctgaaatca ggcctggagg taaggttggc cttgtacccc
1801 gggaatctat agaccactgg gatggatatc atggtgagga tgttttgctc tgggatgact
1861 atggcatgtc aaaaataaca gaggattgca acaagttgca ggctatagcc gacactgcac
1921 cactgtcgct caattgtgac aggatagaaa ataaaggtat gcaattctct tctgatgcaa
1981 taatcataac aaccaatgcc cctggcccag ccccagtgga ctttgtcaac ctaggccccg
2041 tgtgcagacg tgtggacttt ttagtttact gctccgcacc cgagattgaa cagacgcgga
2101 gggctcaccc aggtgacacc aatgccatca aggatttgtt taagaaggat ttctcacacc
2161 taaaaatgga actagcccca cagggcggtt ttgacaatca gggcaacaca ccttttggaa
2221 agggtgtcat gaaaaccaca acccttaaca gactgctgat acaggccaca gcgctagcca
2281 tggaacggca agatgaattc caacttcagg gggctgtcta caacttcgac gaggacagag
2341 tggccgcctt cactagtctg gctcgcgcta atggcctggg attcataagt atggcaacat
2401 tgggcaagaa actaaggaat gttaagacca tggaaggctt gcgcaacgca ctactgggct
2461 ataagattgg agagtgtgat ataatctgga acactagagt gtactcagtt aagagtgacg
2521 ggagcaatgt cacaattaaa gaaaaacaag caccatcctc atcccaacac caagctattt
2581 ctacagccac cttagcactg tccagactac gggctgccag ggctctcgca tacgcctctt
2641 gtctgcaaag tgcagtgttg tcaatacttc aggtggccgg ctctgctgta gtggtgagta
2701 gggccgtaaa acgcatgttt ggcacacgca ccgaacagcc cattctggaa ggcaagcaca
2761 aagaacacaa ctgcagagtg caccgtgcag cggctgctgg ccgtggtcct attggccatg
2821 atggaatcat tgaacgttat ggcctgtgtg agagtgagca ggaaggtgaa gatgatcaga
2881 ctgtagagct gcctactgct gacaaagaag gcaaaaacaa aggcaaaacc aaaaagggcc
2941 gtgggcggaa gtccaatttc aatgcattct ctaggcgtgg gctcagtgat gaagagtatg
3001 aggagtacaa gaaagtaaga gaagagaagg gtggcaacta tagcatacaa gaataccttg
3061 aggaccgcca gcggtacgaa gaagaactcg ctgaggtgca agctggtgga gacggtggga
3121 tcggtgaaac tgaagcagaa atccgccatc gggtcttcta caaatcaaaa actggcatga
3181 gaaaacaacg gcaagaggaa cgccgccagt tgggcctcgt gagcggtact gaaatccgca
3241 aacgtaagcc catagattgg acccccccca aaaatgactg gtcagaggac actagagctg
3301 tcaattatga tgaacacatt agctttgaag cccctccctc aatttggagc agagtagtta
3361 aatttggcag tggctggggt ttttgggtga gctcgacagt gttcatcacc acaacccatg
3421 ttataccacc tggtgctaag gaaatctttg gtgagaacct caacaacatt gccatccaca
3481 gggttggtga gttcacccag ttccgtttct caaagaaaat gaggcctgac ctctctggta
3541 tggtcctgga agagggttgc cctgaaggca cagtatgcac catactgata aaaagagact
3601 ctggagagct gctgccactg gctgtacgca tgggagcagt ggcctcaatg aagattcagg
3661 gaaaactcat gcatggacag tcagggatgt tgctcactgg tgctaatgct aagggcatgg
3721 accttgggac catacctggg gactgtggag caccttacgt ccacaagaga gggaatgact
3781 gggtggtctg tggggtacat gcagcagcca cgaaatcagg caacaccgtg gtgtgcgcca
3841 tacaaggcgg tgagggtgaa gccacgttgg agggtggcgg acaaaataaa ggacactatg
3901 caggacaccc aatactaaga tatggaaatg gcccttcatt gtcaaccaaa acaaaattct
3961 ggaaatcaaa ccctcagcct ctaccccccg gcacatatga accagcctac cttggtggca
4021 gggaccccag agtcgaaggt ggtccatctt tgcagcaagt gttgcgagac cagctaaagc
4081 cattcgctga acctcgtggc aggctgcccg aggcaggatt gctggaagct gcggttgaga
4141 ccgtcaccaa tgcaatcgaa caggtcatgg atacaccagt ggcatggagc tacagcgatg
4201 cctgcatgtc cctagacaaa acaaccagtt ctggttaccc ccaccacaag agaaagaatg
4261 atgattggaa tggaaactcg tttgtgagag aactgggaga tcaagcagca cacgctaata
4321 gcatgtatga acttggtaag tccatgaagc cagtgtacac agcagcactc aaggatgaac
4381 tcgtcaagcc agacaaggtg tacaacaaaa ttaagaaaag gctactctgg ggagcagacc
4441 tcggcaccgt cgtccgtgcc gccagagcct ttggaccatt ttgcgaggcc ataaaacccc
4501 atgtgatcaa attacccatc aaagtgggca tgaatgccat agaggatggt cctttaattt
4561 atgcagaaca ctccaagtat aagtatcatt ttgatgctga ttacacagca tgggattcaa
4621 cacaaaacag agagatcatg atggagtcct ttaatatcat gtgtaaactc actgctaacc
4681 cttccctggc cgcagtagtg gcgcaggatc tgctttcccc ttctgaaatg gatgtcggtg
4741 attatgtgat cagtgtcaaa gatggcctac catctggctt tccatgcacc tcacaagtga
4801 acagcatcaa ccattggatc tacacgctgt gtgctctgtc agaagtcact ggcttagccc
4861 ctgatgtaat acaatcacaa tcttattttt cattttatgg tgatgatgag atagtctcaa
4921 cagatattga atttgaccca aacaggttaa cacaagtgct aagagagtat ggcttaaaac
4981 ccacaagacc tgacaagact gatggcccaa tcattgtgag acagcaagtt gatggcttgg
5041 ttttcctccg gcgcaccatc tcgaaagatg ccattggata ccagggacgc ctcgaccgaa
5101 attccattga gagacagctc tggtggaccc gtgggcccaa ccatgatgat ccatttgaaa
5161 ccttagtccc acacacacag agaaaggtcc agctgatatc cctactaggt gaagctgcac
5221 tccatggtga gaaattctac agaaagatag ccagtagggt gatccaggaa gtcaaagagg
5281 gggggttgga agtctacatc cctgggtggc aagccatgtt ccgctggatg cgattccatg
5341 atttgagctt atggacagga gaccgcgatc tcttgcccga ttatgtaaat gatgatggcg
5401 tctaaggacg ccccaacaaa catggatggc accagtggtg ccggtcagct ggtaccagag
5461 gcaaatacag ctgaacctat atcaatggat ccagtggctg gagccgcaac agcggtcgct
5521 actgctggac aaattaatat gattgacccc tggataatga gtaattttgt gcaggccccg
5581 caaggggaat tcactgtctc accaaataat acccctggag atattttgtt tgatttgcaa
5641 ttaggacccc aattaaatcc cttcctagcc catttagccc agatgtataa tggttgggta
5701 ggcaatatgc gtgtgaaggt gatgcttgct ggcaacgctt ttaccgcggg aaaaataata
5761 attagctgca tacccccagg cttcacttcc caaaacattt ccattgctca aatgacaatg
5821 ttccctcacg ttattgctga cgtgagggtc ctagaaccta tagagatacc ccttgaggat
5881 gtgaggaatg tgctgtttca caccaatgac aataaaccaa caatgaggct cgtatgcatg
5941 ttgtacaccc ccctgcgagc caatggcagt tcttctggca cggatccttt tgtcatagct
6001 ggcagggtcc tcacctgtcc agattcaact tttagcttcc ttttcttagt accccccaat
6061 gttgagcaaa agactaggcc ttttagtgtc cccaatatac ctttgaatac actgtcaaac
6121 tcaagggtgc catcattgat caggtctatg actgtctcta gagatcagaa tcaagtaatt
6181 cagttccaaa atggtagggt tacattggat ggtcaactgc agggtaccac acccacgtca
6241 gtgagccaat tgtgtaaaat tagaggcacc aattatcatg cacaaggggg tagtgggata
6301 aatttgacag agctgaatgg tgaaccttac catgcctttg agagtcccgc tccaataggg
6361 tttccagatc ttggcaattg tgattggcat ctcactgcaa cccccacgca ggctttcaac
6421 gacggatcga aggtcgtgca catgtcagtc tcccaaggcg cagcctttgc cccacactta
6481 ggcaccatac attacaccac caatgacact gattataacc cccccaccag cataatttgt
6541 acactagatt ggctgtctca aactgctggt cagaacaatg tcgacccctg gcagatacca
6601 agttatggat ctactttaac cgaggctgcc cagttggcgc ctcctattta cccccctggg
6661 tttggtgaaa cattggtttt ctttctatca gatttcccta tttccaatgg taagaatgga
6721 cttagtgtgc cttgtaccct tccacaagaa tttgtcaccc actttgtgaa tgagcaggcc
6781 ccaattagag gagaggccgc cctcttgcat tatgtggatc ctgacactca tcgtaatctt
6841 ggtgagttca aattgtaccc agaaggtttt atgacttgtg ttcctaatgg tagtggtggt
6901 ggtcctcaaa ctttacctat taatggagtt tttgtctttg tttcttgggt ctctcgcttt
6961 tatcagttga agcctgtggg aacggccggc gcggctcgta ggcttggaat caggagatca
7021 taatggccca ggctatgttg ggagcaattg cggccacagc cgctggcagc gcagttgggg
7081 caggcattca ggctggtact gaagctgctt tacaacatca gcgctttcaa caagatttga
7141 ccctacagag caatacattt aaacatgata aggaaatgct ggctatgcag gtggaggctt
7201 ctacttcttt attacaaaac agcttgaata ctcgctataa cttgttgacc caggcaggtt
7261 tgacttctgc agacgccgct agagcagtgg cgggagcccc cgtcactcgt gtggtggact
7321 ggaatggcac tcgaatcgcc gctccactgt caactgccac cactctccgc tctggaggtt
7381 tcatgtccat accagtcatg tacagaggtg caaaaacaga acaacagaaa ttgacaggct
7441 tttccaaccc caattacgag actggctcat ctgtgtcgcg cacgtcgcaa tgggtttctt
7501 cacaaaattc catgcggtct agcgtggcac cattccatcc aaatgcactc aggacaacgt
7561 gggtcacacc gcctggttca tcttctactt ctactatttc ttcagcttca tctataccta
7621 gattctttaa tactgaaagg ttacccttgt tcgcaaacaa taagaggtga tttttgtaat
7681 atgaaaatgt gggcatcata ttcaattgga taaattttaa ttggttttat tatttaattg
7741 gtttaattgg ataaattt
//