Typing tool
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Typing tool
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Complete norovirus genomes
| LC769709 | GII.3 | |
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| GII.P16 |
ORF1: 1..5094
ORF2: 5075..6721
ORF3: 6721..7485
LOCUS LC769709 7543 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2018/GII.3[P16]/NICED-RV-629, nearly complete
genome.
ACCESSION LC769709
VERSION LC769709.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7543)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7543
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2018/GII.3[P16]/NICED-RV-629"
/isolate="Hu/IN/2018/GII.3[P16]/NICED-RV-629"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2018-04-04"
/note="genotype: GII.3[P16]"
gene <1..5094
/gene="POL"
CDS <1..5094
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74171.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPLRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLYWRVVYTPQYLTSPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSESETKEEAP
KSGDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5075..6721
/gene="VP1"
CDS 5075..6721
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74172.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6721..7485
/gene="VP2"
CDS 6721..7485
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74173.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANVINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSTMRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESSV"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa
61 tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc cctcggggct
121 aggcccaaac agcctgcccc gagagacgaa ccacaaaagc ccctaagacc accaactccc
181 gagttggtca agaggatacc ccctcctcca cctaatggcg aagaagaaga agaaccagtc
241 attaggtacg aggttaagag tgggatctct ggcctgcccg agctcacaac agtcccccaa
301 ccggacgtgg ccaacacagc attcagtgtc ccaccactga gtttgagaga aaacagggag
361 gccaaggaac cgctaacagg ggcaatatta gagatgtggg atggagagat ataccactat
421 ggcctgtacg tggagaaagg cttagtgttg ggtgtgcaca aaccacctgc agccataagc
481 atggcaagag tggagctgac gcctctgtca ttgtactggc gtgtggtgta cactccccaa
541 tacctcacct cccctgaaac tctcaggagg ctcaacggag aggcgttccc ttacaccgcc
601 tttgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga ctcatggctt
661 agcaggagga tggtgcaaag aacaacgggc ttcttcagac cttaccaaga gtggaacaga
721 aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat attcctatgt
781 tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat taaaccatta
841 aatatattga atatcctggc aacgtgtgac tggacgtttg ccggaatagt ggagtctatg
901 atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc tgctatgatc
961 gctcccttac tcggggacta tgagttgcaa gggccagaag acctcgccgt tgaactcgta
1021 cctgtagtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa aattggcaaa
1081 atgttgtcct cagcagcatc aacactcagg gcttgcaaag atcttggcgc ctatggctta
1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc caatgagtta
1201 gccatggtga gggccataga ggatgccgtg ttagatcttg aggcaataga aaataaccac
1261 atgacaaccc tgttgaaaga caaagacagc ttagcaacat atatgaaaac actagacatg
1321 gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat agttgggaca
1381 atcaacgccc tgctggctcg aatagcagcg gccaggtcat tagtccacag ggccaaggaa
1441 gagctatcta gcaggataag accagtggtt gttatgatat ctggcaaacc aggaataggc
1501 aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac aggggatcaa
1561 agagtcgggc tcataccaag gaacggtgtg gaccattggg atgcatacaa aggtgagaga
1621 gtcgtgctgt gggatgacta tggcatgagt aatcccattc atgatgctct tcgcatacaa
1681 gaattggctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa taagggaaaa
1741 gtttttgaca gtgaagtcat aataattaca acaaaccttg ccaatccagc cccacttgat
1801 tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc tgaggcaccg
1861 gaagtagaaa aggcgaaacg ggactttcct ggtcagccag atatgtggaa ggacaccttc
1921 aagccggact tttcacacat caagctacag cttgcacctc agggcggctt tgacaagaat
1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc tctgattgcc
2041 cgtgcatcag gcctactgca tgagagaatg gatgaatttg aactccaagg tcctacaatc
2101 accaccttca atttcgaccg gaacagaatc acagcattta gacaattggc tgcagaaaac
2161 aagtatggat tggtggacac catgaaagtt ggcaatcaac taaaaggagt gaaaaccatg
2221 gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat catctacggt
2281 ggctccacgt atgaccttga atctgatggc aagggcaaag ttttggtgga aaaggtcaag
2341 aacacctctg tacagaccaa caacgagttg gccggggccc tgcaccatct caaacatgct
2401 cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attccatcat acaaattgcc
2461 ggcgctgcat ttgtcaccac gcgcattgca cgccgcatga acatacaaga actctggtcg
2521 aagccacaat tagatcaaag tgaatcagag actaaggaag aggcccccaa gtcgggagat
2581 gacgagttca tcatatcttc taaggacatc aaggaggaag gaaagaaggg caaaaacaaa
2641 actggccgtg gcaagaaaca cactgcattt tccagcaagg gcttgagcga tgaggagtat
2701 gacgagtaca agaggataag agaagagaga aatgggaagt actccataga ggagtatctt
2761 caagacagag acaggtacta tgaggagctc gccattgcca aggccacgga agaagacttc
2821 tgtgaagagg aggagatcaa aatccgtcag agaatttttc gtcccaccag gaaacaaaga
2881 aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa aagaaaccct
2941 gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt tgactacaat
3001 gagaaactgg actttgaggc tcccccaagc atatggtcta ggattgtgag ctttggttct
3061 ggctggggct tctgggtatc accaagcctg ttcataacat caactcatgt aatccccgca
3121 ggcataacag aagcgtttgg agtctccatc aaacaaattc agatccacaa atcaggtgaa
3181 ttttgccgat tcagattccc aaaaccaatt agaccagatg tgacaggaat gattttggaa
3241 gaaggtgcgc ctgaaggcac cgtggcaact gtgcttatca aacgccccac cggagagctc
3301 atgcctcttg cagccagaat gggaacacac gcaactatga aaattcaagg ccgcatggtt
3361 ggcggacaga tgggtatgtt gctcactggg tcaaatgcta aaggaatgga tttgggaaca
3421 actcctggtg actgtggttg tccttacatc tataaaaggg gcaatgatta tatagtcatt
3481 ggggtgcaca ctgcagcagc ccgtggtgga aacaccgtca tctgcgccac acagggaagt
3541 gagggcgagg caactcttga gggtggagat gacaaaggaa catactgtgg ggcacccatt
3601 ctaggccctg ggggcgcacc aaagttgagc accaaaacca aattttggag gtcatcaaac
3661 acgccccttc caccagggac atatgaacct gcctacctcg gtggccgtga tccgcgtgtt
3721 aagggtgggc cctccttgca gcaggtaatg agagatcagt tgaagccatt cactgaaccc
3781 aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat tattaatgtc
3841 ctcgaacaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcctcactt
3901 gacaaaacca cctccagcgg gcatccccat cacgtccgaa agaatgaatt ctggaatggt
3961 gaaaccttca ctggtaaatt ggcagaccaa gcatcaaaag caaacctaat gtttgaggaa
4021 gggaaacaca tgacaccagt gtatacagca gcactcaagg atgagctagt taagactgag
4081 aaaatctacg gaaagatcaa gaagagacta ctctggggct ctgacttgtc caccatgatc
4141 cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcacactg catatcactc
4201 ccagtacgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga gaaacattcc
4261 agatataaat accactatga tgcagactac tctcgttggg attcaacaca acagagggca
4321 gtactagcgg cagccttgga aatcatggtt agattctctg cagaaccaca attggcacaa
4381 atagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt taaaatcaca
4441 ataaatgaag ggctcccatc tggtgtgccg tgcacttctc aatggaactc catcgcacac
4501 tggctgttaa ctctctgtgc cttgtctgaa gtcaccaaac tgtcccctga catcatacaa
4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga cataaaattg
4621 gaccctgaac agctaaccgc caaattgaag gagtacggtc tgaaaccaac ccgcccagac
4681 aagaccgagg gacccctgat catcagtgaa gatttgaacg gactcacttt cctccgaagg
4741 acggtgactc gtgacccagc tggctggttt ggaaaactcg accaaagctc aatcttgagg
4801 cagatgtact ggactagagg accaaatcat gaagacccca gtgagacaat gataccccat
4861 tctcaaagac ccatacagct catggcactg cttggtgaag cctctcttca cgggccctct
4921 ttctatagta aaatcagtaa actggtcata actgaactca aagaaggtgg gatggacttt
4981 tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg caatggcgct
5161 agagccagtg gcgggtgcag cgatagcagc acccctcact ggtcagcaaa atataattga
5221 tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag tgtcccccag
5281 aaattcccct ggtgaagtcc ttcttaattt ggaactgggc ccagaaataa atccctattt
5341 ggcccatctt gctagaatgt acaatggtta tgcaggtgga tttgaagtgc aggtggtcct
5401 agctggaaat gcgtttacag caggaaagat aatctttgca gccatccccc ccaattttcc
5461 aattgacaat ttaagtgcag cacagatcac aatgtgccca catgtgattg tggatgtcag
5521 gcagttggaa ccagtcaacc tcccgatgcc tgacgtccgc aacaacttct ttcattataa
5581 ccaagggtct gactcgaggt tacgcctaat tgcaatgcta tacacacccc ttagggcaaa
5641 caattctggg gatgatgttt tcactgtgtc ttgtagagtg ttaactagac ctagtcctga
5701 tttctcattc aatttccttg tgccacctac tgtggagtca aagacaaaac ccttttccct
5761 ccctatcctg actatctctg aaatgtccaa ttctaggttc ccagtaccaa ttgattccct
5821 acataccagt cctactgaga atattgttgt tcagtgccaa aatgggcgcg tcacccttga
5881 tggtgaactg atgggcacca cccaactctt gcctagccaa atctgtgctt tcaggggcgt
5941 tctcaccaga tcaacaagca gagccagtga ccaggccgat acagcaaccc ccagattgtt
6001 taattattat tggcacatac aattggataa tctaaacgga accccttatg atcctgcaga
6061 agacatacca ggccccctag ggacaccaga tttccgtggc aaagtctttg gcgtggccag
6121 ccagagaaat cctgatgcca cgactagggc acatgaggca aagatagata ccacatctgg
6181 ccgcttcacc ccaaagctag gctcattaga gatatccact gaatctagtg attttgacca
6241 aaaccaaccg acaagattca ccccagttgg cattggagtt gaccatgagg cagactttca
6301 gcaatggacc ctacccgact atgctggtca gttcacacac aacatgaact tagccccagc
6361 tgttgctcct aacttccctg gtgagcagct ccttttcttc cgctcacatt tgccatcttc
6421 tggtgggcga tccaatggga ttctagactg cctagttccc caagaatggg tacagcactt
6481 ctaccaagaa tcagccccct ctcagtctca agtggccctg gttaggtatg ttaatcctga
6541 cactggtaga gtgttatttg aggccaagct acacaaatta ggtttcatga ctatagccaa
6601 gaatggtgat tctccaataa ctgtccctcc aaatggatac tttaggtttg aatcttgggt
6661 gaaccctttt tacacacttg cccccatggg aactgggaat gggcgtagaa ggattcaata
6721 atggctggag cttttatagc aggattggct ggtgacatgc tcacaaatac tgtaggatct
6781 ttagttaatg caggagctaa tgttattaat caaacaattg attttgaaaa taataaatat
6841 ttgcaaaatg cttcttttaa tcatgataag gagatgctga atgcacaagt tgaggcaaca
6901 aagaagttac aggctgacat gattgctatc aaacaagggg ctttgaccgc tggcggcttc
6961 tcccctactg atgcagcccg tggggcaatt aatgccccca tgacaaaagt cctagattgg
7021 aatggaacga gatactgggc accaggtgcc acctccacaa cctcgatgtc gggtggcttt
7081 acacatcaaa ctgtgcacag gtccacacca aactttaaaa cgaaccaggc ccccaaatcc
7141 acacccagca gtgggtctac aatgaggtca aactcaaccc aaatcactag cctgagctca
7201 cactcgtccg ggtcgtctcg atctagcggg tctacagtca tcagctcaat accatcctct
7261 aacagaacta gggactgggt caaccagcaa aattttaatt tggaaccaca catgcctgga
7321 tctcttagga cagcttttgt ctctccacca tctagtacag cctctagctc aggcacagtc
7381 tcaactgtgc ccaaaaatgt tttggactcc tggacatctg cgttcaacac gcgcagacag
7441 ccgctatttg cacaccttcg cagaaggggg gagtcaagtg tttagtgaaa agattatttt
7501 aaatttggtt taaattaggt ttaatttggt atcttttaaa aaa
//