Typing tool
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Typing tool
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Complete norovirus genomes
| LC769707 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6695
ORF3: 6695..7501
LOCUS LC769707 7553 bp RNA linear VRL 11-JUL-2025
DEFINITION Norovirus GII Hu/IN/2018/GII.4 Sydney[P16]/NICED-RV-515, nearly
complete genome.
ACCESSION LC769707
VERSION LC769707.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Lo,M., Doan,Y.H., Mitra,S., Saha,R., Miyoshi,S.I., Kitahara,K.,
Dutta,S., Oka,T. and Chawla-Sarkar,M.
TITLE Comprehensive full genome analysis of norovirus strains from
eastern India, 2017-2021
JOURNAL Gut Pathog 16 (1), 3 (2024)
PUBMED 38238807
REMARK DOI:10.1186/s13099-023-00594-5
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7553)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7553
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2018/GII.4
Sydney[P16]/NICED-RV-515"
/isolate="Hu/IN/2018/GII.4 Sydney[P16]/NICED-RV-515"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India: Kolkata"
/collection_date="2018-02-26"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5092
/gene="POL"
CDS <1..5092
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74165.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKSQKPPRPPTPELVKRTPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSTPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANVFLCSLSALFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGS
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEASKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWNGE
TFTSKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKVSKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5073..6695
/gene="VP1"
CDS 5073..6695
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74166.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6695..7501
/gene="VP2"
CDS 6695..7501
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74167.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRINLRDAVPARGPPSKSS
NSSTAASVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTSAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ctgcaacaac aacaacgaca aggaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag
121 gcccaaacag cctgccccga gagacaaatc acaaaagccc ccaagaccac caactcccga
181 gttggtcaag aggacacccc ctcctccacc taatggcgaa gaagaagaag aaccagtcat
241 taggtatgag gttaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcat tcagcactcc accactgagc ttgagagaaa acagggaggc
361 caaggaaccg ctaacagggg caatattaga gatgtgggat ggagagatat accactacgg
421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagta gagctgacgc cgctgtcatt gtactggcgt gtggtgtata ctccccaata
541 cctcatctcc cctgaaactc tcaggaggct caacggagag gcattccctt acaccgcctt
601 tgacaacaac tgctatgcct tttgctgctg ggtgttggat ctcaatgact catggcttag
661 caggaggatg gtgcaaagaa caacgggttt cttcagacct taccaagagt ggaacagaaa
721 acccctgcct accatggatg actccaaaat taagaaggta gcaaatgtat tcctatgttc
781 attgtccgca ttattcacta gacccataaa agacctcata ggaaaaatca aaccgttaaa
841 catattgaac atcctggcaa cgtgtgactg gacgtttgcc ggaatagtgg agtctctgat
901 actgcttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactc ggggactacg agttgcaagg gccagaagac ctcgccgttg aactcgtgcc
1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcctca gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttaga
1141 gatacttaaa ttggtcatga agtggttctt cccgaagaag gaggaggcca atgagctagc
1201 catggtgagg gccatagagg atgctgtact agatcttgag gcaatagaaa ataaccacat
1261 gacaaccctg ttgaaagaca aagacagcct agcaacatac atgaaaacac tggacatgga
1321 ggaggagaaa gccagaaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgccctg ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaggaaga
1441 gctatctagc aggttgagac cagtggttgt tatgatatct ggcaaaccag gaataggaaa
1501 aacccatctg gccagggagg tggcaagaaa ggtggcatcc actctcacag gggaccaaag
1561 agtcggactc ataccaagaa acggtgtcga ccattgggat gcatacaaag gtgagagggt
1621 cgtgctgtgg gacgactacg gcatgagtaa ccccattcat gatgcccttc gcatacaaga
1681 gttggctgac acgtgtcccc ttaccttaaa ttgtgacaga attgaaaata agggaaaagt
1741 ttttgacagt gaagttataa taattacaac aaaccttgcc aatccagccc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgacttcctg gtgtacgctg aggcaccaga
1861 agtagaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa
1921 gtcggacttt tcacacatca agctacagct tgcaccacag ggcggctttg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gaccctcacc accggttctc tgattgcccg
2041 tgcatcaggc ctactgcacg agaggatgga tgaatttgaa ctccagggtc ccacaatcac
2101 caccttcaac ttcgaccgga acagaatcac agcattcaga caattggctg cagaaaacaa
2161 gtatggattg gtggatacca tgaaagttgg caatcaacta aaaggagtga aaaccatgga
2221 agaactcaaa caagcaatca ggaatgtgac cattaagagg tgccggatca tttacggtgg
2281 ttccacgtat gaccttgaat ctgatggcaa gggcaaagtt ctggtggaaa aggtcaagaa
2341 cacctctgta cagaccaaca acgagttggc cggggccctg caccatctca aacacgcccg
2401 aatcaggtac tatgtcaaat gtgtacaaga agcagtctat tccatcatac aaattgccgg
2461 cgctgcgttt gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tttggtcgaa
2521 gccacaatta gatcaaaatg aatcagagac taaggaagag gcccccaagt cagaagatga
2581 cgagttcatc atatcttcta aggacatcaa ggaagaagga aagaagggca aaaacaaaac
2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga
2701 cgagtacaag agaataagag aagagagaaa tgggaagtac tctatagagg agtatctcca
2761 agacagagac aggtactatg aggagctcgc cattgccaaa gccacggaag aagacttctg
2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaacgaaa
2881 ggaagagagg gccacattag ggctagtaac gggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac agaagtgttg actacaatga
3001 gaaactggac tttgaggccc ctccaagcat atggtctagg atcgtgagct ttggttctgg
3061 ctggggcttc tgggtatcac caagcctgtt tataacatca actcatgtaa tccccgcagg
3121 cataacagaa gcatttggag tccccatcaa acaaattcag atccacaaat caggtgaatt
3181 ttgccgattc agattcccaa aaccaatcag accagatgtg acaggaatga tcttggaaga
3241 aggtgcgcct gagggcaccg tggcaactgt gctcatcaaa cgtcccaccg gagagctcat
3301 gcctcttgca gctagaatgg gaactcacgc aaccatgaaa attcaaggcc gcatggttgg
3361 tggacagatg ggcatgttgc tcactggatc aaatgctaaa ggaatggatt taggaacgac
3421 tcctggtgac tgtggctgtc cttacatcta taaaaggggc aatgactata tagtcattgg
3481 ggtacacact gcagcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagcga
3541 gggtgaggca actcttgaag gtggagatga caaaggaaca tactgtgggg cacccattct
3601 aggccctggg agtgcaccaa aattgagcac caaaaccaaa ttctggaggt cttcgaacac
3661 accccttcca ccaggaacat atgagcctgc ctacctcggt ggccgtgatc cgcgtgttaa
3721 gggtgggccc tccttgcagc aggtaatgag agaccagtta aagccattca ctgaacccag
3781 gggcaaacct ccaagaccaa gtgtattgga agcatccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga
3901 caaaaccacc tccagtgggt atccccatca cgtccgaaag aatgaattct ggaatggtga
3961 gactttcact agtaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacacatg acaccagtgt atacagcagc actcaaggat gagctagtca agactgagaa
4081 aatctatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg
4141 gtgcgctagg tcatttggtg gactcatgga tgagatgaag gcacactgca tatcactccc
4201 agtccgagtc ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atacaaatat cactatgatg cagactactc tcgttgggac tcaacacaac agagggcagt
4321 actagcagca gccttggaaa tcatggtcag attctctgca gaaccacaat tggcacaaat
4381 agtcgctgag gacctgctag cccccagtgt agtagacgtg ggggacttta aaataacaat
4441 aaatgaaggg ctcccctctg gtgtgccatg tacttctcaa tggaactcca tcgcacattg
4501 gctgctaaca ctatgtgcct tgtctgaagt caccaaactg tctcctgaca ttatacaggc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaactaga
4621 ccctgaacag ctgaccgcta aattgaagga gtacggcctg aaaccaaccc gcccagacaa
4681 aaccgaggga cccctgatca tcagtgaaga tttgaacggg ctcactttcc tccggaggac
4741 ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca
4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccattc
4861 tcaaagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt
4921 ttacagtaaa gtcagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgagt gacgccaacc
5101 catctgatgg gtccgcagcc aacctcgtac cagaggtcaa caatgaggtt atggctttgg
5161 agcccgttgt tggtgccgct atcgcggcac ctgtagcggg ccaacaaaat gtaattgacc
5221 cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagtg tcccctagaa
5281 acgctccagg tgaaatacta tggagcgcgc ccctaggccc tgacctaaat ccctacctat
5341 cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg
5401 cggggaacgc gttcaccgcc ggaaagatca tatttgcagc agtcccacca aattttccaa
5461 ctgaaggctt aagtcctagc caggtcacta tgttccccca tataatagta gatgttagac
5521 aattagaacc tgtgctgatt cccttacccg atgttaggaa taatttctac cattataatc
5581 aatcaaatga ctccactatt aagttgatag caatgttgta tacaccactt agggctaaca
5641 atgctgggga cgatgtcttc acagtttcgt gccgagttct cacgagacca tcccccgatt
5701 ttgatttcat attcttagtg ccacccacag ttgagtcaag aactaaacca ttctctgtcc
5761 cagtcttgac tgttgaggag atgaccaatt caagattccc cattcctttg gaaaagttgt
5821 tcacgggccc cagcagcgcc tttgttgttc aaccacaaaa tggcaggtgc acaactgatg
5881 gcgtgctcct aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg
5941 tcacccacat cacaggtagt cacaactata cgatgaattt ggcttctcaa aattggaaca
6001 attatgaccc aacagaagaa atcccagccc ctctaggaac tccagatttt gtggggaaga
6061 ttcaaggcat gctcacccaa accacaagga cagatggttc aacacgcggc cacaaagcta
6121 cagtgtacac tgggagcgcc gactttgctc caaaactggg tagagttcaa tttgaaactg
6181 acacaaacca tgattttgaa gtcaaccaaa acacaaagtt caccccagtc ggtgtcatcc
6241 aagatggtgg caccacccac cgaaatgaac cccaacagtg ggtgctccca agttactcag
6301 gcagaaacac tcacaatgta catctggccc ccgctgtagc tcccactttt ccgggtgaac
6361 agcttctctt ctttagatcc accatgcccg gatgcagcgg gtaccccaac atggatctgg
6421 actgtttgct cccccaggaa tgggtgcagt acttctacca agaagcagcc ccagcacaat
6481 ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg tttgaatgta
6541 agcttcacaa atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc
6601 cccccaatgg ttactttagg tttgattcct gggtcaatca gttctacaca cttgccccca
6661 tgggaaatgg aacggggcgt agacgtgtag tataatggct ggagctttct ttgctggatt
6721 ggcatctgat gtccttggct ctggacttgg ctctcttatc aatgctgggg ctggggccat
6781 caatcaaaaa gttgagtttg aaaacaacag gaaattgcaa caagcttcct tccaatttag
6841 cagcaatctg caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga
6901 ggccaccaaa aagctgcaac aggaaatgat gaaggttaag caggcaatgc tcctagaggg
6961 tgggttctct gagacagatg cagcccgcgg ggcaattaac gcccccatga caaaagctct
7021 ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat acaatgcagg
7081 ccgcttttcc acccctcaat catcgggggc attgccagga agaattaatc ttagggatgc
7141 tgttcctgct cggggacccc ccagtaagtc ttctaactct tctactgccg cctctgtgta
7201 ctcaaatcaa accacttcaa cgagacttgg ttctacagct ggttctggga ccagtgtttc
7261 gagcctcccg tcgactgcaa ggactaggag ctgggttgag gaccaaagta ggaatttgtc
7321 acctttcatg agaggggccc acaacatatc atttgtcacc ccaccatcta gcaggtcctc
7381 tagccaaggc acagtctcaa ccgtgcctaa agagattttg gactcctgga ctagcgcttt
7441 caacacgcgc aggcagcctc tcttcgctca cattcgtagg cgaggggagt cacgggtgta
7501 atgtgaaaag gcaaaattga ttatttttct ttttcttttc tttagtgtct ttt
//