Typing tool
|
Complete norovirus genomes
LC769707 | GII.4 Sydney | ||
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GII.P16 |
ORF1: 1..5092 ORF2: 5073..6695 ORF3: 6695..7501LOCUS LC769707 7553 bp RNA linear VRL 17-OCT-2023 DEFINITION Norovirus GII Hu/IN/2018/GII.4 Sydney[P16]/NICED-RV-515, nearly complete genome. ACCESSION LC769707 VERSION LC769707.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Doan,Y.H. TITLE Norovirus in India JOURNAL Unpublished REFERENCE 2 (bases 1 to 7553) AUTHORS Doan,Y.H. and Oka,T. TITLE Direct Submission JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of Infectious Diseases, Center for Emergency Preparedness and Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7553 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Norovirus GII/Hu/IN/2018/GII.4 Sydney[P16]/NICED-RV-515" /isolate="Hu/IN/2018/GII.4 Sydney[P16]/NICED-RV-515" /host="Homo sapiens" /db_xref="taxon:122929" /country="India: Kolkata" /collection_date="2018-02-26" /note="genotype: GII.4 Sydney[P16]" gene <1..5092 /gene="POL" CDS <1..5092 /gene="POL" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BEI74165.1" /translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP APRDKSQKPPRPPTPELVKRTPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV ANTAFSTPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANVFLCSLSALFTRPIKDLIGKI KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK SASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREVA RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGS APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK PPRPSVLEASKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWNGE TFTSKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKVSKLVITELKEGGMDFYVPRQEPMF RWMRFSDLSTWEGDRNLAPNFVNEDGVE" gene 5073..6695 /gene="VP1" CDS 5073..6695 /gene="VP1" /codon_start=1 /product="major capsid protein" /protein_id="BEI74166.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV" gene 6695..7501 /gene="VP2" CDS 6695..7501 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BEI74167.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRINLRDAVPARGPPSKSS NSSTAASVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTSAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 ggcgtctaac gacgctaccg ttgccgttgc ctgcaacaac aacaacgaca aggaaaaatc 61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag 121 gcccaaacag cctgccccga gagacaaatc acaaaagccc ccaagaccac caactcccga 181 gttggtcaag aggacacccc ctcctccacc taatggcgaa gaagaagaag aaccagtcat 241 taggtatgag gttaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc 301 ggacgtggcc aacacagcat tcagcactcc accactgagc ttgagagaaa acagggaggc 361 caaggaaccg ctaacagggg caatattaga gatgtgggat ggagagatat accactacgg 421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat 481 ggcaagagta gagctgacgc cgctgtcatt gtactggcgt gtggtgtata ctccccaata 541 cctcatctcc cctgaaactc tcaggaggct caacggagag gcattccctt acaccgcctt 601 tgacaacaac tgctatgcct tttgctgctg ggtgttggat ctcaatgact catggcttag 661 caggaggatg gtgcaaagaa caacgggttt cttcagacct taccaagagt ggaacagaaa 721 acccctgcct accatggatg actccaaaat taagaaggta gcaaatgtat tcctatgttc 781 attgtccgca ttattcacta gacccataaa agacctcata ggaaaaatca aaccgttaaa 841 catattgaac atcctggcaa cgtgtgactg gacgtttgcc ggaatagtgg agtctctgat 901 actgcttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc 961 tcccttactc ggggactacg agttgcaagg gccagaagac ctcgccgttg aactcgtgcc 1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat 1081 gttgtcctca gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttaga 1141 gatacttaaa ttggtcatga agtggttctt cccgaagaag gaggaggcca atgagctagc 1201 catggtgagg gccatagagg atgctgtact agatcttgag gcaatagaaa ataaccacat 1261 gacaaccctg ttgaaagaca aagacagcct agcaacatac atgaaaacac tggacatgga 1321 ggaggagaaa gccagaaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat 1381 caacgccctg ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaggaaga 1441 gctatctagc aggttgagac cagtggttgt tatgatatct ggcaaaccag gaataggaaa 1501 aacccatctg gccagggagg tggcaagaaa ggtggcatcc actctcacag gggaccaaag 1561 agtcggactc ataccaagaa acggtgtcga ccattgggat gcatacaaag gtgagagggt 1621 cgtgctgtgg gacgactacg gcatgagtaa ccccattcat gatgcccttc gcatacaaga 1681 gttggctgac acgtgtcccc ttaccttaaa ttgtgacaga attgaaaata agggaaaagt 1741 ttttgacagt gaagttataa taattacaac aaaccttgcc aatccagccc cacttgatta 1801 tgtcaacttt gaggcctgtt ccaggagaat tgacttcctg gtgtacgctg aggcaccaga 1861 agtagaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa 1921 gtcggacttt tcacacatca agctacagct tgcaccacag ggcggctttg acaagaatgg 1981 caacacccca catgggaaag gagtgatgaa gaccctcacc accggttctc tgattgcccg 2041 tgcatcaggc ctactgcacg agaggatgga tgaatttgaa ctccagggtc ccacaatcac 2101 caccttcaac ttcgaccgga acagaatcac agcattcaga caattggctg cagaaaacaa 2161 gtatggattg gtggatacca tgaaagttgg caatcaacta aaaggagtga aaaccatgga 2221 agaactcaaa caagcaatca ggaatgtgac cattaagagg tgccggatca tttacggtgg 2281 ttccacgtat gaccttgaat ctgatggcaa gggcaaagtt ctggtggaaa aggtcaagaa 2341 cacctctgta cagaccaaca acgagttggc cggggccctg caccatctca aacacgcccg 2401 aatcaggtac tatgtcaaat gtgtacaaga agcagtctat tccatcatac aaattgccgg 2461 cgctgcgttt gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tttggtcgaa 2521 gccacaatta gatcaaaatg aatcagagac taaggaagag gcccccaagt cagaagatga 2581 cgagttcatc atatcttcta aggacatcaa ggaagaagga aagaagggca aaaacaaaac 2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga 2701 cgagtacaag agaataagag aagagagaaa tgggaagtac tctatagagg agtatctcca 2761 agacagagac aggtactatg aggagctcgc cattgccaaa gccacggaag aagacttctg 2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaacgaaa 2881 ggaagagagg gccacattag ggctagtaac gggttcagaa atcagaaaaa gaaaccctga 2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac agaagtgttg actacaatga 3001 gaaactggac tttgaggccc ctccaagcat atggtctagg atcgtgagct ttggttctgg 3061 ctggggcttc tgggtatcac caagcctgtt tataacatca actcatgtaa tccccgcagg 3121 cataacagaa gcatttggag tccccatcaa acaaattcag atccacaaat caggtgaatt 3181 ttgccgattc agattcccaa aaccaatcag accagatgtg acaggaatga tcttggaaga 3241 aggtgcgcct gagggcaccg tggcaactgt gctcatcaaa cgtcccaccg gagagctcat 3301 gcctcttgca gctagaatgg gaactcacgc aaccatgaaa attcaaggcc gcatggttgg 3361 tggacagatg ggcatgttgc tcactggatc aaatgctaaa ggaatggatt taggaacgac 3421 tcctggtgac tgtggctgtc cttacatcta taaaaggggc aatgactata tagtcattgg 3481 ggtacacact gcagcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagcga 3541 gggtgaggca actcttgaag gtggagatga caaaggaaca tactgtgggg cacccattct 3601 aggccctggg agtgcaccaa aattgagcac caaaaccaaa ttctggaggt cttcgaacac 3661 accccttcca ccaggaacat atgagcctgc ctacctcggt ggccgtgatc cgcgtgttaa 3721 gggtgggccc tccttgcagc aggtaatgag agaccagtta aagccattca ctgaacccag 3781 gggcaaacct ccaagaccaa gtgtattgga agcatccaaa caaaccatca tcaatgtcct 3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga 3901 caaaaccacc tccagtgggt atccccatca cgtccgaaag aatgaattct ggaatggtga 3961 gactttcact agtaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg 4021 gaaacacatg acaccagtgt atacagcagc actcaaggat gagctagtca agactgagaa 4081 aatctatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg 4141 gtgcgctagg tcatttggtg gactcatgga tgagatgaag gcacactgca tatcactccc 4201 agtccgagtc ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag 4261 atacaaatat cactatgatg cagactactc tcgttgggac tcaacacaac agagggcagt 4321 actagcagca gccttggaaa tcatggtcag attctctgca gaaccacaat tggcacaaat 4381 agtcgctgag gacctgctag cccccagtgt agtagacgtg ggggacttta aaataacaat 4441 aaatgaaggg ctcccctctg gtgtgccatg tacttctcaa tggaactcca tcgcacattg 4501 gctgctaaca ctatgtgcct tgtctgaagt caccaaactg tctcctgaca ttatacaggc 4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaactaga 4621 ccctgaacag ctgaccgcta aattgaagga gtacggcctg aaaccaaccc gcccagacaa 4681 aaccgaggga cccctgatca tcagtgaaga tttgaacggg ctcactttcc tccggaggac 4741 ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca 4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccattc 4861 tcaaagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt 4921 ttacagtaaa gtcagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta 4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga 5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgagt gacgccaacc 5101 catctgatgg gtccgcagcc aacctcgtac cagaggtcaa caatgaggtt atggctttgg 5161 agcccgttgt tggtgccgct atcgcggcac ctgtagcggg ccaacaaaat gtaattgacc 5221 cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagtg tcccctagaa 5281 acgctccagg tgaaatacta tggagcgcgc ccctaggccc tgacctaaat ccctacctat 5341 cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg 5401 cggggaacgc gttcaccgcc ggaaagatca tatttgcagc agtcccacca aattttccaa 5461 ctgaaggctt aagtcctagc caggtcacta tgttccccca tataatagta gatgttagac 5521 aattagaacc tgtgctgatt cccttacccg atgttaggaa taatttctac cattataatc 5581 aatcaaatga ctccactatt aagttgatag caatgttgta tacaccactt agggctaaca 5641 atgctgggga cgatgtcttc acagtttcgt gccgagttct cacgagacca tcccccgatt 5701 ttgatttcat attcttagtg ccacccacag ttgagtcaag aactaaacca ttctctgtcc 5761 cagtcttgac tgttgaggag atgaccaatt caagattccc cattcctttg gaaaagttgt 5821 tcacgggccc cagcagcgcc tttgttgttc aaccacaaaa tggcaggtgc acaactgatg 5881 gcgtgctcct aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg 5941 tcacccacat cacaggtagt cacaactata cgatgaattt ggcttctcaa aattggaaca 6001 attatgaccc aacagaagaa atcccagccc ctctaggaac tccagatttt gtggggaaga 6061 ttcaaggcat gctcacccaa accacaagga cagatggttc aacacgcggc cacaaagcta 6121 cagtgtacac tgggagcgcc gactttgctc caaaactggg tagagttcaa tttgaaactg 6181 acacaaacca tgattttgaa gtcaaccaaa acacaaagtt caccccagtc ggtgtcatcc 6241 aagatggtgg caccacccac cgaaatgaac cccaacagtg ggtgctccca agttactcag 6301 gcagaaacac tcacaatgta catctggccc ccgctgtagc tcccactttt ccgggtgaac 6361 agcttctctt ctttagatcc accatgcccg gatgcagcgg gtaccccaac atggatctgg 6421 actgtttgct cccccaggaa tgggtgcagt acttctacca agaagcagcc ccagcacaat 6481 ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg tttgaatgta 6541 agcttcacaa atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc 6601 cccccaatgg ttactttagg tttgattcct gggtcaatca gttctacaca cttgccccca 6661 tgggaaatgg aacggggcgt agacgtgtag tataatggct ggagctttct ttgctggatt 6721 ggcatctgat gtccttggct ctggacttgg ctctcttatc aatgctgggg ctggggccat 6781 caatcaaaaa gttgagtttg aaaacaacag gaaattgcaa caagcttcct tccaatttag 6841 cagcaatctg caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga 6901 ggccaccaaa aagctgcaac aggaaatgat gaaggttaag caggcaatgc tcctagaggg 6961 tgggttctct gagacagatg cagcccgcgg ggcaattaac gcccccatga caaaagctct 7021 ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat acaatgcagg 7081 ccgcttttcc acccctcaat catcgggggc attgccagga agaattaatc ttagggatgc 7141 tgttcctgct cggggacccc ccagtaagtc ttctaactct tctactgccg cctctgtgta 7201 ctcaaatcaa accacttcaa cgagacttgg ttctacagct ggttctggga ccagtgtttc 7261 gagcctcccg tcgactgcaa ggactaggag ctgggttgag gaccaaagta ggaatttgtc 7321 acctttcatg agaggggccc acaacatatc atttgtcacc ccaccatcta gcaggtcctc 7381 tagccaaggc acagtctcaa ccgtgcctaa agagattttg gactcctgga ctagcgcttt 7441 caacacgcgc aggcagcctc tcttcgctca cattcgtagg cgaggggagt cacgggtgta 7501 atgtgaaaag gcaaaattga ttatttttct ttttcttttc tttagtgtct ttt //