Typing tool
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Typing tool
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Complete norovirus genomes
| LC769706 | GII.3 | |
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| GII.P16 |
ORF1: 1..5083
ORF2: 5064..6710
ORF3: 6710..7474
LOCUS LC769706 7525 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2017/GII.3[P16]/NICED-RV-281, nearly complete
genome.
ACCESSION LC769706
VERSION LC769706.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7525)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2017/GII.3[P16]/NICED-RV-281"
/isolate="Hu/IN/2017/GII.3[P16]/NICED-RV-281"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2017-12-27"
/note="genotype: GII.3[P16]"
gene <1..5083
/gene="POL"
CDS <1..5083
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74162.1"
/translation="DATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPR
DEPQKPLRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANT
AFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARV
ELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPL
NILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDTFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELK
QAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARI
RYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSGD
DEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFT
GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRC
ARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKP
TRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPS
ETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5064..6710
/gene="VP1"
CDS 5064..6710
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74163.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6710..7474
/gene="VP2"
CDS 6710..7474
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74164.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANVINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSTMRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat cttcaggtga
61 aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta ggcccaaaca
121 gcctgccccg agagacgaac cacaaaagcc cctaagacca ccaactcccg agttggtcaa
181 gaggataccc cctcctccac ctaatggcga agaagaagaa gaaccagtca ttaggtacga
241 ggttaagagt gggatctctg gcctgcccga gcttacaaca gtcccccaac cggacgtggc
301 caacacagca ttcagtgtcc caccactgag cttgagagaa aacagggagg ccaaggaacc
361 gctaacaggg gcaatattag agatgtggga tggagagata taccactatg gcctgtacgt
421 ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca tggcaagagt
481 ggagctgacg cctctgtcat tgtactggcg tgtggtgtac actccccaat acctcatctc
541 ccctgaaact ctcaggaggc tcaacggaga ggcgttccct tacaccgcct ttgacaacaa
601 ctgctatgcc ttttgctgct gggtgttaga cctcaatgac tcatggctta gcaggaggat
661 ggtgcaaaga acaacgggct tcttcagacc ttaccaagag tggaacagaa aacccctgcc
721 taccatggat gactccaaaa ttaagaaggt agcaaatata ttcctatgtt cattgtccac
781 attattcacc agacccataa aagacctcat aggaaaaatt aaaccattaa acatattgaa
841 tatcctggca acgtgtgact ggacgtttgc cggaatagtg gagtctatga tattacttgc
901 tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg ctcccttact
961 cggggactat gagttgcaag ggccagaaga cctcgccgtt gaactcgtac ctgtagtaat
1021 gggagggatt ggtttggtgt tgggattcac caaagagaaa attggcaaaa tgttgtcctc
1081 agcagcatca acactcaggg cttgcaaaga tcttggcgcc tatggcttag agatactcaa
1141 attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagttag ccatggtgag
1201 ggccatagag gatgccgtgt tagatcttga ggcaatagaa aataaccaca tgacaaccct
1261 gttgaaagac aaagacagct tagcaacata tatgaaaaca ctagacatgg aggaggagaa
1321 agccagaagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa tcaacgccct
1381 gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag agctatctag
1441 caggataaga ccagtagttg ttatgatatc tggcaaacca ggaataggca aaactcatct
1501 ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggatcaaa gagtcgggct
1561 cataccaagg aacggtgtgg accattggga tgcatacaaa ggtgagagag tcgtgctgtg
1621 ggatgactat ggcatgagta atcccattca tgatgctctt cgcatacaag aattggctga
1681 tacgtgtccc cttaccttaa attgtgacag aattgaaaat aagggaaaag tttttgacag
1741 tgaagtcata ataattacaa caaaccttgc caatccagcc ccacttgatt atgtcaactt
1801 tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccgg aagtagaaaa
1861 ggcgaaacgg gactttcctg gtcagccaga tatgtggaag gacaccttca agccggactt
1921 ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg gcaacacccc
1981 acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc gtgcatcagg
2041 cctactgcat gagagaatgg atgaatttga actccaaggt cctacaatca ccaccttcaa
2101 tttcgaccgg aacagaatca cagcatttag acaattggct gcagaaaaca agtatggatt
2161 ggtggacacc atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg aagaactcaa
2221 acaagcaatc aggaatgtga ccatcaagag gtgccggatc atctacggtg gctccacgta
2281 tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga acacctctgt
2341 acagaccaac aacgagttgg ccggggccct gcaccatctc aaacatgctc gaatcaggta
2401 ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcata caaattgccg gcgctgcatt
2461 tgtcaccacg cgcattgcac gccgcatgaa catacaagaa ctctggtcga agccacaatt
2521 agatcaaaat gaatcagaga ctaaggaaga ggcccccaag tcaggagatg acgagttcat
2581 catatcttct aaggacatca aggaggaagg aaagaagggc aaaaacaaaa ctggccgtgg
2641 caagaaacac actgcatttt ccagcaaggg cttgagcgat gaggagtatg acgagtacaa
2701 gaggataaga gaagagagaa atgggaagta ctccatagag gagtatcttc aagacagaga
2761 caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct gtgaagagga
2821 ggagatcaaa atccgtcaga gaatttttcg tcccaccagg aaacaaagaa aggaagagag
2881 ggccacatta gggctagtaa caggttcaga aatcagaaaa agaaaccctg atgacttcaa
2941 acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg agaaactgga
3001 ctttgaggct cccccaagca tatggtctag gattgtgagc tttggttctg gctggggctt
3061 ctgggtatca ccaagcctgt tcataacatc aactcatgta atccccgcag gcataacaga
3121 agcgtttgga gtctccatca aacaaattca gatccacaaa tcaggtgaat tttgccgatt
3181 cagattccca aaaccaatta gaccagatgt gacaggaatg atcttggaag aaggtgcgcc
3241 tgaaggcacc gtggcaactg tgcttatcaa acgccccacc ggagagctca tgcctcttgc
3301 agccagaatg ggaacacacg caaccatgaa aattcaaggc cgcatggttg gcggacagat
3361 gggtatgttg ctcactgggt caaatgctaa aggaatggat ttgggaacaa ctcctggtga
3421 ctgtggttgt ccttacatct ataaaagggg caatgattat atagtcattg gggtgcacac
3481 tgcagcagcc cgtggtggaa acaccgtcat ctgcgccaca cagggaagtg agggcgaggc
3541 aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc taggccctgg
3601 gggcgcacca aagttgagca ccaaaaccaa attttggagg tcatcaaaca cgccccttcc
3661 accagggaca tatgaacctg cctacctcgg tggccgtgat ccgcgtgtta agggtgggcc
3721 ctccttgcag caggtaatga gagatcagtt gaagccattc actgaaccca ggggcaaacc
3781 tccaagacca agtgtattgg aagcagccaa acaaaccatt attaatgtcc tcgaacaaac
3841 cctggaccct ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg acaaaaccac
3901 ctccagcggg catccccatc acgtccgaaa gaatgaattc tggaatggtg aaaccttcac
3961 tggtaaattg gcagaccaag catcaaaagc aaacctaatg tttgaggaag ggaaacacat
4021 gacaccagtg tatacagcag cactcaagga tgagctagtt aagactgaga aaatctatgg
4081 aaagatcaag aagagactac tctggggctc tgacttgtcc accatgatcc ggtgcgctag
4141 gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc cagtacgagt
4201 tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca gatataaata
4261 ccactatgat gcagactact ctcgttggga ttcaacacaa cagagggcag tactagcggc
4321 agccttggaa atcatggtta gattctctgc agaaccacaa ttggcacaaa tagtcgctga
4381 ggatctgctg gcccctagtg tagtagatgt aggagacttt aaaatcacaa taaatgaagg
4441 gctcccatct ggtgtgccgt gcacttctca atggaactcc atcgcacact ggctgttaac
4501 tctctgtgcc ttgtctgaag tcaccaaact gtcccctgac atcatacaag caaattccat
4561 gttctcattt tacggtgatg acgagattgt cagcaccgac ataaaattgg accctgaaca
4621 gctaaccgcc aaattgaagg agtacggtct gaaaccaacc cgcccagaca agaccgaggg
4681 acccctgatc atcagtgaag atttgaacgg actcactttc ctccgaagga cggtgactcg
4741 tgacccagct ggctggtttg gaaaactcga ccaaagctca atcttgaggc agatgtactg
4801 gactagagga ccaaatcatg aagaccccag tgagacaatg ataccccatt ctcaaagacc
4861 catacagctc atggcactgc ttggtgaagc ctctcttcac gggccctctt tctatagtaa
4921 aatcagtaaa ctggtcataa ctgaactcaa agaaggtggg atggactttt acgtgccaag
4981 gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg agggcgatcg
5041 caatctggct cccaattttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctaatg
5101 atggtgccgc cggcctcgtc ccagagatca acaatgaggc aatggcgcta gagccagtgg
5161 cgggtgcagc gatagcagca cccctcactg gtcagcaaaa tataattgat ccctggatta
5221 tgaataattt tgtgcaagca cctggtggtg agtttacagt gtcccccaga aattcccctg
5281 gtgaagtcct tcttaatttg gaactgggcc cagaaataaa tccctatttg gcccatcttg
5341 ctagaatgta caatggttat gcaggtggat ttgaagtgca ggtggtccta gctggaaatg
5401 cgtttacagc aggaaagata atctttgcag ccatcccccc caattttcca attgacaatt
5461 taagtgcagc acagatcaca atgtgcccac atgtgattgt ggatgtcagg cagttggaac
5521 cagtcaacct cccgatgcct gacgtccgca acaacttctt tcattataac caagggtctg
5581 actcgaggtt acgcctaatt gcaatgctat acacacccct tagggcaaac aattctgggg
5641 atgatgtttt cactgtgtct tgtagagtgt taactagacc tagtcctgat ttctcattca
5701 atttccttgt gccacctact gtggagtcaa agacaaaacc cttttccctc cctatcctga
5761 ctatctctga aatgtccaat tctaggttcc cagtaccaat tgattcccta cataccagtc
5821 ctactgagaa tattgttgtt cagtgccaaa atgggcgcgt cacccttgat ggtgaactga
5881 tgggcaccac ccaactcttg cctagccaaa tctgtgcttt caggggcgtt ctcaccagat
5941 caacaagcag agccagtgac caggccgata cagcaacccc cagattgttt aattattatt
6001 ggcacataca attggataat ctaaatggaa ccccttatga tcctgcagaa gacataccag
6061 gccccctagg gacaccagat ttccgtggca aagtctttgg cgtggccagc cagagaaatc
6121 ctgatgccac gactagggca catgaggcaa agatagatac cacatctggc cgcttcaccc
6181 caaagctagg ctcattagag atatccactg aatctagtga ttttgaccaa aaccaaccga
6241 caagattcac cccagttggc attggagttg accatgaggc agactttcag caatggaccc
6301 tacccgacta tgctggtcag ttcacacaca acatgaactt agccccagct gttgctccta
6361 acttccctgg tgagcagctc cttttcttcc gctcacattt gccatcttct ggtgggcgat
6421 ccaatgggat tctagactgc ctagttcccc aagaatgggt acagcacttc taccaagaat
6481 cagccccctc tcagtctcaa gtggccctgg ttaggtatgt taatcctgac actggtagag
6541 tgttatttga ggccaagcta cacaaattag gtttcatgac tatagccaag aatggtgatt
6601 ctccaataac tgtccctcca aatggatact ttaggtttga atcttgggtg aacccctttt
6661 acacacttgc ccccatggga actgggaatg ggcgtagaag gattcaataa tggctggagc
6721 ttttatagca ggattggctg gtgacatgct cacaaatact gtaggatctt tagttaatgc
6781 aggagctaat gttattaatc aaacaattga ttttgaaaat aataaatatt tgcaaaatgc
6841 ttcttttaat catgataagg agatgctgaa tgcacaagtt gaggcaacaa agaagttaca
6901 ggctgacatg attgctatca aacaaggggc tttgaccgct ggcggcttct cccctactga
6961 tgcagcccgt ggggcaatta atgcccccat gacaaaagtc ctagattgga atggaacgag
7021 atactgggca ccaggtgcca cctccacaac ctcgatgtcg ggtggcttta cacatcaaac
7081 tgtgcacagg tccacaccaa actttaaaac gaaccaggcc cccaaatcca cacccagcag
7141 tgggtctaca atgaggtcaa actcaaccca aatcactagc ctgagctcac actcgtccgg
7201 gtcgtctcga tctagcgggt ctacagtcat cagctcaata ccatcctcta acaggactag
7261 ggactgggtc aaccagcaaa attttaattt ggaaccacac atgcctggat ctcttaggac
7321 agcttttgtc tctccaccat ctagtacagc ctctagctca ggcacagtct caactgtgcc
7381 caaaaatgtt ttggactcct ggacatctgc gttcaacacg cgcagacagc cgctatttgc
7441 acaccttcgc agaagggggg agtcaaatgt ttagtgaaaa gattatttta aatttggttt
7501 aaattaggtt taatttggaa tcttt
//