Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC769705 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..5095
ORF2: 5076..6698
ORF3: 6698..7504
LOCUS LC769705 7566 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2017/GII.4 Sydney[P16]/NICED-RV-135, nearly
complete genome.
ACCESSION LC769705
VERSION LC769705.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7566)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7566
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2017/GII.4
Sydney[P16]/NICED-RV-135"
/isolate="Hu/IN/2017/GII.4 Sydney[P16]/NICED-RV-135"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2017-11-08"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5095
/gene="POL"
CDS <1..5095
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74159.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVENTSVQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5076..6698
/gene="VP1"
CDS 5076..6698
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74160.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6698..7504
/gene="VP2"
CDS 6698..7504
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74161.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSRALPGRANLRDAVPARGPSIKSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gatggcgtct aacgacgcta ccgtcgccgt tgcttgcaac aacaacaacg acaaggaaaa
61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag ccctcggggc
121 taggcccaaa cagccagccc cgagagacga accacaaaag cccccaagac caccaactcc
181 cgagttggtc aagaggatac cccctcctcc acctaatggc gaagaagaag aagaaccagt
241 cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagtccccca
301 accggacgtg gccaacacgg cattcagtgt tccaccactg agcttgagag aaaacaggga
361 ggccaaggag ccgctaacag gggcaatact agagatgtgg gacggagaga tataccacta
421 tggcctgtac gtggagaaag gcttagtgtt gggtgtgcac aaaccacctg cagccataag
481 catggcaaga gtggaactga cgccgctgtc attgtactgg cgtgtggtgt acactcccca
541 atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgtttc cttacaccgc
601 cttcgacaac aactgctatg ccttttgctg ctgggtgttg gacctcaatg actcatggct
661 tagcaggagg atggtgcaaa gaacaacggg cttcttcaga ccttaccaag agtggaacag
721 aaaacccctg cctaccatgg atgactccaa aataaagaag gtagcaaata tattcctatg
781 ctcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa ttaaaccatt
841 aaacatattg aacatcttgg caacgtgtga ctggacgttc gccggaatag tggagtctct
901 gatattactt gccgaactct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat
961 cgctccctta ctcggggact acgagttgca agggccagaa gacctcgccg ttgaactcgt
1021 acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga aaataggtaa
1081 aatgttgtcc tcagcagcat caacactcag ggcttgcaaa gatcttggtg cctatggctt
1141 agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct
1201 agccatggtg agggccatag aggatgccgt actagatctt gaggcaatag aaaataacca
1261 catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa cactggacat
1321 ggaggaggag aaagccagaa ggttgtccac aaaatctgca tcccctgaca tagttgggac
1381 aatcaacgcc ctgctggctc gaatagcagc ggccaggtca ttagtccaca gggccaagga
1441 agagctatct agcaggataa gaccagtagt tgttatgata tctggcaaac caggaatagg
1501 caaaactcat ctggccaggg aggtggcaag aaaggtggca tccactctca caggggacca
1561 aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggtgagag
1621 agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc ttcgcataca
1681 agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa ataagggaaa
1741 agtttttgac agtgaagtca taataataac aacaaacctt gccaacccag ccccacttga
1801 ttatgtcaac tttgaggcct gttccaggag aattgatttc ctggtgtacg ctgaggcacc
1861 agaagtagaa aaggcaaaac gggattttcc tggtcagcca gatatgtgga aggacgcctt
1921 caagccggac ttttcacaca tcaagctaca gcttgcacct cagggcggct ttgacaagaa
1981 tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggtt ctctgattgc
2041 ccgtgcatca ggcctactgc atgagaggat ggatgaattt gagctccaag gtcccacaat
2101 caccactttc aatttcgacc ggaacagaat cacagcattc agacaattgg ctgcagaaaa
2161 caagtatgga ttggtggata ccatgaaagt tggcaatcaa ctaaaaggag taaaaaccat
2221 ggaagaactc aaacaagcaa tcaggaatgt gaccatcaag aggtgccgga tcatctacgg
2281 tggctccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcga
2341 gaacacctct gtacagacca acaacgagtt ggccggggcc ctgcaccatc tcaaacacgc
2401 ccgaatcagg tactatgtca aatgtgtgca agaagcagtc tattccatca tacaaattgc
2461 cggcgctgcg tttgtcacca cgcgcattgc acgccgcatg aacatacaag aactctggtc
2521 gaagccacaa ttagatcaaa atgaatcaga gactaaggaa gaagccccca agtcagaaga
2581 tgacgagttc atcatatctt cgaaggacat caaggaagaa ggaaagaagg gcaaaaacaa
2641 aactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg atgaggagta
2701 tgacgagtac aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct
2761 tcaagacaga gacaggtact atgaggagct cgccattgcc aaggccacgg aagaagactt
2821 ctgtgaagag gaggagatca aaatccgtca gagaattttc cgtcccacca ggaaacaaag
2881 aaaggaggag agggccacat tagggctggt aacaggttca gaaatcagaa aaagaaaccc
2941 tgatgacttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa
3001 tgagaaactg gactttgagg cccccccaag catatggtct aggattgtga gctttggttc
3061 tggctggggc ttctgggtat caccaagcct gttcataaca tcaactcatg taatccccgc
3121 aggcataaca gaagcatttg gagtccccat caagcaaatt cagatccaca aatcaggtga
3181 attttgccga ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgatcttgga
3241 agaaggtgcg cctgaaggca ccgtggcaac tgtgctcatc aaacgcccca ccggagagct
3301 catgcctctt gcagccagaa tgggaacaca cgcaaccatg aaaattcaag gccgcatggt
3361 tggcgggcag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac
3421 aactcctggt gactgtggct gcccttacat ctataaaagg ggcaatgact atatagttat
3481 tggggtgcac actgcagcag cccgtggtgg taatactgtc atctgtgcca cacagggaag
3541 tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacccat
3601 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa
3661 cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgtg atccgcgtgt
3721 taagggtggg ccctccttac agcaggtaat gagagaccag ttgaagccat tcactgaacc
3781 caggggcaaa cctccaagac caagtgtttt ggaagcagcc aaacaaacca ttatcaatgt
3841 tctcgaacaa accctggacc ctccacaaaa atggacatac gcacaggcgt gtgcctcact
3901 tgacaaaacc acctccagcg ggaatcccca tcacgtccga aagaatgaat tctggaatgg
3961 tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga
4021 agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag tcaagactga
4081 gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttat ccaccatgat
4141 ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact gtatatcact
4201 cccagtacga gttggcatga atatgaatga agatggccca ataatatttg agaaacattc
4261 cagatacaaa tatcactatg atgcagacta ctctcgttgg gattcaacac aacagagggc
4321 agtactagca gcagctttgg aaatcatggt cagattctct gcagaaccac aattggcaca
4381 aatagtcgct gaggatctgc tagcccctag tgtagtagat gtaggagact ttaaaatcac
4441 aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact ccatcgcaca
4501 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca
4561 agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt
4621 ggaccctgaa cagttaaccg ccaagttgaa ggagtacggc ctgaaaccaa cccgcccaga
4681 caagaccgag ggacccctga tcatcagtga agatttgaat ggactcactt tcctccgaag
4741 gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagtt caattttgag
4801 gcagatgtac tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca
4861 ttctcaaaga cccatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc
4921 tttctacagt agaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt
4981 ttacgtgcca aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgcca
5101 acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag gttatggctt
5161 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5221 acccctggat tagaaataat tttgtacaag cccctggtgg ggagtttaca gtatccccta
5281 gaaacgctcc aggtgaaata ctatggagcg cgcccctagg ccctgaccta aatccctacc
5341 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5401 tcgcggggaa cgcgttcacc gccgggaaga ttatatttgc agcagtccca ccaaattttc
5461 caactgaagg cttaagtcct agccaggtca ctatgttccc ccatataata gtagatgtta
5521 gacaattaga acctgtgctg attcccttac ccgatgttag gaataatttc tatcattaca
5581 atcagtcaaa tgactccact attaagttga tagcaatgtt gtatacacca cttagggcta
5641 ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgaga ccatcccccg
5701 attttgattt catattttta gtgccaccca cagttgagtc aagaactaaa ccattctctg
5761 tcccagtttt aactgttgag gagatgacca attcaagatt ccccatccct ttggaaaagt
5821 tgttcacagg ccccagcagt gcctttgttg ttcaaccaca aaacggcaga tgcacaactg
5881 atggcgtgct cctaggcacc acccaacttt ctcctgtcaa catctgcacc ttcagagggg
5941 atgtcaccca catcacaggt agtcgcaact acacaatgaa tttggcttct caaaattgga
6001 acaactatga cccaacagaa gaaattccag cccctctagg aactccagat tttgtgggga
6061 agattcaagg tgtgctcacc caaaccacaa ggacagatgg ttcaacacgc ggccacaaag
6121 ctacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa
6181 ctgacacaga ccatgatttt gaagctaatc aaaacacaaa gttcacccca gtcggtgtca
6241 tccaagatgg tagcaccacc caccgaaacg aaccccaaca gtgggtgctc ccaagttact
6301 caggcagaaa tactcacaat gtacatttgg cccccgctgt agcccccacc tttccgggtg
6361 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6421 tggactgtct gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac
6481 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6541 gcaagcttca caaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta
6601 tcccccccaa tggttacttt aggtttgatt cctgggtcaa ccagttctac acgcttgccc
6661 ccatgggaaa tggaacgggg cgtagacgtg tagtataatg gctggagctt tctttgctgg
6721 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc
6781 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6841 tagcagcaat ttgcaacagg cttcatttca acatgataaa gagatgctcc aagcacaaat
6901 tgaggccacc aaaaagctac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga
6961 gggtgggttc tctgagacag atgcagcccg cggggcaatt aacgccccca tgacaaaagc
7021 tttggactgg agcgggacaa ggtactgggc tccagatgct agaattacaa catacaatgc
7081 aggccacttt tccacccctc aaccatcgag ggcactgcca ggaagagcta atcttaggga
7141 cgctgtccct gctcggggac cctccatcaa atcttctaac tcttctactg ctacctctgt
7201 gtactcaaat caaactattt caacgagact tggttctaca gccggttctg gaaccagtgt
7261 ctcgagcctc ccgtcaactg caaggactag gagctgggtt gaggatcaaa ataggaattt
7321 gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat ctagcagatc
7381 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc
7441 tttcaacacg cgcaggcagc ctctcttcgc tcacattcgt aagcgagggg agtcacgggt
7501 gtaatgtgaa aagacaaaac tgattatttt tctttttcct ttctttagtg tcttttaaaa
7561 aaaaaa
//