Typing tool
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Typing tool
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Complete norovirus genomes
| LC769704 | GII.3 | |
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| GII.P16 |
ORF1: 4..5103
ORF2: 5084..6730
ORF3: 6730..7494
LOCUS LC769704 7520 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2017/GII.3[P16]/NICED-RV-100, nearly complete
genome.
ACCESSION LC769704
VERSION LC769704.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7520)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7520
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2017/GII.3[P16]/NICED-RV-100"
/isolate="Hu/IN/2017/GII.3[P16]/NICED-RV-100"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2017-10-20"
/note="genotype: GII.3[P16]"
gene 4..5103
/gene="POL"
CDS 4..5103
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74156.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRGEPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARVAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTTTTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIMQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSDDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFW
NGETFTGKLADQASKANLMFEEGKHMSPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5084..6730
/gene="VP1"
CDS 5084..6730
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74157.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6730..7494
/gene="VP2"
CDS 6730..7494
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74158.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVSAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRATPNLKTNQAPKSTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac
61 aaggaaaaat cttcaggtga aggcttattt acaaatatgt cttccacctt aaagaaagcc
121 ctcggggcta ggcccaaaca gcctgccccg agaggcgaac cacaaaagcc cccaagacca
181 ccaactcccg agttggtcaa gaggataccc cctcctccac ccaatggcga ggaagaagaa
241 gaaccagtca ttaggtatga ggttaagagt gggatctctg gcctgcccga gctcacaaca
301 gtcccccaac cggacgtggc caacacagca ttcagtgttc cgccactgag cttgagagaa
361 aacagggagg ccaaggaacc gctaacaggg gcaatattag agatgtggga tggagagata
421 taccactatg gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca
481 gccataagca tggcaagagt ggagctgacg ccgctgtcat tgtactggcg tgtggtatac
541 actccccaat acctcatctc ccctgaaact ctcaggaggc tcaacggaga ggcgttccct
601 tacaccgcct tcgacaacaa ctgctacgcc ttttgctgtt gggtgttaga cctcaatgac
661 tcatggctta gcaggaggat ggtgcaaaga acaacgggct tcttcagacc ttaccaagag
721 tggaacagaa aacccctgcc taccatggat gactccaaaa ttaagaaggt ggcaaacata
781 ttcctatgtt cattgtccac attattcacc agacccataa aagacctcat aggaaaaatt
841 aaaccattaa acatattgaa catcctggca acgtgtgact ggacgtttgc cggaatagtg
901 gagtctctga tattacttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct
961 gctatgatcg ctcccttact cggggactac gagttgcaag ggccagaaga cctcgccgtt
1021 gaactcgtac ctgtggtgat gggagggatt ggtttggtgt tgggattcac caaagagaaa
1081 attggcaaaa tgttgtcctc agcagcatca acactcaggg cttgcaaaga tcttggtgcc
1141 tatggcttag agatactcaa attggtcatg aagtggttct tcccaaagaa agaggaggcc
1201 aatgagctag ccatggtgag ggccatagag gatgccgtac tagatcttga ggcaatagaa
1261 aataaccaca tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca
1321 ctggacatgg aagaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata
1381 gttgggacaa ttaacgccct gctggctcga gtagcagcgg ccaggtcatt agtccacagg
1441 gccaaggaag agctatctag caggataaga ccagtggttg ttatgatatc tggcaaacca
1501 ggaataggca aaactcatct ggccagggag gtggcaagaa aggtggcatc cacactcaca
1561 ggggatcaga gagtcggact cataccaaga aacggtgtgg accattggga tgcatacaaa
1621 ggtgagagag tcgtgctgtg ggacgactat ggcatgagta accccattca tgatgctctg
1681 cgcatacaag aattggctga tacgtgtccc ctcaccttaa attgtgacag aattgaaaat
1741 aagggaaaag tttttgacag tgaagtcata ataattacaa caaaccttgc caatccagcc
1801 ccacttgatt atgtcaactt tgaggcatgt tccagaagaa ttgatttcct ggtgtacgct
1861 gaggcaccag aagtagaaaa ggcaaaacgg gactttcctg gtcagccaga tatgtggaag
1921 gacgccttca agccggactt ttcacacatc aagctacagc ttgcacctca gggtggcttt
1981 gacaagaatg gcaacacccc acatgggaaa ggagtgatga agactcttac taccggttct
2041 ctgattgccc gtgcatcagg cctactgcat gagaggatgg atgaatttga gcttcaaggt
2101 cccacaacca ccaccttcaa tttcgaccgg aacagaatca cagcattcag acagttggct
2161 gcagaaaaca agtatggatt ggtggatacc atgaaagttg gcaatcaact aaaaggagtg
2221 aaaaccatgg aagaactcaa acaagcaatc aggaatgtga ccatcaagag gtgccggatc
2281 atctacggtg gctccacgta tgaccttgaa tctgatggca agggcaaagt tttagtggaa
2341 aaggtcaaga acacctctgt acagaccaac aacgagttgg ccggggccct gcaccatctc
2401 aaacacgccc gaatcaggta ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcatg
2461 caaatcgccg gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa catacaagaa
2521 ctctggtcga agccacaatt agatcaaaac gaatcagaga ctaaggaaga ggcccccaaa
2581 tcagatgatg acgagttcat catatcttct aaggacatca aggaggaagg aaagaagggc
2641 aaaaacaaaa ctggccgcgg caagaaacac actgcattct ccagcaaggg cttgagcgac
2701 gaggagtatg atgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag
2761 gagtatcttc aagacagaga caggtactat gaggagctcg ccattgccaa ggccacggaa
2821 gaagactttt gtgaagagga ggagatcaaa atccgtcaga gaattttccg tcccaccagg
2881 aaacaaagaa aggaagagag ggccacatta gggctagtaa caggttcaga aatcagaaaa
2941 agaaaccctg atgacttcaa acccaaaggg aagctgtggg ccgatgacaa tagaagtgtt
3001 gactacaatg agaaactgga ctttgaggcc cccccaagca tatggtctag gattgtgagc
3061 tttggttctg gctggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgta
3121 atccccgcag gcataacaga agcatttgga gtccccatca aacaaattca gatccacaaa
3181 tcaggtgaat tttgccgatt caggttccca aaaccaatta gaccagatgt gacaggaatg
3241 atcttggaag aaggtgcgcc tgaaggcacc gtggcaactg tgctcatcaa gcgccccacc
3301 ggagagctca tgcctcttgc ggccagaatg ggaacacacg caaccatgaa aattcaaggc
3361 cgcatggttg gcggacagat gggtatgttg ctcactggat caaatgctaa aggaatggat
3421 ttgggaacaa ctcctggtga ctgtggctgt ccttacatct ataaaagggg caatgactat
3481 atagccattg gggtgcacac tgcagcagcc cgtggtggaa ataccgtcat ctgtgccaca
3541 cagggaagtg agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg
3601 gcacccattc taggccctgg gggtgcacca aaattgagca ccaaaaccaa attctggagg
3661 tcatcgaaca cgccccttcc accagggaca tatgagcctg cctacctcgg tggccgtgat
3721 ccgcgtgtta agggtggacc ctctttgcag caggtaatga gagaccagtt gaaaccattc
3781 actgagccca ggggcaaacc tccaagacca agtgtattgg aagcagccaa acaaaccatt
3841 atcaatgtcc tcgaacaaac cttagaccct ccacaaaaat ggacatacgc acaggcatgt
3901 gcctcacttg acaaaaccac ctccagcggg catccccatc acgcccgaaa gaatgaattc
3961 tggaatggtg agaccttcac tggtaaattg gcagaccaag catcaaaagc gaacctaatg
4021 tttgaggaag ggaaacacat gtcaccagtg tatacagcag cactcaagga cgagctagtc
4081 aagactgaga aaatctatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc
4141 accatgatcc ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgc
4201 atatcactcc cagtacgagt tggcatgaat atgaatgaag atggcccaat aatatttgag
4261 aaacattcca gatacaaata ccactatgat gcagactact ctcgttggga ttcgacacaa
4321 cagagggcag tactagcagc agccttggaa atcatggtca gattctctgc agaaccacaa
4381 ttggcacaaa tagtcgctga ggatctgctg gcccccagtg tggtagatgt aggagacttt
4441 aaaatcacaa taaatgaagg gctcccatct ggtgtgccat gcacttctca atggaactcc
4501 atcgcacact ggctgctaac tctctgtgcc ttgtctgaag tcaccaaact gtcccctgac
4561 attatacaag caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac
4621 ataaaattgg accctgaaca gttaaccgcc aagttgaagg agtacggcct gaaaccaacc
4681 cgcccagaca agaccgaggg acccctgatc atcagtgaag atttgaacgg actcactttc
4741 ctccgaagga cggtgactcg tgacccagct ggctggtttg gaaaactgga ccaaagctca
4801 attttgaggc agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg
4861 ataccccatt ctcaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac
4921 ggaccctctt tctatagtaa aatcagtaaa ttggtcataa ctgaactcaa agaaggtggg
4981 atggactttt acgtgccaag acaggaaccc atgttcaggt ggatgagatt ttctgacttg
5041 agcacgtggg agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgaa
5101 tgacgctgct ccatctaatg atggtgccgc cggcctcgta ccagagatca acaatgaggc
5161 aatggcgcta gatccagtgg cgggtgcagc gatagcagca ccccttactg gtcagcaaaa
5221 cataatagat ccctggatta tgaacaactt tgtgcaagca cctggtggtg aatttacagt
5281 gtcacctagg aactcccctg gtgaagtgct tctaaattta gaattaggcc cagaaataaa
5341 cccctatctg gctcatcttg ctaggatgta caatggttat gcaggtggtt ttgaggtgca
5401 ggtggtcctg gctggaaatg cgtttacagc ggggaaagtg atctttgcag ctataccccc
5461 caatttccca accgacaatt tgagtgcagc acaaatcaca atgtgtcccc atgtaattgt
5521 ggatgtcagg cagctggagc caatcaatct cccgatgcct gatgtccgca acaatttctt
5581 ccattataat caaggttctg attcgaggtt gcgcttaatt gcaatgttgt atacacccct
5641 cagggcaaat aattctggag atgatgtttt cactgtgtca tgtagggtat tgactaggcc
5701 cagtcctgat ttctccttca atttcctcgt cccgcccact gtggaatcaa agacaaaact
5761 cttcaccctc cctatcttga ctatctccga gatgtctaat tctagatttc cagtgccaat
5821 tgattctctg cacaccagcc caactgacaa cattgttgtc caatgccaaa acgggcgtgt
5881 cacccttgac ggtgagctaa tgggcaccac tcagctcttg ccgagtcaga tatgtgcttt
5941 taggggtgtg ctcaccagat caacaagcag ggccagtgac caagctgacg cagcaacccc
6001 tagactcttc aactactact ggcacataca gctagacaac ctaaatggga ccccgtatga
6061 tcctgcagag gacataccag ctcctcttgg gacgccagac tttcggggca aagtctttgg
6121 cgtggccagc cagagaaacc ctgacagcac aacaagggca catgaggcaa aagtggacac
6181 aacatctggc cgcttcaccc caaaattggg ctccctagaa atatccactg aatctagtga
6241 ttttgaccaa aaccaaccaa caagattcac cccagttggc attggagttg ataatgaggc
6301 agattttcaa caatggactt tacctgacta ttctggtcag ttcactcaca acatgaatct
6361 ggccccagct gtcgccccca attttcctgg tgagcagctt ctcttcttcc gctcacattt
6421 gccatcctct ggtgggcggt ccaatggtat cctagactgc ctggtccccc aggaatgggt
6481 ccagcatttc tatcaggaat ccgcccctgc ccaaacgcag gtggctctgg tcaggtatgt
6541 caaccctgat actggtaggg tgttgtttga ggctaagctg cataagctgg gttacatgac
6601 catagctaag agtggtgatt ctccaataac tgtgccccca aatggatact ttaggtttga
6661 atcttgggtg aatccctttt acacactcgc ccccatggga actgggaatg ggcgtagaag
6721 gattcaataa tggctggagc ctttatagca ggattggctg gtgacatgct cacaaatact
6781 gtagggtctt tagtcagtgc aggggctggt gctattaatc aaaaagttga tttcgaaaat
6841 aataaatatt tacaaaatgc atccttcaat catgataagg agatgttaaa tgcacaaatt
6901 gaggcaacaa agaggctaca agctgacatg attgctatca aacaaggggc tttgaccgct
6961 ggcggcttct cccccactga tgcagcccgt ggggctatta acgcccccat gacaaaagtt
7021 ctggattgga gtgggaccag gtactgggca ccaaatgcca cctccacaac ttcaatgtca
7081 ggtggcttca caggacaagc tgtgcacaga gctacaccaa accttaaaac caaccaagcc
7141 ccaaaatcca cacccagcag tgggtcttca gtgaggtcaa gctcaaccca actcaccaat
7201 ttgagctcac actcatctgg gtcttctcga tccagcggat ccacgatggt cagctcgttg
7261 ccatcttcca gtaggactag agactgggtt aaccaacaga attttaattt ggaaccacac
7321 atgcctggat ctctcaggac agcttttgtc actccaccat ctagtacagc ctctagcttg
7381 gacacagtct caaccgtgcc caagagtgtt ttggactcct ggacatctgc gtttaacacg
7441 cgcagacagc cgctttttgc acaccttcgt agaagggggg agtcaaatgt ttagtgaaaa
7501 gattatttta aatttggttt
//